RNA–Protein interactions for RNA: ENST00000512275.5

RFC1-213, Transcript of replication factor C subunit 1, humanhuman

TSL 3

Gene RFC1, Length 841 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-213ENST00000512275 AEBP2Q6ZN18 517 aaPredicted RBP29.71■■■□□ 2.35
RFC1-213ENST00000512275 CHIC1Q5VXU3 224 aa28.33■■■□□ 2.13
RFC1-213ENST00000512275 SENP3Q9H4L4 574 aaPredicted RBP25.3■■□□□ 1.64
RFC1-213ENST00000512275 PHF23Q9BUL5 403 aaPredicted RBP25■■□□□ 1.59
RFC1-213ENST00000512275 FOXD1Q16676 465 aa23.58■■□□□ 1.37
RFC1-213ENST00000512275 PLPPR3Q6T4P5 718 aa22.68■■□□□ 1.22
RFC1-213ENST00000512275 POTEDQ86YR6 584 aa22.25■■□□□ 1.15
RFC1-213ENST00000512275 PPP6R1Q9UPN7 881 aa22.15■■□□□ 1.14
RFC1-213ENST00000512275 ADRA2BP18089 450 aa22.09■■□□□ 1.13
RFC1-213ENST00000512275 PIAS4Q8N2W9 510 aaPredicted RBP22.06■■□□□ 1.12
RFC1-213ENST00000512275 MSH5O43196 834 aa22■■□□□ 1.11
RFC1-213ENST00000512275 MAPK8IP2Q13387 824 aaPredicted RBP20.25■□□□□ 0.83
RFC1-213ENST00000512275 SCAF1Q9H7N4 1312 aaKnown RBP20.19■□□□□ 0.82
RFC1-213ENST00000512275 DMRT2Q9Y5R5 561 aa20.09■□□□□ 0.81
RFC1-213ENST00000512275 PPP4R3CPQ6ZMV5 832 aa19.91■□□□□ 0.78
RFC1-213ENST00000512275 CNKSR2Q8WXI2 1034 aa19.49■□□□□ 0.71
RFC1-213ENST00000512275 KCNA4P22459 653 aa19.45■□□□□ 0.7
RFC1-213ENST00000512275 HOXD11P31277 338 aaPredicted RBP19.4■□□□□ 0.7
RFC1-213ENST00000512275 RNF216Q9NWF9 866 aaPredicted RBP19.29■□□□□ 0.68
RFC1-213ENST00000512275 DCAF8L1A6NGE4 600 aa19.26■□□□□ 0.67
RFC1-213ENST00000512275 NCBP3Q53F19 620 aaKnown RBP19.16■□□□□ 0.66
RFC1-213ENST00000512275 CACNB1Q02641 598 aaPredicted RBP19.11■□□□□ 0.65
RFC1-213ENST00000512275 NPM3O75607 178 aaKnown RBP18.9■□□□□ 0.62
RFC1-213ENST00000512275 EHMT2Q96KQ7 1210 aa18.87■□□□□ 0.61
RFC1-213ENST00000512275 RNF39Q9H2S5 420 aa18.8■□□□□ 0.6
RFC1-213ENST00000512275 DNAJC5BQ9UF47 199 aa18.69■□□□□ 0.58
RFC1-213ENST00000512275 SLC4A1APQ9BWU0 796 aaKnown RBP18.62■□□□□ 0.57
RFC1-213ENST00000512275 C1QBPQ07021 282 aaKnown RBP18.52■□□□□ 0.56
RFC1-213ENST00000512275 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.48■□□□□ 0.551e-7■■■■□ 19.9
RFC1-213ENST00000512275 CSRNP3Q8WYN3 585 aa18.41■□□□□ 0.54
RFC1-213ENST00000512275 U3KPZ7 1027 aaPredicted RBP18.12■□□□□ 0.49
RFC1-213ENST00000512275 SLC4A2P04920 1241 aa18.03■□□□□ 0.48
RFC1-213ENST00000512275 ZBTB22O15209 634 aa17.97■□□□□ 0.47
RFC1-213ENST00000512275 SPINK5Q9NQ38 1064 aaPredicted RBP17.82■□□□□ 0.44
RFC1-213ENST00000512275 CAPN15O75808 1086 aa17.77■□□□□ 0.44
RFC1-213ENST00000512275 FOXD4L1Q9NU39 408 aa17.68■□□□□ 0.42
RFC1-213ENST00000512275 DSG3P32926 999 aa17.65■□□□□ 0.42
RFC1-213ENST00000512275 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.63■□□□□ 0.41
RFC1-213ENST00000512275 HNRNPUL2Q1KMD3 747 aaKnown RBP17.63■□□□□ 0.41
RFC1-213ENST00000512275 APLP2Q06481 763 aa17.59■□□□□ 0.41
RFC1-213ENST00000512275 SAMD1Q6SPF0 538 aaPredicted RBP17.55■□□□□ 0.4
RFC1-213ENST00000512275 TRHP20396 242 aaPredicted RBP17.52■□□□□ 0.4
RFC1-213ENST00000512275 ZNF219Q9P2Y4 722 aaPredicted RBP17.48■□□□□ 0.39
RFC1-213ENST00000512275 MYCNP04198 464 aaPredicted RBP17.47■□□□□ 0.39
RFC1-213ENST00000512275 ABCB7O75027 752 aa17.39■□□□□ 0.37
RFC1-213ENST00000512275 POTEHQ6S545 545 aa17.32■□□□□ 0.36
RFC1-213ENST00000512275 POLA2Q14181 598 aa17.09■□□□□ 0.33
RFC1-213ENST00000512275 ATF5Q9Y2D1 282 aaPredicted RBP17.08■□□□□ 0.32
RFC1-213ENST00000512275 ATXN8OSP0DMR3 200 aa17.03■□□□□ 0.32
RFC1-213ENST00000512275 RBM42Q9BTD8 480 aaKnown RBP16.82■□□□□ 0.28
RFC1-213ENST00000512275 ZBTB12Q9Y330 459 aaPredicted RBP16.73■□□□□ 0.27
RFC1-213ENST00000512275 OSCARQ8IYS5 282 aa16.55■□□□□ 0.24
RFC1-213ENST00000512275 FKBP8Q14318 412 aa16.53■□□□□ 0.24
RFC1-213ENST00000512275 AKT1S1Q96B36 256 aa16.46■□□□□ 0.23
RFC1-213ENST00000512275 CHRDL2Q6WN34 429 aa16.43■□□□□ 0.22
RFC1-213ENST00000512275 FBLN2P98095 1184 aa16.38■□□□□ 0.21
RFC1-213ENST00000512275 RTN4Q9NQC3 1192 aaKnown RBP16.34■□□□□ 0.21
RFC1-213ENST00000512275 AMER1Q5JTC6 1135 aaPredicted RBP16.32■□□□□ 0.2
RFC1-213ENST00000512275 REM2Q8IYK8 340 aaPredicted RBP16.32■□□□□ 0.2
RFC1-213ENST00000512275 MKRN4PQ13434 485 aaPredicted RBP16.31■□□□□ 0.2
RFC1-213ENST00000512275 SPDYE2BA6NHP3 402 aa16.24■□□□□ 0.19
RFC1-213ENST00000512275 SPDYE6P0CI01 402 aa16.24■□□□□ 0.19
RFC1-213ENST00000512275 SPDYE2Q495Y8 402 aa16.24■□□□□ 0.19
RFC1-213ENST00000512275 PITPNM1O00562 1244 aa16.15■□□□□ 0.18
RFC1-213ENST00000512275 ZNF692Q9BU19 519 aaPredicted RBP16.06■□□□□ 0.16
RFC1-213ENST00000512275 PIP4P2Q8N4L2 257 aa16.05■□□□□ 0.16
RFC1-213ENST00000512275 SSUH2Q9Y2M2 353 aa16.05■□□□□ 0.16
RFC1-213ENST00000512275 SP7Q8TDD2 431 aaPredicted RBP16.03■□□□□ 0.16
RFC1-213ENST00000512275 FXR2P51116 673 aaKnown RBP eCLIP15.98■□□□□ 0.159e-8■■■□□ 18.9
RFC1-213ENST00000512275 NISCHQ9Y2I1 1504 aa15.97■□□□□ 0.15
RFC1-213ENST00000512275 SPDYE1Q8NFV5 336 aaPredicted RBP15.92■□□□□ 0.14
RFC1-213ENST00000512275 CLEC11AQ9Y240 323 aa15.89■□□□□ 0.13
RFC1-213ENST00000512275 SLC24A1O60721 1099 aa15.88■□□□□ 0.13
RFC1-213ENST00000512275 SPDYE4A6NLX3 237 aa15.85■□□□□ 0.13
RFC1-213ENST00000512275 PABPN1Q86U42 306 aaKnown RBP eCLIP15.84■□□□□ 0.13
RFC1-213ENST00000512275 PROM2Q8N271 834 aa15.82■□□□□ 0.12
RFC1-213ENST00000512275 HAX1O00165 279 aa15.74■□□□□ 0.11
RFC1-213ENST00000512275 FBXO3Q9UK99 471 aa15.74■□□□□ 0.11
RFC1-213ENST00000512275 PRKAR2AP13861 404 aaKnown RBP15.73■□□□□ 0.11
RFC1-213ENST00000512275 EVX2Q03828 476 aa15.68■□□□□ 0.1
RFC1-213ENST00000512275 PRR29P0C7W0 189 aa15.65■□□□□ 0.1
RFC1-213ENST00000512275 CHADLQ6NUI6 762 aa15.58■□□□□ 0.08
RFC1-213ENST00000512275 VASPP50552 380 aaPredicted RBP15.55■□□□□ 0.08
RFC1-213ENST00000512275 C19orf67A6NJJ6 358 aa15.46■□□□□ 0.07
RFC1-213ENST00000512275 IFNLR1Q8IU57 520 aaPredicted RBP15.41■□□□□ 0.06
RFC1-213ENST00000512275 STAG3Q9UJ98 1225 aa15.41■□□□□ 0.06
RFC1-213ENST00000512275 FARP1Q9Y4F1 1045 aaPredicted RBP15.37■□□□□ 0.05
RFC1-213ENST00000512275 CREBZFQ9NS37 354 aa15.3■□□□□ 0.04
RFC1-213ENST00000512275 CD44P16070 742 aaKnown RBP15.24■□□□□ 0.03
RFC1-213ENST00000512275 GABBR2O75899 941 aa15.21■□□□□ 0.03
RFC1-213ENST00000512275 PKD2Q13563 968 aa15.18■□□□□ 0.02
RFC1-213ENST00000512275 PLCB2Q00722 1185 aa15.08■□□□□ 0
RFC1-213ENST00000512275 SPOCK2Q92563 424 aa15.07■□□□□ 0
RFC1-213ENST00000512275 MNX1P50219 401 aaPredicted RBP15.05■□□□□ -0
RFC1-213ENST00000512275 ZRANB1Q9UGI0 708 aa15.04■□□□□ -0
RFC1-213ENST00000512275 LHX8Q68G74 356 aa15.03■□□□□ -0
RFC1-213ENST00000512275 KLHL34Q8N239 644 aa15.01□□□□□ -0.01
RFC1-213ENST00000512275 ZNF579Q8NAF0 562 aaKnown RBP15.01□□□□□ -0.01
RFC1-213ENST00000512275 NPM1P06748 294 aaKnown RBP eCLIP15□□□□□ -0.01
RFC1-213ENST00000512275 CLCN6P51797 869 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 465.7 ms