RNA–Protein interactions for RNA: ENST00000525504.5

CCDC90B-204, Transcript of coiled-coil domain containing 90B, humanhuman

TSL 3

Gene CCDC90B, Length 1,232 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC90B-204ENST00000525504 AEBP2Q6ZN18 517 aaPredicted RBP24.27■■□□□ 1.48
CCDC90B-204ENST00000525504 CHIC1Q5VXU3 224 aa22.78■■□□□ 1.24
CCDC90B-204ENST00000525504 SENP3Q9H4L4 574 aaPredicted RBP20.94■□□□□ 0.94
CCDC90B-204ENST00000525504 PHF23Q9BUL5 403 aaPredicted RBP20.49■□□□□ 0.87
CCDC90B-204ENST00000525504 FOXD1Q16676 465 aa19.53■□□□□ 0.72
CCDC90B-204ENST00000525504 POTEDQ86YR6 584 aa19.43■□□□□ 0.7
CCDC90B-204ENST00000525504 MSH5O43196 834 aa18.67■□□□□ 0.58
CCDC90B-204ENST00000525504 PIAS4Q8N2W9 510 aaPredicted RBP18.06■□□□□ 0.48
CCDC90B-204ENST00000525504 PPP6R1Q9UPN7 881 aa17.63■□□□□ 0.41
CCDC90B-204ENST00000525504 PLPPR3Q6T4P5 718 aa17.57■□□□□ 0.4
CCDC90B-204ENST00000525504 ADRA2BP18089 450 aa17.51■□□□□ 0.39
CCDC90B-204ENST00000525504 DMRT2Q9Y5R5 561 aa16.47■□□□□ 0.23
CCDC90B-204ENST00000525504 CACNB1Q02641 598 aaPredicted RBP16.4■□□□□ 0.22
CCDC90B-204ENST00000525504 MAPK8IP2Q13387 824 aaPredicted RBP16.29■□□□□ 0.2
CCDC90B-204ENST00000525504 SCAF1Q9H7N4 1312 aaKnown RBP16.18■□□□□ 0.18
CCDC90B-204ENST00000525504 RNF39Q9H2S5 420 aa15.82■□□□□ 0.12
CCDC90B-204ENST00000525504 DCAF8L1A6NGE4 600 aa15.71■□□□□ 0.11
CCDC90B-204ENST00000525504 HOXD11P31277 338 aaPredicted RBP15.59■□□□□ 0.09
CCDC90B-204ENST00000525504 C1QBPQ07021 282 aaKnown RBP15.59■□□□□ 0.09
CCDC90B-204ENST00000525504 DNAJC5BQ9UF47 199 aa15.33■□□□□ 0.04
CCDC90B-204ENST00000525504 RNF216Q9NWF9 866 aaPredicted RBP15.26■□□□□ 0.03
CCDC90B-204ENST00000525504 PPP4R3CPQ6ZMV5 832 aa15.25■□□□□ 0.03
CCDC90B-204ENST00000525504 CNKSR2Q8WXI2 1034 aa15.2■□□□□ 0.02
CCDC90B-204ENST00000525504 POTEHQ6S545 545 aa15.09■□□□□ 0.01
CCDC90B-204ENST00000525504 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.78□□□□□ -0.04
CCDC90B-204ENST00000525504 NISCHQ9Y2I1 1504 aa14.69□□□□□ -0.06
CCDC90B-204ENST00000525504 DSG3P32926 999 aa14.53□□□□□ -0.08
CCDC90B-204ENST00000525504 NCBP3Q53F19 620 aaKnown RBP14.5□□□□□ -0.09
CCDC90B-204ENST00000525504 CAPN15O75808 1086 aa14.39□□□□□ -0.11
CCDC90B-204ENST00000525504 U3KPZ7 1027 aaPredicted RBP14.39□□□□□ -0.11
CCDC90B-204ENST00000525504 SPINK5Q9NQ38 1064 aaPredicted RBP14.36□□□□□ -0.11
CCDC90B-204ENST00000525504 NPM3O75607 178 aaKnown RBP14.22□□□□□ -0.13
CCDC90B-204ENST00000525504 APLP2Q06481 763 aa14.04□□□□□ -0.16
CCDC90B-204ENST00000525504 ZNF219Q9P2Y4 722 aaPredicted RBP14.02□□□□□ -0.17
CCDC90B-204ENST00000525504 RBM42Q9BTD8 480 aaKnown RBP13.97□□□□□ -0.17
CCDC90B-204ENST00000525504 TRHP20396 242 aaPredicted RBP13.96□□□□□ -0.17
CCDC90B-204ENST00000525504 ABCB7O75027 752 aa13.94□□□□□ -0.18
CCDC90B-204ENST00000525504 CHRDL2Q6WN34 429 aa13.89□□□□□ -0.19
CCDC90B-204ENST00000525504 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.83□□□□□ -0.2
CCDC90B-204ENST00000525504 HNRNPUL2Q1KMD3 747 aaKnown RBP13.83□□□□□ -0.2
CCDC90B-204ENST00000525504 SP7Q8TDD2 431 aaPredicted RBP13.8□□□□□ -0.2
CCDC90B-204ENST00000525504 SLC4A2P04920 1241 aa13.77□□□□□ -0.21
CCDC90B-204ENST00000525504 SAMD1Q6SPF0 538 aaPredicted RBP13.68□□□□□ -0.22
CCDC90B-204ENST00000525504 AKT1S1Q96B36 256 aa13.46□□□□□ -0.25
CCDC90B-204ENST00000525504 POLA2Q14181 598 aa13.44□□□□□ -0.26
CCDC90B-204ENST00000525504 PIP4P2Q8N4L2 257 aa13.38□□□□□ -0.27
CCDC90B-204ENST00000525504 HAX1O00165 279 aa13.32□□□□□ -0.28
CCDC90B-204ENST00000525504 REM2Q8IYK8 340 aaPredicted RBP13.28□□□□□ -0.28
CCDC90B-204ENST00000525504 KCNA4P22459 653 aa13.26□□□□□ -0.29
CCDC90B-204ENST00000525504 ZBTB12Q9Y330 459 aaPredicted RBP13.23□□□□□ -0.29
CCDC90B-204ENST00000525504 MYCNP04198 464 aaPredicted RBP13.22□□□□□ -0.29
CCDC90B-204ENST00000525504 FXR2P51116 673 aaKnown RBP eCLIP13.22□□□□□ -0.29
CCDC90B-204ENST00000525504 PITPNM1O00562 1244 aa13.13□□□□□ -0.31
CCDC90B-204ENST00000525504 EVX2Q03828 476 aa13.05□□□□□ -0.32
CCDC90B-204ENST00000525504 OSCARQ8IYS5 282 aa13.02□□□□□ -0.33
CCDC90B-204ENST00000525504 ABCC9O60706 1549 aa13.02□□□□□ -0.33
CCDC90B-204ENST00000525504 CCDC180Q9P1Z9 1646 aa12.98□□□□□ -0.33
CCDC90B-204ENST00000525504 LHX8Q68G74 356 aa12.91□□□□□ -0.34
CCDC90B-204ENST00000525504 ATF5Q9Y2D1 282 aaPredicted RBP12.86□□□□□ -0.35
CCDC90B-204ENST00000525504 C19orf67A6NJJ6 358 aa12.82□□□□□ -0.36
CCDC90B-204ENST00000525504 GABBR2O75899 941 aa12.78□□□□□ -0.36
CCDC90B-204ENST00000525504 PRKAR2AP13861 404 aaKnown RBP12.78□□□□□ -0.36
CCDC90B-204ENST00000525504 SPDYE2BA6NHP3 402 aa12.72□□□□□ -0.37
CCDC90B-204ENST00000525504 SPDYE6P0CI01 402 aa12.72□□□□□ -0.37
CCDC90B-204ENST00000525504 SPDYE2Q495Y8 402 aa12.72□□□□□ -0.37
CCDC90B-204ENST00000525504 SPDYE1Q8NFV5 336 aaPredicted RBP12.67□□□□□ -0.38
CCDC90B-204ENST00000525504 PLSCR2Q9NRY7 297 aa12.65□□□□□ -0.38
CCDC90B-204ENST00000525504 FOXD4L1Q9NU39 408 aa12.65□□□□□ -0.38
CCDC90B-204ENST00000525504 CLEC11AQ9Y240 323 aa12.59□□□□□ -0.39
CCDC90B-204ENST00000525504 FBLN2P98095 1184 aa12.52□□□□□ -0.41
CCDC90B-204ENST00000525504 CLCN6P51797 869 aa12.49□□□□□ -0.41
CCDC90B-204ENST00000525504 POTEIP0CG38 1075 aa12.48□□□□□ -0.41
CCDC90B-204ENST00000525504 SSUH2Q9Y2M2 353 aa12.45□□□□□ -0.42
CCDC90B-204ENST00000525504 ATXN8OSP0DMR3 200 aa12.42□□□□□ -0.42
CCDC90B-204ENST00000525504 CHADLQ6NUI6 762 aa12.41□□□□□ -0.42
CCDC90B-204ENST00000525504 DCAF8L2P0C7V8 631 aa12.4□□□□□ -0.42
CCDC90B-204ENST00000525504 RB1CC1Q8TDY2 1594 aa12.39□□□□□ -0.43
CCDC90B-204ENST00000525504 ZNF692Q9BU19 519 aaPredicted RBP12.38□□□□□ -0.43
CCDC90B-204ENST00000525504 NACADO15069 1562 aa12.38□□□□□ -0.43
CCDC90B-204ENST00000525504 SLC4A1APQ9BWU0 796 aaKnown RBP12.36□□□□□ -0.43
CCDC90B-204ENST00000525504 PRR29P0C7W0 189 aa12.33□□□□□ -0.44
CCDC90B-204ENST00000525504 CD44P16070 742 aaKnown RBP12.33□□□□□ -0.44
CCDC90B-204ENST00000525504 MYO15BQ96JP2 1530 aa12.32□□□□□ -0.44
CCDC90B-204ENST00000525504 DCBLD2Q96PD2 775 aa12.28□□□□□ -0.44
CCDC90B-204ENST00000525504 MKRN4PQ13434 485 aaPredicted RBP12.27□□□□□ -0.45
CCDC90B-204ENST00000525504 PABPN1Q86U42 306 aaKnown RBP eCLIP12.23□□□□□ -0.45
CCDC90B-204ENST00000525504 FARP1Q9Y4F1 1045 aaPredicted RBP12.23□□□□□ -0.45
CCDC90B-204ENST00000525504 POTEMA6NI47 508 aa12.18□□□□□ -0.46
CCDC90B-204ENST00000525504 ZBTB22O15209 634 aa12.18□□□□□ -0.46
CCDC90B-204ENST00000525504 OTUD5Q96G74 571 aa12.18□□□□□ -0.46
CCDC90B-204ENST00000525504 ZCCHC6Q5VYS8 1495 aaKnown RBP12.17□□□□□ -0.46
CCDC90B-204ENST00000525504 PCDH10Q9P2E7 1040 aa12.17□□□□□ -0.46
CCDC90B-204ENST00000525504 DCAF1Q9Y4B6 1507 aa12.16□□□□□ -0.46
CCDC90B-204ENST00000525504 ZNF579Q8NAF0 562 aaKnown RBP12.16□□□□□ -0.46
CCDC90B-204ENST00000525504 POTEGQ6S5H5 508 aa12.12□□□□□ -0.47
CCDC90B-204ENST00000525504 BICRAQ9NZM4 1560 aa12.05□□□□□ -0.48
CCDC90B-204ENST00000525504 POTEB2H3BUK9 544 aa12.03□□□□□ -0.48
CCDC90B-204ENST00000525504 ZRANB1Q9UGI0 708 aa12.03□□□□□ -0.48
CCDC90B-204ENST00000525504 GALR2O43603 387 aaPredicted RBP11.99□□□□□ -0.49
CCDC90B-204ENST00000525504 SHROOM4Q9ULL8 1493 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms