RNA–Protein interactions for RNA: ENST00000550661.1

PTPRR-210, Transcript of protein tyrosine phosphatase, receptor type R, humanhuman

TSL 3

Gene PTPRR, Length 1,024 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRR-210ENST00000550661 AEBP2Q6ZN18 517 aaPredicted RBP19.89■□□□□ 0.77
PTPRR-210ENST00000550661 CHIC1Q5VXU3 224 aa19.31■□□□□ 0.68
PTPRR-210ENST00000550661 PHF23Q9BUL5 403 aaPredicted RBP16.96■□□□□ 0.31
PTPRR-210ENST00000550661 SENP3Q9H4L4 574 aaPredicted RBP16.91■□□□□ 0.3
PTPRR-210ENST00000550661 FOXD1Q16676 465 aa15.71■□□□□ 0.11
PTPRR-210ENST00000550661 PLPPR3Q6T4P5 718 aa15.62■□□□□ 0.09
PTPRR-210ENST00000550661 PPP6R1Q9UPN7 881 aa15.02■□□□□ -0
PTPRR-210ENST00000550661 ADRA2BP18089 450 aa15.01□□□□□ -0.01
PTPRR-210ENST00000550661 PIAS4Q8N2W9 510 aaPredicted RBP14.8□□□□□ -0.04
PTPRR-210ENST00000550661 MSH5O43196 834 aa14.55□□□□□ -0.08
PTPRR-210ENST00000550661 NISCHQ9Y2I1 1504 aa14.14□□□□□ -0.15
PTPRR-210ENST00000550661 POTEDQ86YR6 584 aa14.1□□□□□ -0.15
PTPRR-210ENST00000550661 PPP4R3CPQ6ZMV5 832 aa13.75□□□□□ -0.21
PTPRR-210ENST00000550661 SCAF1Q9H7N4 1312 aaKnown RBP13.73□□□□□ -0.21
PTPRR-210ENST00000550661 MAPK8IP2Q13387 824 aaPredicted RBP13.66□□□□□ -0.22
PTPRR-210ENST00000550661 DMRT2Q9Y5R5 561 aa13.47□□□□□ -0.25
PTPRR-210ENST00000550661 CNKSR2Q8WXI2 1034 aa13.39□□□□□ -0.27
PTPRR-210ENST00000550661 NCBP3Q53F19 620 aaKnown RBP13.36□□□□□ -0.27
PTPRR-210ENST00000550661 KCNA4P22459 653 aa13.28□□□□□ -0.28
PTPRR-210ENST00000550661 NPM3O75607 178 aaKnown RBP13.16□□□□□ -0.3
PTPRR-210ENST00000550661 RNF216Q9NWF9 866 aaPredicted RBP13.16□□□□□ -0.3
PTPRR-210ENST00000550661 HOXD11P31277 338 aaPredicted RBP13.13□□□□□ -0.31
PTPRR-210ENST00000550661 DCAF8L1A6NGE4 600 aa12.95□□□□□ -0.34
PTPRR-210ENST00000550661 DNAJC5BQ9UF47 199 aa12.74□□□□□ -0.37
PTPRR-210ENST00000550661 SLC4A1APQ9BWU0 796 aaKnown RBP12.63□□□□□ -0.39
PTPRR-210ENST00000550661 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.56□□□□□ -0.4
PTPRR-210ENST00000550661 CCDC180Q9P1Z9 1646 aa12.54□□□□□ -0.4
PTPRR-210ENST00000550661 SLC4A2P04920 1241 aa12.44□□□□□ -0.42
PTPRR-210ENST00000550661 RNF39Q9H2S5 420 aa12.44□□□□□ -0.42
PTPRR-210ENST00000550661 U3KPZ7 1027 aaPredicted RBP12.31□□□□□ -0.44
PTPRR-210ENST00000550661 C1QBPQ07021 282 aaKnown RBP12.29□□□□□ -0.44
PTPRR-210ENST00000550661 FOXD4L1Q9NU39 408 aa12.26□□□□□ -0.45
PTPRR-210ENST00000550661 CACNB1Q02641 598 aaPredicted RBP12.25□□□□□ -0.45
PTPRR-210ENST00000550661 ZBTB22O15209 634 aa12.2□□□□□ -0.46
PTPRR-210ENST00000550661 MYCNP04198 464 aaPredicted RBP12.16□□□□□ -0.46
PTPRR-210ENST00000550661 EHMT2Q96KQ7 1210 aa12.14□□□□□ -0.47
PTPRR-210ENST00000550661 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.12□□□□□ -0.47
PTPRR-210ENST00000550661 HNRNPUL2Q1KMD3 747 aaKnown RBP12.12□□□□□ -0.47
PTPRR-210ENST00000550661 SAMD1Q6SPF0 538 aaPredicted RBP12.07□□□□□ -0.48
PTPRR-210ENST00000550661 APLP2Q06481 763 aa12.03□□□□□ -0.48
PTPRR-210ENST00000550661 CSRNP3Q8WYN3 585 aa12.03□□□□□ -0.48
PTPRR-210ENST00000550661 SPINK5Q9NQ38 1064 aaPredicted RBP12.02□□□□□ -0.49
PTPRR-210ENST00000550661 ABCC9O60706 1549 aa12.01□□□□□ -0.49
PTPRR-210ENST00000550661 CAPN15O75808 1086 aa12□□□□□ -0.49
PTPRR-210ENST00000550661 TRHP20396 242 aaPredicted RBP11.91□□□□□ -0.5
PTPRR-210ENST00000550661 ZNF219Q9P2Y4 722 aaPredicted RBP11.89□□□□□ -0.51
PTPRR-210ENST00000550661 ZCCHC6Q5VYS8 1495 aaKnown RBP11.85□□□□□ -0.51
PTPRR-210ENST00000550661 ATF5Q9Y2D1 282 aaPredicted RBP11.84□□□□□ -0.51
PTPRR-210ENST00000550661 ATXN8OSP0DMR3 200 aa11.83□□□□□ -0.52
PTPRR-210ENST00000550661 DSG3P32926 999 aa11.8□□□□□ -0.52
PTPRR-210ENST00000550661 MYO15BQ96JP2 1530 aa11.76□□□□□ -0.53
PTPRR-210ENST00000550661 DCAF1Q9Y4B6 1507 aa11.76□□□□□ -0.53
PTPRR-210ENST00000550661 ABCB7O75027 752 aa11.76□□□□□ -0.53
PTPRR-210ENST00000550661 NACADO15069 1562 aa11.73□□□□□ -0.53
PTPRR-210ENST00000550661 RB1CC1Q8TDY2 1594 aa11.69□□□□□ -0.54
PTPRR-210ENST00000550661 POLA2Q14181 598 aa11.67□□□□□ -0.54
PTPRR-210ENST00000550661 DCAF8L2P0C7V8 631 aa11.59□□□□□ -0.55
PTPRR-210ENST00000550661 ZBTB12Q9Y330 459 aaPredicted RBP11.46□□□□□ -0.57
PTPRR-210ENST00000550661 SCRIBQ14160 1630 aa11.4□□□□□ -0.58
PTPRR-210ENST00000550661 FBLN2P98095 1184 aa11.38□□□□□ -0.59
PTPRR-210ENST00000550661 UNC13AQ9UPW8 1703 aa11.36□□□□□ -0.59
PTPRR-210ENST00000550661 MKRN4PQ13434 485 aaPredicted RBP11.32□□□□□ -0.6
PTPRR-210ENST00000550661 SHROOM4Q9ULL8 1493 aa11.32□□□□□ -0.6
PTPRR-210ENST00000550661 BICRAQ9NZM4 1560 aa11.3□□□□□ -0.6
PTPRR-210ENST00000550661 OSCARQ8IYS5 282 aa11.28□□□□□ -0.6
PTPRR-210ENST00000550661 RBM42Q9BTD8 480 aaKnown RBP11.26□□□□□ -0.61
PTPRR-210ENST00000550661 PABPN1Q86U42 306 aaKnown RBP eCLIP11.19□□□□□ -0.62
PTPRR-210ENST00000550661 SPDYE2BA6NHP3 402 aa11.14□□□□□ -0.63
PTPRR-210ENST00000550661 SPDYE6P0CI01 402 aa11.14□□□□□ -0.63
PTPRR-210ENST00000550661 SPDYE2Q495Y8 402 aa11.14□□□□□ -0.63
PTPRR-210ENST00000550661 ZNF692Q9BU19 519 aaPredicted RBP11.1□□□□□ -0.63
PTPRR-210ENST00000550661 AKT1S1Q96B36 256 aa11.09□□□□□ -0.63
PTPRR-210ENST00000550661 SPDYE4A6NLX3 237 aa11.02□□□□□ -0.65
PTPRR-210ENST00000550661 SSUH2Q9Y2M2 353 aa11.02□□□□□ -0.65
PTPRR-210ENST00000550661 EIF4G1Q04637 1599 aaKnown RBP11.01□□□□□ -0.65
PTPRR-210ENST00000550661 REM2Q8IYK8 340 aaPredicted RBP10.98□□□□□ -0.65
PTPRR-210ENST00000550661 BAZ1AQ9NRL2 1556 aaPredicted RBP10.98□□□□□ -0.65
PTPRR-210ENST00000550661 SMARCA4P51532 1647 aa10.95□□□□□ -0.66
PTPRR-210ENST00000550661 CECR2Q9BXF3 1484 aa10.94□□□□□ -0.66
PTPRR-210ENST00000550661 FKBP8Q14318 412 aa10.91□□□□□ -0.66
PTPRR-210ENST00000550661 CC2D2AQ9P2K1 1620 aa10.89□□□□□ -0.67
PTPRR-210ENST00000550661 POTEHQ6S545 545 aa10.89□□□□□ -0.67
PTPRR-210ENST00000550661 MROH2BQ7Z745 1585 aa10.87□□□□□ -0.67
PTPRR-210ENST00000550661 PEG3Q9GZU2 1588 aa10.87□□□□□ -0.67
PTPRR-210ENST00000550661 PITPNM1O00562 1244 aa10.86□□□□□ -0.67
PTPRR-210ENST00000550661 SPDYE1Q8NFV5 336 aaPredicted RBP10.85□□□□□ -0.67
PTPRR-210ENST00000550661 SMARCA2P51531 1590 aa10.85□□□□□ -0.67
PTPRR-210ENST00000550661 CHRDL2Q6WN34 429 aa10.84□□□□□ -0.67
PTPRR-210ENST00000550661 CLEC11AQ9Y240 323 aa10.84□□□□□ -0.67
PTPRR-210ENST00000550661 ATAD2BQ9ULI0 1458 aa10.82□□□□□ -0.68
PTPRR-210ENST00000550661 RSF1Q96T23 1441 aaPredicted RBP10.82□□□□□ -0.68
PTPRR-210ENST00000550661 HMGXB3Q12766 1538 aa10.81□□□□□ -0.68
PTPRR-210ENST00000550661 NCAPD3P42695 1498 aa10.8□□□□□ -0.68
PTPRR-210ENST00000550661 PROM2Q8N271 834 aa10.77□□□□□ -0.69
PTPRR-210ENST00000550661 BAZ1BQ9UIG0 1483 aaKnown RBP10.76□□□□□ -0.69
PTPRR-210ENST00000550661 WIZO95785 1651 aa10.75□□□□□ -0.69
PTPRR-210ENST00000550661 STAG3Q9UJ98 1225 aa10.73□□□□□ -0.69
PTPRR-210ENST00000550661 TOP2AP11388 1531 aaKnown RBP10.72□□□□□ -0.69
PTPRR-210ENST00000550661 PRR29P0C7W0 189 aa10.71□□□□□ -0.69
PTPRR-210ENST00000550661 PIP4P2Q8N4L2 257 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms