RNA–Protein interactions for RNA: ENST00000533910.5

CHKA-208, Transcript of choline kinase alpha, humanhuman

TSL 3

Gene CHKA, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHKA-208ENST00000533910 AEBP2Q6ZN18 517 aaPredicted RBP20.86■□□□□ 0.93
CHKA-208ENST00000533910 CHIC1Q5VXU3 224 aa19.94■□□□□ 0.78
CHKA-208ENST00000533910 SENP3Q9H4L4 574 aaPredicted RBP17.9■□□□□ 0.46
CHKA-208ENST00000533910 PHF23Q9BUL5 403 aaPredicted RBP17.63■□□□□ 0.41
CHKA-208ENST00000533910 FOXD1Q16676 465 aa16.6■□□□□ 0.25
CHKA-208ENST00000533910 PLPPR3Q6T4P5 718 aa16.01■□□□□ 0.15
CHKA-208ENST00000533910 MSH5O43196 834 aa15.61■□□□□ 0.09
CHKA-208ENST00000533910 PIAS4Q8N2W9 510 aaPredicted RBP15.58■□□□□ 0.08
CHKA-208ENST00000533910 PPP6R1Q9UPN7 881 aa15.54■□□□□ 0.08
CHKA-208ENST00000533910 ADRA2BP18089 450 aa15.51■□□□□ 0.07
CHKA-208ENST00000533910 POTEDQ86YR6 584 aa15.04■□□□□ -0
CHKA-208ENST00000533910 SCAF1Q9H7N4 1312 aaKnown RBP14.33□□□□□ -0.12
CHKA-208ENST00000533910 MAPK8IP2Q13387 824 aaPredicted RBP14.22□□□□□ -0.13
CHKA-208ENST00000533910 DMRT2Q9Y5R5 561 aa14.17□□□□□ -0.14
CHKA-208ENST00000533910 PPP4R3CPQ6ZMV5 832 aa14□□□□□ -0.17
CHKA-208ENST00000533910 CNKSR2Q8WXI2 1034 aa13.76□□□□□ -0.21
CHKA-208ENST00000533910 HOXD11P31277 338 aaPredicted RBP13.67□□□□□ -0.22
CHKA-208ENST00000533910 KCNA4P22459 653 aa13.63□□□□□ -0.23
CHKA-208ENST00000533910 DCAF8L1A6NGE4 600 aa13.62□□□□□ -0.23
CHKA-208ENST00000533910 RNF216Q9NWF9 866 aaPredicted RBP13.62□□□□□ -0.23
CHKA-208ENST00000533910 NCBP3Q53F19 620 aaKnown RBP13.57□□□□□ -0.24
CHKA-208ENST00000533910 CACNB1Q02641 598 aaPredicted RBP13.33□□□□□ -0.28
CHKA-208ENST00000533910 EHMT2Q96KQ7 1210 aa13.33□□□□□ -0.28
CHKA-208ENST00000533910 NPM3O75607 178 aaKnown RBP13.28□□□□□ -0.28
CHKA-208ENST00000533910 RNF39Q9H2S5 420 aa13.27□□□□□ -0.29
CHKA-208ENST00000533910 DNAJC5BQ9UF47 199 aa13.25□□□□□ -0.29
CHKA-208ENST00000533910 C1QBPQ07021 282 aaKnown RBP13.13□□□□□ -0.31
CHKA-208ENST00000533910 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.08□□□□□ -0.321e-6■■□□□ 13.4
CHKA-208ENST00000533910 SLC4A1APQ9BWU0 796 aaKnown RBP13□□□□□ -0.33
CHKA-208ENST00000533910 NISCHQ9Y2I1 1504 aa12.97□□□□□ -0.33
CHKA-208ENST00000533910 CSRNP3Q8WYN3 585 aa12.88□□□□□ -0.35
CHKA-208ENST00000533910 U3KPZ7 1027 aaPredicted RBP12.74□□□□□ -0.37
CHKA-208ENST00000533910 SLC4A2P04920 1241 aa12.63□□□□□ -0.39
CHKA-208ENST00000533910 ZBTB22O15209 634 aa12.6□□□□□ -0.39
CHKA-208ENST00000533910 CAPN15O75808 1086 aa12.57□□□□□ -0.4
CHKA-208ENST00000533910 APLP2Q06481 763 aa12.54□□□□□ -0.4
CHKA-208ENST00000533910 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.53□□□□□ -0.4
CHKA-208ENST00000533910 HNRNPUL2Q1KMD3 747 aaKnown RBP12.53□□□□□ -0.4
CHKA-208ENST00000533910 SPINK5Q9NQ38 1064 aaPredicted RBP12.52□□□□□ -0.41
CHKA-208ENST00000533910 DSG3P32926 999 aa12.44□□□□□ -0.42
CHKA-208ENST00000533910 SAMD1Q6SPF0 538 aaPredicted RBP12.43□□□□□ -0.42
CHKA-208ENST00000533910 ZNF219Q9P2Y4 722 aaPredicted RBP12.39□□□□□ -0.43
CHKA-208ENST00000533910 TRHP20396 242 aaPredicted RBP12.37□□□□□ -0.43
CHKA-208ENST00000533910 MYCNP04198 464 aaPredicted RBP12.33□□□□□ -0.44
CHKA-208ENST00000533910 FOXD4L1Q9NU39 408 aa12.28□□□□□ -0.44
CHKA-208ENST00000533910 ABCB7O75027 752 aa12.23□□□□□ -0.45
CHKA-208ENST00000533910 POLA2Q14181 598 aa12.05□□□□□ -0.48
CHKA-208ENST00000533910 RBM42Q9BTD8 480 aaKnown RBP11.95□□□□□ -0.5
CHKA-208ENST00000533910 ATF5Q9Y2D1 282 aaPredicted RBP11.94□□□□□ -0.5
CHKA-208ENST00000533910 ZBTB12Q9Y330 459 aaPredicted RBP11.89□□□□□ -0.51
CHKA-208ENST00000533910 ATXN8OSP0DMR3 200 aa11.87□□□□□ -0.51
CHKA-208ENST00000533910 POTEHQ6S545 545 aa11.84□□□□□ -0.51
CHKA-208ENST00000533910 AKT1S1Q96B36 256 aa11.66□□□□□ -0.54
CHKA-208ENST00000533910 OSCARQ8IYS5 282 aa11.63□□□□□ -0.55
CHKA-208ENST00000533910 FKBP8Q14318 412 aa11.61□□□□□ -0.55
CHKA-208ENST00000533910 CHRDL2Q6WN34 429 aa11.61□□□□□ -0.55
CHKA-208ENST00000533910 FBLN2P98095 1184 aa11.6□□□□□ -0.55
CHKA-208ENST00000533910 REM2Q8IYK8 340 aaPredicted RBP11.51□□□□□ -0.57
CHKA-208ENST00000533910 RTN4Q9NQC3 1192 aaKnown RBP11.49□□□□□ -0.57
CHKA-208ENST00000533910 SPDYE2BA6NHP3 402 aa11.48□□□□□ -0.57
CHKA-208ENST00000533910 SPDYE6P0CI01 402 aa11.48□□□□□ -0.57
CHKA-208ENST00000533910 SPDYE2Q495Y8 402 aa11.48□□□□□ -0.57
CHKA-208ENST00000533910 CCDC180Q9P1Z9 1646 aa11.4□□□□□ -0.58
CHKA-208ENST00000533910 MKRN4PQ13434 485 aaPredicted RBP11.4□□□□□ -0.58
CHKA-208ENST00000533910 PITPNM1O00562 1244 aa11.37□□□□□ -0.59
CHKA-208ENST00000533910 ZNF692Q9BU19 519 aaPredicted RBP11.35□□□□□ -0.59
CHKA-208ENST00000533910 PIP4P2Q8N4L2 257 aa11.33□□□□□ -0.6
CHKA-208ENST00000533910 AMER1Q5JTC6 1135 aaPredicted RBP11.32□□□□□ -0.6
CHKA-208ENST00000533910 SSUH2Q9Y2M2 353 aa11.29□□□□□ -0.6
CHKA-208ENST00000533910 FXR2P51116 673 aaKnown RBP eCLIP11.28□□□□□ -0.6
CHKA-208ENST00000533910 SPDYE1Q8NFV5 336 aaPredicted RBP11.27□□□□□ -0.61
CHKA-208ENST00000533910 CLEC11AQ9Y240 323 aa11.24□□□□□ -0.61
CHKA-208ENST00000533910 PABPN1Q86U42 306 aaKnown RBP eCLIP11.16□□□□□ -0.62
CHKA-208ENST00000533910 HAX1O00165 279 aa11.14□□□□□ -0.63
CHKA-208ENST00000533910 SP7Q8TDD2 431 aaPredicted RBP11.13□□□□□ -0.63
CHKA-208ENST00000533910 PRKAR2AP13861 404 aaKnown RBP11.11□□□□□ -0.63
CHKA-208ENST00000533910 SLC24A1O60721 1099 aa11.09□□□□□ -0.63
CHKA-208ENST00000533910 PRR29P0C7W0 189 aa11.08□□□□□ -0.64
CHKA-208ENST00000533910 SPDYE4A6NLX3 237 aa11.07□□□□□ -0.64
CHKA-208ENST00000533910 CHADLQ6NUI6 762 aa10.96□□□□□ -0.65
CHKA-208ENST00000533910 STAG3Q9UJ98 1225 aa10.94□□□□□ -0.66
CHKA-208ENST00000533910 ZCCHC6Q5VYS8 1495 aaKnown RBP10.93□□□□□ -0.66
CHKA-208ENST00000533910 C19orf67A6NJJ6 358 aa10.91□□□□□ -0.66
CHKA-208ENST00000533910 EVX2Q03828 476 aa10.91□□□□□ -0.66
CHKA-208ENST00000533910 PROM2Q8N271 834 aa10.89□□□□□ -0.67
CHKA-208ENST00000533910 FBXO3Q9UK99 471 aa10.88□□□□□ -0.67
CHKA-208ENST00000533910 FARP1Q9Y4F1 1045 aaPredicted RBP10.84□□□□□ -0.67
CHKA-208ENST00000533910 VASPP50552 380 aaPredicted RBP10.83□□□□□ -0.68
CHKA-208ENST00000533910 IFNLR1Q8IU57 520 aaPredicted RBP10.79□□□□□ -0.68
CHKA-208ENST00000533910 DCAF1Q9Y4B6 1507 aa10.79□□□□□ -0.68
CHKA-208ENST00000533910 CD44P16070 742 aaKnown RBP10.77□□□□□ -0.69
CHKA-208ENST00000533910 CREBZFQ9NS37 354 aa10.75□□□□□ -0.69
CHKA-208ENST00000533910 GABBR2O75899 941 aa10.73□□□□□ -0.69
CHKA-208ENST00000533910 CLCN6P51797 869 aa10.7□□□□□ -0.7
CHKA-208ENST00000533910 MYO15BQ96JP2 1530 aa10.67□□□□□ -0.7
CHKA-208ENST00000533910 NPM1P06748 294 aaKnown RBP eCLIP10.65□□□□□ -0.7
CHKA-208ENST00000533910 DCAF8L2P0C7V8 631 aa10.63□□□□□ -0.71
CHKA-208ENST00000533910 ZRANB1Q9UGI0 708 aa10.63□□□□□ -0.71
CHKA-208ENST00000533910 PAK3O75914 559 aaPredicted RBP10.62□□□□□ -0.71
CHKA-208ENST00000533910 PKD2Q13563 968 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms