RNA–Protein interactions for RNA: ENST00000548126.1

CCDC59-203, Transcript of coiled-coil domain containing 59, humanhuman

TSL 2

Gene CCDC59, Length 984 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC59-203ENST00000548126 AEBP2Q6ZN18 517 aaPredicted RBP31.69■■■□□ 2.66
CCDC59-203ENST00000548126 CHIC1Q5VXU3 224 aa30.18■■■□□ 2.42
CCDC59-203ENST00000548126 SENP3Q9H4L4 574 aaPredicted RBP27.28■■□□□ 1.96
CCDC59-203ENST00000548126 PHF23Q9BUL5 403 aaPredicted RBP26.81■■□□□ 1.88
CCDC59-203ENST00000548126 FOXD1Q16676 465 aa25.28■■□□□ 1.64
CCDC59-203ENST00000548126 PLPPR3Q6T4P5 718 aa24.19■■□□□ 1.46
CCDC59-203ENST00000548126 MSH5O43196 834 aa23.86■■□□□ 1.41
CCDC59-203ENST00000548126 PIAS4Q8N2W9 510 aaPredicted RBP23.71■■□□□ 1.39
CCDC59-203ENST00000548126 PPP6R1Q9UPN7 881 aa23.51■■□□□ 1.35
CCDC59-203ENST00000548126 ADRA2BP18089 450 aa23.49■■□□□ 1.35
CCDC59-203ENST00000548126 POTEDQ86YR6 584 aa23.21■■□□□ 1.31
CCDC59-203ENST00000548126 SCAF1Q9H7N4 1312 aaKnown RBP21.76■■□□□ 1.07
CCDC59-203ENST00000548126 MAPK8IP2Q13387 824 aaPredicted RBP21.55■■□□□ 1.04
CCDC59-203ENST00000548126 DMRT2Q9Y5R5 561 aa21.55■■□□□ 1.04
CCDC59-203ENST00000548126 PPP4R3CPQ6ZMV5 832 aa21.13■□□□□ 0.97
CCDC59-203ENST00000548126 CNKSR2Q8WXI2 1034 aa20.8■□□□□ 0.92
CCDC59-203ENST00000548126 DCAF8L1A6NGE4 600 aa20.74■□□□□ 0.91
CCDC59-203ENST00000548126 HOXD11P31277 338 aaPredicted RBP20.73■□□□□ 0.91
CCDC59-203ENST00000548126 RNF216Q9NWF9 866 aaPredicted RBP20.62■□□□□ 0.89
CCDC59-203ENST00000548126 CACNB1Q02641 598 aaPredicted RBP20.46■□□□□ 0.87
CCDC59-203ENST00000548126 NCBP3Q53F19 620 aaKnown RBP20.46■□□□□ 0.87
CCDC59-203ENST00000548126 RNF39Q9H2S5 420 aa20.24■□□□□ 0.83
CCDC59-203ENST00000548126 DNAJC5BQ9UF47 199 aa20.13■□□□□ 0.81
CCDC59-203ENST00000548126 C1QBPQ07021 282 aaKnown RBP20.04■□□□□ 0.8
CCDC59-203ENST00000548126 NPM3O75607 178 aaKnown RBP19.97■□□□□ 0.79
CCDC59-203ENST00000548126 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.85■□□□□ 0.772e-7■■□□□ 12.6
CCDC59-203ENST00000548126 KCNA4P22459 653 aa19.51■□□□□ 0.71
CCDC59-203ENST00000548126 U3KPZ7 1027 aaPredicted RBP19.29■□□□□ 0.68
CCDC59-203ENST00000548126 CAPN15O75808 1086 aa19.11■□□□□ 0.65
CCDC59-203ENST00000548126 APLP2Q06481 763 aa19.05■□□□□ 0.64
CCDC59-203ENST00000548126 SLC4A2P04920 1241 aa19.02■□□□□ 0.64
CCDC59-203ENST00000548126 SPINK5Q9NQ38 1064 aaPredicted RBP19■□□□□ 0.63
CCDC59-203ENST00000548126 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.97■□□□□ 0.63
CCDC59-203ENST00000548126 HNRNPUL2Q1KMD3 747 aaKnown RBP18.97■□□□□ 0.63
CCDC59-203ENST00000548126 DSG3P32926 999 aa18.92■□□□□ 0.62
CCDC59-203ENST00000548126 ZNF219Q9P2Y4 722 aaPredicted RBP18.82■□□□□ 0.6
CCDC59-203ENST00000548126 SAMD1Q6SPF0 538 aaPredicted RBP18.81■□□□□ 0.6
CCDC59-203ENST00000548126 TRHP20396 242 aaPredicted RBP18.76■□□□□ 0.59
CCDC59-203ENST00000548126 MYCNP04198 464 aaPredicted RBP18.58■□□□□ 0.56
CCDC59-203ENST00000548126 ABCB7O75027 752 aa18.57■□□□□ 0.56
CCDC59-203ENST00000548126 SLC4A1APQ9BWU0 796 aaKnown RBP18.51■□□□□ 0.55
CCDC59-203ENST00000548126 FOXD4L1Q9NU39 408 aa18.33■□□□□ 0.52
CCDC59-203ENST00000548126 RBM42Q9BTD8 480 aaKnown RBP18.24■□□□□ 0.51
CCDC59-203ENST00000548126 POLA2Q14181 598 aa18.23■□□□□ 0.51
CCDC59-203ENST00000548126 POTEHQ6S545 545 aa18.23■□□□□ 0.51
CCDC59-203ENST00000548126 ZBTB12Q9Y330 459 aaPredicted RBP18.03■□□□□ 0.48
CCDC59-203ENST00000548126 ATF5Q9Y2D1 282 aaPredicted RBP17.95■□□□□ 0.46
CCDC59-203ENST00000548126 ZBTB22O15209 634 aa17.85■□□□□ 0.45
CCDC59-203ENST00000548126 ATXN8OSP0DMR3 200 aa17.83■□□□□ 0.44
CCDC59-203ENST00000548126 CHRDL2Q6WN34 429 aa17.74■□□□□ 0.43
CCDC59-203ENST00000548126 AKT1S1Q96B36 256 aa17.74■□□□□ 0.43
CCDC59-203ENST00000548126 OSCARQ8IYS5 282 aa17.62■□□□□ 0.41
CCDC59-203ENST00000548126 FBLN2P98095 1184 aa17.54■□□□□ 0.4
CCDC59-203ENST00000548126 REM2Q8IYK8 340 aaPredicted RBP17.5■□□□□ 0.39
CCDC59-203ENST00000548126 SPDYE2BA6NHP3 402 aa17.38■□□□□ 0.37
CCDC59-203ENST00000548126 SPDYE6P0CI01 402 aa17.38■□□□□ 0.37
CCDC59-203ENST00000548126 SPDYE2Q495Y8 402 aa17.38■□□□□ 0.37
CCDC59-203ENST00000548126 PITPNM1O00562 1244 aa17.29■□□□□ 0.36
CCDC59-203ENST00000548126 NISCHQ9Y2I1 1504 aa17.26■□□□□ 0.35
CCDC59-203ENST00000548126 PIP4P2Q8N4L2 257 aa17.26■□□□□ 0.35
CCDC59-203ENST00000548126 FXR2P51116 673 aaKnown RBP eCLIP17.16■□□□□ 0.34
CCDC59-203ENST00000548126 MKRN4PQ13434 485 aaPredicted RBP17.15■□□□□ 0.34
CCDC59-203ENST00000548126 ZNF692Q9BU19 519 aaPredicted RBP17.14■□□□□ 0.33
CCDC59-203ENST00000548126 SPDYE1Q8NFV5 336 aaPredicted RBP17.11■□□□□ 0.33
CCDC59-203ENST00000548126 SP7Q8TDD2 431 aaPredicted RBP17.08■□□□□ 0.32
CCDC59-203ENST00000548126 SSUH2Q9Y2M2 353 aa17.05■□□□□ 0.32
CCDC59-203ENST00000548126 HAX1O00165 279 aa17.04■□□□□ 0.32
CCDC59-203ENST00000548126 CSRNP3Q8WYN3 585 aa17.04■□□□□ 0.32
CCDC59-203ENST00000548126 CLEC11AQ9Y240 323 aa17.03■□□□□ 0.32
CCDC59-203ENST00000548126 PRKAR2AP13861 404 aaKnown RBP16.89■□□□□ 0.29
CCDC59-203ENST00000548126 EHMT2Q96KQ7 1210 aa16.86■□□□□ 0.29
CCDC59-203ENST00000548126 PABPN1Q86U42 306 aaKnown RBP eCLIP16.85■□□□□ 0.29
CCDC59-203ENST00000548126 PRR29P0C7W0 189 aa16.77■□□□□ 0.28
CCDC59-203ENST00000548126 C19orf67A6NJJ6 358 aa16.62■□□□□ 0.25
CCDC59-203ENST00000548126 EVX2Q03828 476 aa16.61■□□□□ 0.25
CCDC59-203ENST00000548126 CHADLQ6NUI6 762 aa16.6■□□□□ 0.25
CCDC59-203ENST00000548126 STAG3Q9UJ98 1225 aa16.52■□□□□ 0.24
CCDC59-203ENST00000548126 SPDYE4A6NLX3 237 aa16.46■□□□□ 0.23
CCDC59-203ENST00000548126 FARP1Q9Y4F1 1045 aaPredicted RBP16.44■□□□□ 0.22
CCDC59-203ENST00000548126 ABCC9O60706 1549 aa16.44■□□□□ 0.22
CCDC59-203ENST00000548126 GABBR2O75899 941 aa16.37■□□□□ 0.21
CCDC59-203ENST00000548126 CD44P16070 742 aaKnown RBP16.37■□□□□ 0.21
CCDC59-203ENST00000548126 CLCN6P51797 869 aa16.32■□□□□ 0.2
CCDC59-203ENST00000548126 CREBZFQ9NS37 354 aa16.23■□□□□ 0.19
CCDC59-203ENST00000548126 PAK3O75914 559 aaPredicted RBP16.13■□□□□ 0.17
CCDC59-203ENST00000548126 ZRANB1Q9UGI0 708 aa16.13■□□□□ 0.17
CCDC59-203ENST00000548126 NPM1P06748 294 aaKnown RBP eCLIP16.12■□□□□ 0.17
CCDC59-203ENST00000548126 ZNF579Q8NAF0 562 aaKnown RBP16.11■□□□□ 0.17
CCDC59-203ENST00000548126 DCBLD2Q96PD2 775 aa16.05■□□□□ 0.16
CCDC59-203ENST00000548126 LHX8Q68G74 356 aa16.03■□□□□ 0.16
CCDC59-203ENST00000548126 PROM2Q8N271 834 aa15.97■□□□□ 0.15
CCDC59-203ENST00000548126 POTEIP0CG38 1075 aa15.92■□□□□ 0.14
CCDC59-203ENST00000548126 PLEKHG5O94827 1062 aa15.91■□□□□ 0.14
CCDC59-203ENST00000548126 MNX1P50219 401 aaPredicted RBP15.9■□□□□ 0.14
CCDC59-203ENST00000548126 GALR2O43603 387 aaPredicted RBP15.83■□□□□ 0.12
CCDC59-203ENST00000548126 PHF12Q96QT6 1004 aa15.83■□□□□ 0.12
CCDC59-203ENST00000548126 CCDC180Q9P1Z9 1646 aa15.76■□□□□ 0.11
CCDC59-203ENST00000548126 MIER1Q8N108 512 aa15.75■□□□□ 0.11
CCDC59-203ENST00000548126 TSPYL2Q9H2G4 693 aaPredicted RBP15.7■□□□□ 0.1
CCDC59-203ENST00000548126 PLCD3Q8N3E9 789 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms