RNA–Protein interactions for RNA: ENST00000518371.2

MRPS28-203, Transcript of mitochondrial ribosomal protein S28, humanhuman

TSL 3

Gene MRPS28, Length 783 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPS28-203ENST00000518371 AEBP2Q6ZN18 517 aaPredicted RBP24.33■■□□□ 1.49
MRPS28-203ENST00000518371 CHIC1Q5VXU3 224 aa22.72■■□□□ 1.23
MRPS28-203ENST00000518371 SENP3Q9H4L4 574 aaPredicted RBP20.84■□□□□ 0.93
MRPS28-203ENST00000518371 PHF23Q9BUL5 403 aaPredicted RBP20.52■□□□□ 0.88
MRPS28-203ENST00000518371 FOXD1Q16676 465 aa19.51■□□□□ 0.71
MRPS28-203ENST00000518371 POTEDQ86YR6 584 aa19.1■□□□□ 0.65
MRPS28-203ENST00000518371 MSH5O43196 834 aa18.49■□□□□ 0.55
MRPS28-203ENST00000518371 PIAS4Q8N2W9 510 aaPredicted RBP18.06■□□□□ 0.48
MRPS28-203ENST00000518371 PPP6R1Q9UPN7 881 aa17.79■□□□□ 0.44
MRPS28-203ENST00000518371 PLPPR3Q6T4P5 718 aa17.7■□□□□ 0.42
MRPS28-203ENST00000518371 ADRA2BP18089 450 aa17.69■□□□□ 0.42
MRPS28-203ENST00000518371 MAPK8IP2Q13387 824 aaPredicted RBP16.45■□□□□ 0.22
MRPS28-203ENST00000518371 DMRT2Q9Y5R5 561 aa16.43■□□□□ 0.22
MRPS28-203ENST00000518371 CACNB1Q02641 598 aaPredicted RBP16.25■□□□□ 0.19
MRPS28-203ENST00000518371 SCAF1Q9H7N4 1312 aaKnown RBP16.19■□□□□ 0.18
MRPS28-203ENST00000518371 DCAF8L1A6NGE4 600 aa15.79■□□□□ 0.12
MRPS28-203ENST00000518371 RNF39Q9H2S5 420 aa15.72■□□□□ 0.11
MRPS28-203ENST00000518371 HOXD11P31277 338 aaPredicted RBP15.59■□□□□ 0.09
MRPS28-203ENST00000518371 C1QBPQ07021 282 aaKnown RBP15.47■□□□□ 0.07
MRPS28-203ENST00000518371 PPP4R3CPQ6ZMV5 832 aa15.44■□□□□ 0.06
MRPS28-203ENST00000518371 RNF216Q9NWF9 866 aaPredicted RBP15.31■□□□□ 0.04
MRPS28-203ENST00000518371 CNKSR2Q8WXI2 1034 aa15.29■□□□□ 0.04
MRPS28-203ENST00000518371 DNAJC5BQ9UF47 199 aa15.19■□□□□ 0.02
MRPS28-203ENST00000518371 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.86□□□□□ -0.03
MRPS28-203ENST00000518371 POTEHQ6S545 545 aa14.85□□□□□ -0.03
MRPS28-203ENST00000518371 NCBP3Q53F19 620 aaKnown RBP14.66□□□□□ -0.06
MRPS28-203ENST00000518371 NISCHQ9Y2I1 1504 aa14.54□□□□□ -0.08
MRPS28-203ENST00000518371 DSG3P32926 999 aa14.52□□□□□ -0.09
MRPS28-203ENST00000518371 U3KPZ7 1027 aaPredicted RBP14.47□□□□□ -0.09
MRPS28-203ENST00000518371 CAPN15O75808 1086 aa14.45□□□□□ -0.1
MRPS28-203ENST00000518371 SPINK5Q9NQ38 1064 aaPredicted RBP14.45□□□□□ -0.1
MRPS28-203ENST00000518371 NPM3O75607 178 aaKnown RBP14.44□□□□□ -0.1
MRPS28-203ENST00000518371 KCNA4P22459 653 aa14.11□□□□□ -0.15
MRPS28-203ENST00000518371 TRHP20396 242 aaPredicted RBP14.08□□□□□ -0.16
MRPS28-203ENST00000518371 ABCB7O75027 752 aa14.06□□□□□ -0.16
MRPS28-203ENST00000518371 ZNF219Q9P2Y4 722 aaPredicted RBP14.02□□□□□ -0.17
MRPS28-203ENST00000518371 APLP2Q06481 763 aa13.99□□□□□ -0.17
MRPS28-203ENST00000518371 SLC4A2P04920 1241 aa13.96□□□□□ -0.17
MRPS28-203ENST00000518371 RBM42Q9BTD8 480 aaKnown RBP13.86□□□□□ -0.19
MRPS28-203ENST00000518371 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.85□□□□□ -0.19
MRPS28-203ENST00000518371 HNRNPUL2Q1KMD3 747 aaKnown RBP13.85□□□□□ -0.19
MRPS28-203ENST00000518371 CHRDL2Q6WN34 429 aa13.81□□□□□ -0.2
MRPS28-203ENST00000518371 SAMD1Q6SPF0 538 aaPredicted RBP13.74□□□□□ -0.21
MRPS28-203ENST00000518371 SP7Q8TDD2 431 aaPredicted RBP13.63□□□□□ -0.23
MRPS28-203ENST00000518371 POLA2Q14181 598 aa13.57□□□□□ -0.24
MRPS28-203ENST00000518371 AKT1S1Q96B36 256 aa13.42□□□□□ -0.26
MRPS28-203ENST00000518371 MYCNP04198 464 aaPredicted RBP13.36□□□□□ -0.27
MRPS28-203ENST00000518371 PIP4P2Q8N4L2 257 aa13.35□□□□□ -0.27
MRPS28-203ENST00000518371 REM2Q8IYK8 340 aaPredicted RBP13.3□□□□□ -0.28
MRPS28-203ENST00000518371 HAX1O00165 279 aa13.29□□□□□ -0.28
MRPS28-203ENST00000518371 SLC4A1APQ9BWU0 796 aaKnown RBP13.29□□□□□ -0.28
MRPS28-203ENST00000518371 ZBTB12Q9Y330 459 aaPredicted RBP13.22□□□□□ -0.29
MRPS28-203ENST00000518371 FXR2P51116 673 aaKnown RBP eCLIP13.18□□□□□ -0.3
MRPS28-203ENST00000518371 PITPNM1O00562 1244 aa13.15□□□□□ -0.3
MRPS28-203ENST00000518371 OSCARQ8IYS5 282 aa13.13□□□□□ -0.31
MRPS28-203ENST00000518371 ATF5Q9Y2D1 282 aaPredicted RBP13.12□□□□□ -0.31
MRPS28-203ENST00000518371 EVX2Q03828 476 aa13.08□□□□□ -0.32
MRPS28-203ENST00000518371 FOXD4L1Q9NU39 408 aa13.04□□□□□ -0.32
MRPS28-203ENST00000518371 ZBTB22O15209 634 aa13.02□□□□□ -0.33
MRPS28-203ENST00000518371 CCDC180Q9P1Z9 1646 aa12.84□□□□□ -0.35
MRPS28-203ENST00000518371 PRKAR2AP13861 404 aaKnown RBP12.81□□□□□ -0.36
MRPS28-203ENST00000518371 LHX8Q68G74 356 aa12.79□□□□□ -0.36
MRPS28-203ENST00000518371 SPDYE2BA6NHP3 402 aa12.78□□□□□ -0.36
MRPS28-203ENST00000518371 SPDYE6P0CI01 402 aa12.78□□□□□ -0.36
MRPS28-203ENST00000518371 SPDYE2Q495Y8 402 aa12.78□□□□□ -0.36
MRPS28-203ENST00000518371 C19orf67A6NJJ6 358 aa12.77□□□□□ -0.37
MRPS28-203ENST00000518371 GABBR2O75899 941 aa12.75□□□□□ -0.37
MRPS28-203ENST00000518371 CLEC11AQ9Y240 323 aa12.72□□□□□ -0.37
MRPS28-203ENST00000518371 ABCC9O60706 1549 aa12.71□□□□□ -0.38
MRPS28-203ENST00000518371 SPDYE1Q8NFV5 336 aaPredicted RBP12.7□□□□□ -0.38
MRPS28-203ENST00000518371 FBLN2P98095 1184 aa12.64□□□□□ -0.39
MRPS28-203ENST00000518371 ATXN8OSP0DMR3 200 aa12.62□□□□□ -0.39
MRPS28-203ENST00000518371 CHADLQ6NUI6 762 aa12.54□□□□□ -0.4
MRPS28-203ENST00000518371 CSRNP3Q8WYN3 585 aa12.54□□□□□ -0.4
MRPS28-203ENST00000518371 ZNF692Q9BU19 519 aaPredicted RBP12.54□□□□□ -0.4
MRPS28-203ENST00000518371 SSUH2Q9Y2M2 353 aa12.53□□□□□ -0.4
MRPS28-203ENST00000518371 MKRN4PQ13434 485 aaPredicted RBP12.48□□□□□ -0.41
MRPS28-203ENST00000518371 POTEIP0CG38 1075 aa12.47□□□□□ -0.41
MRPS28-203ENST00000518371 PLSCR2Q9NRY7 297 aa12.47□□□□□ -0.41
MRPS28-203ENST00000518371 EHMT2Q96KQ7 1210 aa12.45□□□□□ -0.42
MRPS28-203ENST00000518371 PRR29P0C7W0 189 aa12.43□□□□□ -0.42
MRPS28-203ENST00000518371 CD44P16070 742 aaKnown RBP12.36□□□□□ -0.43
MRPS28-203ENST00000518371 DCAF8L2P0C7V8 631 aa12.35□□□□□ -0.43
MRPS28-203ENST00000518371 CLCN6P51797 869 aa12.34□□□□□ -0.43
MRPS28-203ENST00000518371 PABPN1Q86U42 306 aaKnown RBP eCLIP12.32□□□□□ -0.44
MRPS28-203ENST00000518371 FARP1Q9Y4F1 1045 aaPredicted RBP12.3□□□□□ -0.44
MRPS28-203ENST00000518371 DCBLD2Q96PD2 775 aa12.27□□□□□ -0.45
MRPS28-203ENST00000518371 RB1CC1Q8TDY2 1594 aa12.16□□□□□ -0.46
MRPS28-203ENST00000518371 NACADO15069 1562 aa12.14□□□□□ -0.47
MRPS28-203ENST00000518371 ZNF579Q8NAF0 562 aaKnown RBP12.14□□□□□ -0.47
MRPS28-203ENST00000518371 OTUD5Q96G74 571 aa12.13□□□□□ -0.47
MRPS28-203ENST00000518371 ZRANB1Q9UGI0 708 aa12.11□□□□□ -0.47
MRPS28-203ENST00000518371 ZCCHC6Q5VYS8 1495 aaKnown RBP12.08□□□□□ -0.48
MRPS28-203ENST00000518371 POTEMA6NI47 508 aa12.06□□□□□ -0.48
MRPS28-203ENST00000518371 POTEB2H3BUK9 544 aa12.05□□□□□ -0.48
MRPS28-203ENST00000518371 MYO15BQ96JP2 1530 aa12.05□□□□□ -0.48
MRPS28-203ENST00000518371 GALR2O43603 387 aaPredicted RBP12.04□□□□□ -0.48
MRPS28-203ENST00000518371 POTEGQ6S5H5 508 aa12.01□□□□□ -0.49
MRPS28-203ENST00000518371 DCAF1Q9Y4B6 1507 aa11.99□□□□□ -0.49
MRPS28-203ENST00000518371 CREBZFQ9NS37 354 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms