RNA–Protein interactions for RNA: ENST00000518716.1

PABPC1-207, Transcript of poly(A) binding protein cytoplasmic 1, humanhuman

TSL 2

Gene PABPC1, Length 694 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPC1-207ENST00000518716 AEBP2Q6ZN18 517 aaPredicted RBP27.56■■■□□ 2
PABPC1-207ENST00000518716 CHIC1Q5VXU3 224 aa25.63■■□□□ 1.69
PABPC1-207ENST00000518716 SENP3Q9H4L4 574 aaPredicted RBP23.5■■□□□ 1.35
PABPC1-207ENST00000518716 PHF23Q9BUL5 403 aaPredicted RBP23.14■■□□□ 1.29
PABPC1-207ENST00000518716 FOXD1Q16676 465 aa22.03■■□□□ 1.12
PABPC1-207ENST00000518716 POTEDQ86YR6 584 aa21.23■□□□□ 0.99
PABPC1-207ENST00000518716 MSH5O43196 834 aa20.74■□□□□ 0.91
PABPC1-207ENST00000518716 PIAS4Q8N2W9 510 aaPredicted RBP20.42■□□□□ 0.86
PABPC1-207ENST00000518716 PPP6R1Q9UPN7 881 aa20.21■□□□□ 0.83
PABPC1-207ENST00000518716 PLPPR3Q6T4P5 718 aa20.15■□□□□ 0.82
PABPC1-207ENST00000518716 ADRA2BP18089 450 aa20.1■□□□□ 0.81
PABPC1-207ENST00000518716 MAPK8IP2Q13387 824 aaPredicted RBP18.64■□□□□ 0.57
PABPC1-207ENST00000518716 DMRT2Q9Y5R5 561 aa18.58■□□□□ 0.56
PABPC1-207ENST00000518716 SCAF1Q9H7N4 1312 aaKnown RBP18.26■□□□□ 0.51
PABPC1-207ENST00000518716 CACNB1Q02641 598 aaPredicted RBP18.13■□□□□ 0.49
PABPC1-207ENST00000518716 DCAF8L1A6NGE4 600 aa17.81■□□□□ 0.44
PABPC1-207ENST00000518716 RNF39Q9H2S5 420 aa17.7■□□□□ 0.42
PABPC1-207ENST00000518716 HOXD11P31277 338 aaPredicted RBP17.68■□□□□ 0.42
PABPC1-207ENST00000518716 PPP4R3CPQ6ZMV5 832 aa17.62■□□□□ 0.41
PABPC1-207ENST00000518716 CNKSR2Q8WXI2 1034 aa17.39■□□□□ 0.37
PABPC1-207ENST00000518716 RNF216Q9NWF9 866 aaPredicted RBP17.38■□□□□ 0.37
PABPC1-207ENST00000518716 C1QBPQ07021 282 aaKnown RBP17.37■□□□□ 0.37
PABPC1-207ENST00000518716 DNAJC5BQ9UF47 199 aa17.13■□□□□ 0.33
PABPC1-207ENST00000518716 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.81■□□□□ 0.28
PABPC1-207ENST00000518716 NCBP3Q53F19 620 aaKnown RBP16.71■□□□□ 0.27
PABPC1-207ENST00000518716 NPM3O75607 178 aaKnown RBP16.57■□□□□ 0.24
PABPC1-207ENST00000518716 POTEHQ6S545 545 aa16.51■□□□□ 0.23
PABPC1-207ENST00000518716 U3KPZ7 1027 aaPredicted RBP16.46■□□□□ 0.23
PABPC1-207ENST00000518716 DSG3P32926 999 aa16.4■□□□□ 0.22
PABPC1-207ENST00000518716 SPINK5Q9NQ38 1064 aaPredicted RBP16.39■□□□□ 0.21
PABPC1-207ENST00000518716 CAPN15O75808 1086 aa16.33■□□□□ 0.2
PABPC1-207ENST00000518716 SLC4A2P04920 1241 aa15.99■□□□□ 0.15
PABPC1-207ENST00000518716 ABCB7O75027 752 aa15.95■□□□□ 0.14
PABPC1-207ENST00000518716 TRHP20396 242 aaPredicted RBP15.94■□□□□ 0.14
PABPC1-207ENST00000518716 ZNF219Q9P2Y4 722 aaPredicted RBP15.86■□□□□ 0.13
PABPC1-207ENST00000518716 KCNA4P22459 653 aa15.79■□□□□ 0.12
PABPC1-207ENST00000518716 APLP2Q06481 763 aa15.79■□□□□ 0.12
PABPC1-207ENST00000518716 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.69■□□□□ 0.1
PABPC1-207ENST00000518716 HNRNPUL2Q1KMD3 747 aaKnown RBP15.69■□□□□ 0.1
PABPC1-207ENST00000518716 SAMD1Q6SPF0 538 aaPredicted RBP15.6■□□□□ 0.09
PABPC1-207ENST00000518716 RBM42Q9BTD8 480 aaKnown RBP15.58■□□□□ 0.08
PABPC1-207ENST00000518716 NISCHQ9Y2I1 1504 aa15.53■□□□□ 0.08
PABPC1-207ENST00000518716 CHRDL2Q6WN34 429 aa15.51■□□□□ 0.07
PABPC1-207ENST00000518716 POLA2Q14181 598 aa15.41■□□□□ 0.06
PABPC1-207ENST00000518716 MYCNP04198 464 aaPredicted RBP15.29■□□□□ 0.04
PABPC1-207ENST00000518716 SP7Q8TDD2 431 aaPredicted RBP15.22■□□□□ 0.03
PABPC1-207ENST00000518716 AKT1S1Q96B36 256 aa15.14■□□□□ 0.01
PABPC1-207ENST00000518716 ATF5Q9Y2D1 282 aaPredicted RBP15.07■□□□□ 0
PABPC1-207ENST00000518716 PIP4P2Q8N4L2 257 aa15.05■□□□□ -0
PABPC1-207ENST00000518716 REM2Q8IYK8 340 aaPredicted RBP15.03■□□□□ -0
PABPC1-207ENST00000518716 ZBTB12Q9Y330 459 aaPredicted RBP14.98□□□□□ -0.01
PABPC1-207ENST00000518716 OSCARQ8IYS5 282 aa14.96□□□□□ -0.01
PABPC1-207ENST00000518716 PITPNM1O00562 1244 aa14.9□□□□□ -0.02
PABPC1-207ENST00000518716 HAX1O00165 279 aa14.88□□□□□ -0.03
PABPC1-207ENST00000518716 FXR2P51116 673 aaKnown RBP eCLIP14.86□□□□□ -0.03
PABPC1-207ENST00000518716 FOXD4L1Q9NU39 408 aa14.85□□□□□ -0.03
PABPC1-207ENST00000518716 EVX2Q03828 476 aa14.75□□□□□ -0.05
PABPC1-207ENST00000518716 SLC4A1APQ9BWU0 796 aaKnown RBP14.74□□□□□ -0.05
PABPC1-207ENST00000518716 ZBTB22O15209 634 aa14.55□□□□□ -0.08
PABPC1-207ENST00000518716 SPDYE2BA6NHP3 402 aa14.51□□□□□ -0.09
PABPC1-207ENST00000518716 SPDYE6P0CI01 402 aa14.51□□□□□ -0.09
PABPC1-207ENST00000518716 SPDYE2Q495Y8 402 aa14.51□□□□□ -0.09
PABPC1-207ENST00000518716 PRKAR2AP13861 404 aaKnown RBP14.48□□□□□ -0.09
PABPC1-207ENST00000518716 C19orf67A6NJJ6 358 aa14.41□□□□□ -0.1
PABPC1-207ENST00000518716 ATXN8OSP0DMR3 200 aa14.41□□□□□ -0.1
PABPC1-207ENST00000518716 CLEC11AQ9Y240 323 aa14.4□□□□□ -0.1
PABPC1-207ENST00000518716 FBLN2P98095 1184 aa14.39□□□□□ -0.11
PABPC1-207ENST00000518716 SPDYE1Q8NFV5 336 aaPredicted RBP14.38□□□□□ -0.11
PABPC1-207ENST00000518716 MKRN4PQ13434 485 aaPredicted RBP14.34□□□□□ -0.11
PABPC1-207ENST00000518716 GABBR2O75899 941 aa14.32□□□□□ -0.12
PABPC1-207ENST00000518716 SSUH2Q9Y2M2 353 aa14.3□□□□□ -0.12
PABPC1-207ENST00000518716 ABCC9O60706 1549 aa14.27□□□□□ -0.12
PABPC1-207ENST00000518716 LHX8Q68G74 356 aa14.26□□□□□ -0.13
PABPC1-207ENST00000518716 ZNF692Q9BU19 519 aaPredicted RBP14.25□□□□□ -0.13
PABPC1-207ENST00000518716 CHADLQ6NUI6 762 aa14.23□□□□□ -0.13
PABPC1-207ENST00000518716 PRR29P0C7W0 189 aa14.07□□□□□ -0.16
PABPC1-207ENST00000518716 POTEIP0CG38 1075 aa14.07□□□□□ -0.16
PABPC1-207ENST00000518716 PABPN1Q86U42 306 aaKnown RBP eCLIP14.04□□□□□ -0.16
PABPC1-207ENST00000518716 CCDC180Q9P1Z9 1646 aa14□□□□□ -0.17
PABPC1-207ENST00000518716 CD44P16070 742 aaKnown RBP13.99□□□□□ -0.17
PABPC1-207ENST00000518716 FARP1Q9Y4F1 1045 aaPredicted RBP13.94□□□□□ -0.18
PABPC1-207ENST00000518716 CLCN6P51797 869 aa13.81□□□□□ -0.2
PABPC1-207ENST00000518716 PLSCR2Q9NRY7 297 aa13.78□□□□□ -0.2
PABPC1-207ENST00000518716 DCBLD2Q96PD2 775 aa13.77□□□□□ -0.21
PABPC1-207ENST00000518716 ZNF579Q8NAF0 562 aaKnown RBP13.75□□□□□ -0.21
PABPC1-207ENST00000518716 ZRANB1Q9UGI0 708 aa13.7□□□□□ -0.22
PABPC1-207ENST00000518716 GALR2O43603 387 aaPredicted RBP13.65□□□□□ -0.22
PABPC1-207ENST00000518716 CREBZFQ9NS37 354 aa13.65□□□□□ -0.22
PABPC1-207ENST00000518716 OTUD5Q96G74 571 aa13.63□□□□□ -0.23
PABPC1-207ENST00000518716 POTEB2H3BUK9 544 aa13.6□□□□□ -0.23
PABPC1-207ENST00000518716 PHF12Q96QT6 1004 aa13.51□□□□□ -0.25
PABPC1-207ENST00000518716 STAG3Q9UJ98 1225 aa13.48□□□□□ -0.25
PABPC1-207ENST00000518716 POTEMA6NI47 508 aa13.46□□□□□ -0.25
PABPC1-207ENST00000518716 PELP1Q8IZL8 1130 aaKnown RBP13.46□□□□□ -0.25
PABPC1-207ENST00000518716 RB1CC1Q8TDY2 1594 aa13.45□□□□□ -0.26
PABPC1-207ENST00000518716 PAK3O75914 559 aaPredicted RBP13.4□□□□□ -0.26
PABPC1-207ENST00000518716 POTEGQ6S5H5 508 aa13.4□□□□□ -0.26
PABPC1-207ENST00000518716 MNX1P50219 401 aaPredicted RBP13.38□□□□□ -0.27
PABPC1-207ENST00000518716 CSRNP3Q8WYN3 585 aa13.35□□□□□ -0.27
PABPC1-207ENST00000518716 NACADO15069 1562 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms