RNA–Protein interactions for RNA: ENST00000554994.5

ATXN3-231, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 922 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-231	ENST00000554994	AEBP2	Q6ZN18	517 aa	Predicted RBP	21.2	■□□□□ 0.98
ATXN3-231	ENST00000554994	CHIC1	Q5VXU3	224 aa		19.82	■□□□□ 0.76
ATXN3-231	ENST00000554994	SENP3	Q9H4L4	574 aa	Predicted RBP	18.11	■□□□□ 0.49
ATXN3-231	ENST00000554994	PHF23	Q9BUL5	403 aa	Predicted RBP	17.87	■□□□□ 0.45
ATXN3-231	ENST00000554994	FOXD1	Q16676	465 aa		16.94	■□□□□ 0.3
ATXN3-231	ENST00000554994	POTED	Q86YR6	584 aa		16.3	■□□□□ 0.2
ATXN3-231	ENST00000554994	MSH5	O43196	834 aa		15.94	■□□□□ 0.14
ATXN3-231	ENST00000554994	PIAS4	Q8N2W9	510 aa	Predicted RBP	15.81	■□□□□ 0.12
ATXN3-231	ENST00000554994	PLPPR3	Q6T4P5	718 aa		15.72	■□□□□ 0.11
ATXN3-231	ENST00000554994	PPP6R1	Q9UPN7	881 aa		15.63	■□□□□ 0.09
ATXN3-231	ENST00000554994	ADRA2B	P18089	450 aa		15.6	■□□□□ 0.09
ATXN3-231	ENST00000554994	MAPK8IP2	Q13387	824 aa	Predicted RBP	14.42	□□□□□ -0.1
ATXN3-231	ENST00000554994	DMRT2	Q9Y5R5	561 aa		14.3	□□□□□ -0.12
ATXN3-231	ENST00000554994	SCAF1	Q9H7N4	1312 aa	Known RBP	14.23	□□□□□ -0.13
ATXN3-231	ENST00000554994	CACNB1	Q02641	598 aa	Predicted RBP	13.94	□□□□□ -0.18
ATXN3-231	ENST00000554994	DCAF8L1	A6NGE4	600 aa		13.91	□□□□□ -0.18
ATXN3-231	ENST00000554994	PPP4R3CP	Q6ZMV5	832 aa		13.77	□□□□□ -0.21
ATXN3-231	ENST00000554994	HOXD11	P31277	338 aa	Predicted RBP	13.64	□□□□□ -0.23
ATXN3-231	ENST00000554994	RNF39	Q9H2S5	420 aa		13.56	□□□□□ -0.24
ATXN3-231	ENST00000554994	CNKSR2	Q8WXI2	1034 aa		13.55	□□□□□ -0.24
ATXN3-231	ENST00000554994	RNF216	Q9NWF9	866 aa	Predicted RBP	13.48	□□□□□ -0.25
ATXN3-231	ENST00000554994	C1QBP	Q07021	282 aa	Known RBP	13.34	□□□□□ -0.27
ATXN3-231	ENST00000554994	NCBP3	Q53F19	620 aa	Known RBP	13.14	□□□□□ -0.31
ATXN3-231	ENST00000554994	DNAJC5B	Q9UF47	199 aa		13.13	□□□□□ -0.31
ATXN3-231	ENST00000554994	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	13.11	□□□□□ -0.31
ATXN3-231	ENST00000554994	NPM3	O75607	178 aa	Known RBP	12.95	□□□□□ -0.34
ATXN3-231	ENST00000554994		U3KPZ7	1027 aa	Predicted RBP	12.75	□□□□□ -0.37
ATXN3-231	ENST00000554994	CAPN15	O75808	1086 aa		12.73	□□□□□ -0.37
ATXN3-231	ENST00000554994	SPINK5	Q9NQ38	1064 aa	Predicted RBP	12.69	□□□□□ -0.38
ATXN3-231	ENST00000554994	POTEH	Q6S545	545 aa		12.63	□□□□□ -0.39
ATXN3-231	ENST00000554994	DSG3	P32926	999 aa		12.62	□□□□□ -0.39
ATXN3-231	ENST00000554994	KCNA4	P22459	653 aa		12.48	□□□□□ -0.41
ATXN3-231	ENST00000554994	TRH	P20396	242 aa	Predicted RBP	12.47	□□□□□ -0.41
ATXN3-231	ENST00000554994	ABCB7	O75027	752 aa		12.43	□□□□□ -0.42
ATXN3-231	ENST00000554994	SLC4A2	P04920	1241 aa		12.43	□□□□□ -0.42
ATXN3-231	ENST00000554994	APLP2	Q06481	763 aa		12.35	□□□□□ -0.43
ATXN3-231	ENST00000554994	ZNF219	Q9P2Y4	722 aa	Predicted RBP	12.33	□□□□□ -0.44
ATXN3-231	ENST00000554994	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	12.26	□□□□□ -0.45
ATXN3-231	ENST00000554994	HNRNPUL2	Q1KMD3	747 aa	Known RBP	12.26	□□□□□ -0.45
ATXN3-231	ENST00000554994	SAMD1	Q6SPF0	538 aa	Predicted RBP	12.18	□□□□□ -0.46
ATXN3-231	ENST00000554994	RBM42	Q9BTD8	480 aa	Known RBP	12.06	□□□□□ -0.48
ATXN3-231	ENST00000554994	POLA2	Q14181	598 aa		12.01	□□□□□ -0.49
ATXN3-231	ENST00000554994	MYCN	P04198	464 aa	Predicted RBP	11.98	□□□□□ -0.49
ATXN3-231	ENST00000554994	CHRDL2	Q6WN34	429 aa		11.93	□□□□□ -0.5
ATXN3-231	ENST00000554994	ATF5	Q9Y2D1	282 aa	Predicted RBP	11.77	□□□□□ -0.53
ATXN3-231	ENST00000554994	SLC4A1AP	Q9BWU0	796 aa	Known RBP	11.73	□□□□□ -0.53
ATXN3-231	ENST00000554994	AKT1S1	Q96B36	256 aa		11.7	□□□□□ -0.54
ATXN3-231	ENST00000554994	FOXD4L1	Q9NU39	408 aa		11.7	□□□□□ -0.54
ATXN3-231	ENST00000554994	ZBTB12	Q9Y330	459 aa	Predicted RBP	11.68	□□□□□ -0.54
ATXN3-231	ENST00000554994	OSCAR	Q8IYS5	282 aa		11.66	□□□□□ -0.54
ATXN3-231	ENST00000554994	REM2	Q8IYK8	340 aa	Predicted RBP	11.63	□□□□□ -0.55
ATXN3-231	ENST00000554994	SP7	Q8TDD2	431 aa	Predicted RBP	11.63	□□□□□ -0.55
ATXN3-231	ENST00000554994	PIP4P2	Q8N4L2	257 aa		11.59	□□□□□ -0.55
ATXN3-231	ENST00000554994	HAX1	O00165	279 aa		11.52	□□□□□ -0.57
ATXN3-231	ENST00000554994	PITPNM1	O00562	1244 aa		11.52	□□□□□ -0.57
ATXN3-231	ENST00000554994	ZBTB22	O15209	634 aa		11.44	□□□□□ -0.58
ATXN3-231	ENST00000554994	FXR2	P51116	673 aa	Known RBP eCLIP	11.43	□□□□□ -0.58
ATXN3-231	ENST00000554994	NISCH	Q9Y2I1	1504 aa		11.35	□□□□□ -0.59
ATXN3-231	ENST00000554994	FBLN2	P98095	1184 aa		11.33	□□□□□ -0.6
ATXN3-231	ENST00000554994	EVX2	Q03828	476 aa		11.31	□□□□□ -0.6
ATXN3-231	ENST00000554994	SPDYE2B	A6NHP3	402 aa		11.3	□□□□□ -0.6
ATXN3-231	ENST00000554994	SPDYE6	P0CI01	402 aa		11.3	□□□□□ -0.6
ATXN3-231	ENST00000554994	ATXN8OS	P0DMR3	200 aa		11.3	□□□□□ -0.6
ATXN3-231	ENST00000554994	SPDYE2	Q495Y8	402 aa		11.3	□□□□□ -0.6
ATXN3-231	ENST00000554994	CLEC11A	Q9Y240	323 aa		11.3	□□□□□ -0.6
ATXN3-231	ENST00000554994	PRKAR2A	P13861	404 aa	Known RBP	11.25	□□□□□ -0.61
ATXN3-231	ENST00000554994	SPDYE1	Q8NFV5	336 aa	Predicted RBP	11.2	□□□□□ -0.62
ATXN3-231	ENST00000554994	ZNF692	Q9BU19	519 aa	Predicted RBP	11.19	□□□□□ -0.62
ATXN3-231	ENST00000554994	MKRN4P	Q13434	485 aa	Predicted RBP	11.17	□□□□□ -0.62
ATXN3-231	ENST00000554994	ABCC9	O60706	1549 aa		11.16	□□□□□ -0.62
ATXN3-231	ENST00000554994	CHADL	Q6NUI6	762 aa		11.1	□□□□□ -0.63
ATXN3-231	ENST00000554994	SSUH2	Q9Y2M2	353 aa		11.09	□□□□□ -0.63
ATXN3-231	ENST00000554994	C19orf67	A6NJJ6	358 aa		11.08	□□□□□ -0.64
ATXN3-231	ENST00000554994	GABBR2	O75899	941 aa		11.03	□□□□□ -0.64
ATXN3-231	ENST00000554994	PRR29	P0C7W0	189 aa		11.02	□□□□□ -0.65
ATXN3-231	ENST00000554994	PABPN1	Q86U42	306 aa	Known RBP eCLIP	11.01	□□□□□ -0.65
ATXN3-231	ENST00000554994	LHX8	Q68G74	356 aa		10.93	□□□□□ -0.66
ATXN3-231	ENST00000554994	CD44	P16070	742 aa	Known RBP	10.87	□□□□□ -0.67
ATXN3-231	ENST00000554994	FARP1	Q9Y4F1	1045 aa	Predicted RBP	10.83	□□□□□ -0.68
ATXN3-231	ENST00000554994	POTEI	P0CG38	1075 aa		10.77	□□□□□ -0.69
ATXN3-231	ENST00000554994	DCBLD2	Q96PD2	775 aa		10.72	□□□□□ -0.69
ATXN3-231	ENST00000554994	ZRANB1	Q9UGI0	708 aa		10.69	□□□□□ -0.7
ATXN3-231	ENST00000554994	CLCN6	P51797	869 aa		10.65	□□□□□ -0.7
ATXN3-231	ENST00000554994	CSRNP3	Q8WYN3	585 aa		10.65	□□□□□ -0.7
ATXN3-231	ENST00000554994	PLSCR2	Q9NRY7	297 aa		10.64	□□□□□ -0.71
ATXN3-231	ENST00000554994	CREBZF	Q9NS37	354 aa		10.63	□□□□□ -0.71
ATXN3-231	ENST00000554994	ZNF579	Q8NAF0	562 aa	Known RBP	10.62	□□□□□ -0.71
ATXN3-231	ENST00000554994	STAG3	Q9UJ98	1225 aa		10.6	□□□□□ -0.71
ATXN3-231	ENST00000554994	GALR2	O43603	387 aa	Predicted RBP	10.58	□□□□□ -0.72
ATXN3-231	ENST00000554994	SPDYE4	A6NLX3	237 aa		10.53	□□□□□ -0.72
ATXN3-231	ENST00000554994	PAK3	O75914	559 aa	Predicted RBP	10.53	□□□□□ -0.72
ATXN3-231	ENST00000554994	PHF12	Q96QT6	1004 aa		10.52	□□□□□ -0.73
ATXN3-231	ENST00000554994	DNAJC5	Q9H3Z4	198 aa		10.52	□□□□□ -0.73
ATXN3-231	ENST00000554994	EHMT2	Q96KQ7	1210 aa		10.47	□□□□□ -0.73
ATXN3-231	ENST00000554994	NPM1	P06748	294 aa	Known RBP eCLIP	10.44	□□□□□ -0.74
ATXN3-231	ENST00000554994	OTUD5	Q96G74	571 aa		10.44	□□□□□ -0.74
ATXN3-231	ENST00000554994	POTEB2	H3BUK9	544 aa		10.43	□□□□□ -0.74
ATXN3-231	ENST00000554994	CCDC180	Q9P1Z9	1646 aa		10.4	□□□□□ -0.74
ATXN3-231	ENST00000554994	PELP1	Q8IZL8	1130 aa	Known RBP	10.38	□□□□□ -0.75
ATXN3-231	ENST00000554994	MNX1	P50219	401 aa	Predicted RBP	10.36	□□□□□ -0.75

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