RNA–Protein interactions for RNA: ENST00000536823.5

YBX3-206, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 840 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-206ENST00000536823 AEBP2Q6ZN18 517 aaPredicted RBP30.82■■■□□ 2.52
YBX3-206ENST00000536823 CHIC1Q5VXU3 224 aa28.85■■■□□ 2.21
YBX3-206ENST00000536823 SENP3Q9H4L4 574 aaPredicted RBP26.41■■□□□ 1.82
YBX3-206ENST00000536823 PHF23Q9BUL5 403 aaPredicted RBP25.97■■□□□ 1.75
YBX3-206ENST00000536823 FOXD1Q16676 465 aa24.67■■□□□ 1.54
YBX3-206ENST00000536823 POTEDQ86YR6 584 aa23.76■■□□□ 1.39
YBX3-206ENST00000536823 MSH5O43196 834 aa23.35■■□□□ 1.33
YBX3-206ENST00000536823 PIAS4Q8N2W9 510 aaPredicted RBP22.95■■□□□ 1.26
YBX3-206ENST00000536823 PLPPR3Q6T4P5 718 aa22.71■■□□□ 1.23
YBX3-206ENST00000536823 PPP6R1Q9UPN7 881 aa22.6■■□□□ 1.21
YBX3-206ENST00000536823 ADRA2BP18089 450 aa22.51■■□□□ 1.19
YBX3-206ENST00000536823 MAPK8IP2Q13387 824 aaPredicted RBP20.85■□□□□ 0.93
YBX3-206ENST00000536823 DMRT2Q9Y5R5 561 aa20.84■□□□□ 0.93
YBX3-206ENST00000536823 SCAF1Q9H7N4 1312 aaKnown RBP20.63■□□□□ 0.89
YBX3-206ENST00000536823 CACNB1Q02641 598 aaPredicted RBP20.4■□□□□ 0.86
YBX3-206ENST00000536823 DCAF8L1A6NGE4 600 aa20.08■□□□□ 0.81
YBX3-206ENST00000536823 HOXD11P31277 338 aaPredicted RBP19.84■□□□□ 0.77
YBX3-206ENST00000536823 RNF39Q9H2S5 420 aa19.84■□□□□ 0.77
YBX3-206ENST00000536823 PPP4R3CPQ6ZMV5 832 aa19.82■□□□□ 0.76
YBX3-206ENST00000536823 CNKSR2Q8WXI2 1034 aa19.58■□□□□ 0.72
YBX3-206ENST00000536823 RNF216Q9NWF9 866 aaPredicted RBP19.54■□□□□ 0.72
YBX3-206ENST00000536823 C1QBPQ07021 282 aaKnown RBP19.53■□□□□ 0.72
YBX3-206ENST00000536823 DNAJC5BQ9UF47 199 aa19.25■□□□□ 0.67
YBX3-206ENST00000536823 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.94■□□□□ 0.626e-9■□□□□ 9.4
YBX3-206ENST00000536823 NCBP3Q53F19 620 aaKnown RBP18.89■□□□□ 0.61
YBX3-206ENST00000536823 NPM3O75607 178 aaKnown RBP18.61■□□□□ 0.57
YBX3-206ENST00000536823 POTEHQ6S545 545 aa18.52■□□□□ 0.56
YBX3-206ENST00000536823 U3KPZ7 1027 aaPredicted RBP18.46■□□□□ 0.55
YBX3-206ENST00000536823 CAPN15O75808 1086 aa18.4■□□□□ 0.54
YBX3-206ENST00000536823 DSG3P32926 999 aa18.38■□□□□ 0.53
YBX3-206ENST00000536823 SPINK5Q9NQ38 1064 aaPredicted RBP18.37■□□□□ 0.53
YBX3-206ENST00000536823 TRHP20396 242 aaPredicted RBP17.96■□□□□ 0.47
YBX3-206ENST00000536823 ABCB7O75027 752 aa17.92■□□□□ 0.46
YBX3-206ENST00000536823 APLP2Q06481 763 aa17.92■□□□□ 0.46
YBX3-206ENST00000536823 SLC4A2P04920 1241 aa17.9■□□□□ 0.46
YBX3-206ENST00000536823 ZNF219Q9P2Y4 722 aaPredicted RBP17.9■□□□□ 0.46
YBX3-206ENST00000536823 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.75■□□□□ 0.43
YBX3-206ENST00000536823 HNRNPUL2Q1KMD3 747 aaKnown RBP17.75■□□□□ 0.43
YBX3-206ENST00000536823 KCNA4P22459 653 aa17.72■□□□□ 0.43
YBX3-206ENST00000536823 SAMD1Q6SPF0 538 aaPredicted RBP17.62■□□□□ 0.41
YBX3-206ENST00000536823 RBM42Q9BTD8 480 aaKnown RBP17.59■□□□□ 0.41
YBX3-206ENST00000536823 CHRDL2Q6WN34 429 aa17.42■□□□□ 0.38
YBX3-206ENST00000536823 NISCHQ9Y2I1 1504 aa17.33■□□□□ 0.37
YBX3-206ENST00000536823 POLA2Q14181 598 aa17.32■□□□□ 0.36
YBX3-206ENST00000536823 MYCNP04198 464 aaPredicted RBP17.23■□□□□ 0.35
YBX3-206ENST00000536823 SP7Q8TDD2 431 aaPredicted RBP17.08■□□□□ 0.32
YBX3-206ENST00000536823 AKT1S1Q96B36 256 aa17.04■□□□□ 0.32
YBX3-206ENST00000536823 ZBTB12Q9Y330 459 aaPredicted RBP16.94■□□□□ 0.3
YBX3-206ENST00000536823 REM2Q8IYK8 340 aaPredicted RBP16.87■□□□□ 0.29
YBX3-206ENST00000536823 PIP4P2Q8N4L2 257 aa16.87■□□□□ 0.29
YBX3-206ENST00000536823 ATF5Q9Y2D1 282 aaPredicted RBP16.86■□□□□ 0.29
YBX3-206ENST00000536823 OSCARQ8IYS5 282 aa16.81■□□□□ 0.28
YBX3-206ENST00000536823 HAX1O00165 279 aa16.75■□□□□ 0.27
YBX3-206ENST00000536823 FOXD4L1Q9NU39 408 aa16.75■□□□□ 0.27
YBX3-206ENST00000536823 PITPNM1O00562 1244 aa16.72■□□□□ 0.27
YBX3-206ENST00000536823 FXR2P51116 673 aaKnown RBP eCLIP16.67■□□□□ 0.26
YBX3-206ENST00000536823 SLC4A1APQ9BWU0 796 aaKnown RBP16.63■□□□□ 0.25
YBX3-206ENST00000536823 EVX2Q03828 476 aa16.46■□□□□ 0.23
YBX3-206ENST00000536823 SPDYE2BA6NHP3 402 aa16.35■□□□□ 0.21
YBX3-206ENST00000536823 SPDYE6P0CI01 402 aa16.35■□□□□ 0.21
YBX3-206ENST00000536823 SPDYE2Q495Y8 402 aa16.35■□□□□ 0.21
YBX3-206ENST00000536823 PRKAR2AP13861 404 aaKnown RBP16.29■□□□□ 0.2
YBX3-206ENST00000536823 FBLN2P98095 1184 aa16.29■□□□□ 0.2
YBX3-206ENST00000536823 ZBTB22O15209 634 aa16.27■□□□□ 0.2
YBX3-206ENST00000536823 ATXN8OSP0DMR3 200 aa16.26■□□□□ 0.19
YBX3-206ENST00000536823 CLEC11AQ9Y240 323 aa16.26■□□□□ 0.19
YBX3-206ENST00000536823 SPDYE1Q8NFV5 336 aaPredicted RBP16.22■□□□□ 0.19
YBX3-206ENST00000536823 C19orf67A6NJJ6 358 aa16.16■□□□□ 0.18
YBX3-206ENST00000536823 GABBR2O75899 941 aa16.08■□□□□ 0.16
YBX3-206ENST00000536823 ZNF692Q9BU19 519 aaPredicted RBP16.08■□□□□ 0.16
YBX3-206ENST00000536823 MKRN4PQ13434 485 aaPredicted RBP16.05■□□□□ 0.16
YBX3-206ENST00000536823 SSUH2Q9Y2M2 353 aa16.05■□□□□ 0.16
YBX3-206ENST00000536823 LHX8Q68G74 356 aa16.02■□□□□ 0.16
YBX3-206ENST00000536823 CHADLQ6NUI6 762 aa15.99■□□□□ 0.15
YBX3-206ENST00000536823 PRR29P0C7W0 189 aa15.88■□□□□ 0.13
YBX3-206ENST00000536823 PABPN1Q86U42 306 aaKnown RBP eCLIP15.82■□□□□ 0.123e-28■■■□□ 15
YBX3-206ENST00000536823 CD44P16070 742 aaKnown RBP15.75■□□□□ 0.11
YBX3-206ENST00000536823 POTEIP0CG38 1075 aa15.71■□□□□ 0.11
YBX3-206ENST00000536823 FARP1Q9Y4F1 1045 aaPredicted RBP15.67■□□□□ 0.1
YBX3-206ENST00000536823 CLCN6P51797 869 aa15.62■□□□□ 0.09
YBX3-206ENST00000536823 DCBLD2Q96PD2 775 aa15.55■□□□□ 0.08
YBX3-206ENST00000536823 PLSCR2Q9NRY7 297 aa15.52■□□□□ 0.08
YBX3-206ENST00000536823 CCDC180Q9P1Z9 1646 aa15.49■□□□□ 0.07
YBX3-206ENST00000536823 ZNF579Q8NAF0 562 aaKnown RBP15.45■□□□□ 0.06
YBX3-206ENST00000536823 ZRANB1Q9UGI0 708 aa15.44■□□□□ 0.06
YBX3-206ENST00000536823 CREBZFQ9NS37 354 aa15.32■□□□□ 0.04
YBX3-206ENST00000536823 GALR2O43603 387 aaPredicted RBP15.31■□□□□ 0.04
YBX3-206ENST00000536823 STAG3Q9UJ98 1225 aa15.27■□□□□ 0.04
YBX3-206ENST00000536823 OTUD5Q96G74 571 aa15.25■□□□□ 0.03
YBX3-206ENST00000536823 ABCC9O60706 1549 aa15.24■□□□□ 0.03
YBX3-206ENST00000536823 PAK3O75914 559 aaPredicted RBP15.21■□□□□ 0.03
YBX3-206ENST00000536823 POTEB2H3BUK9 544 aa15.18■□□□□ 0.02
YBX3-206ENST00000536823 PHF12Q96QT6 1004 aa15.16■□□□□ 0.02
YBX3-206ENST00000536823 POTEMA6NI47 508 aa15.12■□□□□ 0.01
YBX3-206ENST00000536823 NPM1P06748 294 aaKnown RBP eCLIP15.06■□□□□ 0
YBX3-206ENST00000536823 POTEGQ6S5H5 508 aa15.06■□□□□ 0
YBX3-206ENST00000536823 PELP1Q8IZL8 1130 aaKnown RBP15.05■□□□□ -0
YBX3-206ENST00000536823 SPDYE4A6NLX3 237 aa15.02■□□□□ -0
YBX3-206ENST00000536823 CSRNP3Q8WYN3 585 aa14.99□□□□□ -0.01
YBX3-206ENST00000536823 METRNQ9UJH8 293 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms