RNA–Protein interactions for RNA: ENST00000510806.1

SH3RF1-204, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 4

Gene SH3RF1, Length 591 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-204ENST00000510806 AEBP2Q6ZN18 517 aaPredicted RBP23.57■■□□□ 1.36
SH3RF1-204ENST00000510806 CHIC1Q5VXU3 224 aa22.28■■□□□ 1.16
SH3RF1-204ENST00000510806 SENP3Q9H4L4 574 aaPredicted RBP19.98■□□□□ 0.79
SH3RF1-204ENST00000510806 PHF23Q9BUL5 403 aaPredicted RBP19.75■□□□□ 0.75
SH3RF1-204ENST00000510806 FOXD1Q16676 465 aa18.71■□□□□ 0.59
SH3RF1-204ENST00000510806 PLPPR3Q6T4P5 718 aa17.73■□□□□ 0.43
SH3RF1-204ENST00000510806 PPP6R1Q9UPN7 881 aa17.5■□□□□ 0.39
SH3RF1-204ENST00000510806 MSH5O43196 834 aa17.42■□□□□ 0.38
SH3RF1-204ENST00000510806 PIAS4Q8N2W9 510 aaPredicted RBP17.42■□□□□ 0.38
SH3RF1-204ENST00000510806 ADRA2BP18089 450 aa17.41■□□□□ 0.38
SH3RF1-204ENST00000510806 POTEDQ86YR6 584 aa17.14■□□□□ 0.33
SH3RF1-204ENST00000510806 MAPK8IP2Q13387 824 aaPredicted RBP16.02■□□□□ 0.16
SH3RF1-204ENST00000510806 DMRT2Q9Y5R5 561 aa15.88■□□□□ 0.13
SH3RF1-204ENST00000510806 SCAF1Q9H7N4 1312 aaKnown RBP15.78■□□□□ 0.12
SH3RF1-204ENST00000510806 NISCHQ9Y2I1 1504 aa15.58■□□□□ 0.08
SH3RF1-204ENST00000510806 PPP4R3CPQ6ZMV5 832 aa15.57■□□□□ 0.08
SH3RF1-204ENST00000510806 HOXD11P31277 338 aaPredicted RBP15.29■□□□□ 0.04
SH3RF1-204ENST00000510806 CNKSR2Q8WXI2 1034 aa15.25■□□□□ 0.03
SH3RF1-204ENST00000510806 DCAF8L1A6NGE4 600 aa15.15■□□□□ 0.02
SH3RF1-204ENST00000510806 RNF216Q9NWF9 866 aaPredicted RBP15.14■□□□□ 0.01
SH3RF1-204ENST00000510806 CACNB1Q02641 598 aaPredicted RBP14.96□□□□□ -0.01
SH3RF1-204ENST00000510806 RNF39Q9H2S5 420 aa14.93□□□□□ -0.02
SH3RF1-204ENST00000510806 NCBP3Q53F19 620 aaKnown RBP14.87□□□□□ -0.03
SH3RF1-204ENST00000510806 NPM3O75607 178 aaKnown RBP14.78□□□□□ -0.04
SH3RF1-204ENST00000510806 DNAJC5BQ9UF47 199 aa14.72□□□□□ -0.05
SH3RF1-204ENST00000510806 C1QBPQ07021 282 aaKnown RBP14.65□□□□□ -0.06
SH3RF1-204ENST00000510806 KCNA4P22459 653 aa14.49□□□□□ -0.09
SH3RF1-204ENST00000510806 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.49□□□□□ -0.09
SH3RF1-204ENST00000510806 U3KPZ7 1027 aaPredicted RBP14.29□□□□□ -0.12
SH3RF1-204ENST00000510806 SLC4A2P04920 1241 aa14.16□□□□□ -0.14
SH3RF1-204ENST00000510806 SPINK5Q9NQ38 1064 aaPredicted RBP14.09□□□□□ -0.15
SH3RF1-204ENST00000510806 CAPN15O75808 1086 aa13.98□□□□□ -0.17
SH3RF1-204ENST00000510806 DSG3P32926 999 aa13.97□□□□□ -0.17
SH3RF1-204ENST00000510806 CCDC180Q9P1Z9 1646 aa13.94□□□□□ -0.18
SH3RF1-204ENST00000510806 ABCC9O60706 1549 aa13.9□□□□□ -0.18
SH3RF1-204ENST00000510806 TRHP20396 242 aaPredicted RBP13.76□□□□□ -0.21
SH3RF1-204ENST00000510806 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.72□□□□□ -0.21
SH3RF1-204ENST00000510806 HNRNPUL2Q1KMD3 747 aaKnown RBP13.72□□□□□ -0.21
SH3RF1-204ENST00000510806 ABCB7O75027 752 aa13.71□□□□□ -0.21
SH3RF1-204ENST00000510806 APLP2Q06481 763 aa13.71□□□□□ -0.21
SH3RF1-204ENST00000510806 ZNF219Q9P2Y4 722 aaPredicted RBP13.71□□□□□ -0.21
SH3RF1-204ENST00000510806 SAMD1Q6SPF0 538 aaPredicted RBP13.68□□□□□ -0.22
SH3RF1-204ENST00000510806 MYCNP04198 464 aaPredicted RBP13.61□□□□□ -0.23
SH3RF1-204ENST00000510806 SLC4A1APQ9BWU0 796 aaKnown RBP13.61□□□□□ -0.23
SH3RF1-204ENST00000510806 FOXD4L1Q9NU39 408 aa13.47□□□□□ -0.25
SH3RF1-204ENST00000510806 ATF5Q9Y2D1 282 aaPredicted RBP13.41□□□□□ -0.26
SH3RF1-204ENST00000510806 POLA2Q14181 598 aa13.4□□□□□ -0.26
SH3RF1-204ENST00000510806 POTEHQ6S545 545 aa13.39□□□□□ -0.27
SH3RF1-204ENST00000510806 ZBTB22O15209 634 aa13.38□□□□□ -0.27
SH3RF1-204ENST00000510806 RB1CC1Q8TDY2 1594 aa13.26□□□□□ -0.29
SH3RF1-204ENST00000510806 RBM42Q9BTD8 480 aaKnown RBP13.23□□□□□ -0.29
SH3RF1-204ENST00000510806 NACADO15069 1562 aa13.2□□□□□ -0.3
SH3RF1-204ENST00000510806 MYO15BQ96JP2 1530 aa13.09□□□□□ -0.31
SH3RF1-204ENST00000510806 DCAF8L2P0C7V8 631 aa13.05□□□□□ -0.32
SH3RF1-204ENST00000510806 ZBTB12Q9Y330 459 aaPredicted RBP13.05□□□□□ -0.32
SH3RF1-204ENST00000510806 ATXN8OSP0DMR3 200 aa13.03□□□□□ -0.32
SH3RF1-204ENST00000510806 CHRDL2Q6WN34 429 aa13.02□□□□□ -0.33
SH3RF1-204ENST00000510806 OSCARQ8IYS5 282 aa13.01□□□□□ -0.33
SH3RF1-204ENST00000510806 PABPN1Q86U42 306 aaKnown RBP eCLIP12.96□□□□□ -0.33
SH3RF1-204ENST00000510806 AKT1S1Q96B36 256 aa12.96□□□□□ -0.33
SH3RF1-204ENST00000510806 UNC13AQ9UPW8 1703 aa12.96□□□□□ -0.34
SH3RF1-204ENST00000510806 BICRAQ9NZM4 1560 aa12.92□□□□□ -0.34
SH3RF1-204ENST00000510806 DCAF1Q9Y4B6 1507 aa12.91□□□□□ -0.34
SH3RF1-204ENST00000510806 ZCCHC6Q5VYS8 1495 aaKnown RBP12.9□□□□□ -0.34
SH3RF1-204ENST00000510806 REM2Q8IYK8 340 aaPredicted RBP12.87□□□□□ -0.35
SH3RF1-204ENST00000510806 MKRN4PQ13434 485 aaPredicted RBP12.79□□□□□ -0.36
SH3RF1-204ENST00000510806 PITPNM1O00562 1244 aa12.76□□□□□ -0.37
SH3RF1-204ENST00000510806 SHROOM4Q9ULL8 1493 aa12.76□□□□□ -0.37
SH3RF1-204ENST00000510806 PIP4P2Q8N4L2 257 aa12.73□□□□□ -0.37
SH3RF1-204ENST00000510806 FBLN2P98095 1184 aa12.72□□□□□ -0.37
SH3RF1-204ENST00000510806 SPDYE2BA6NHP3 402 aa12.69□□□□□ -0.38
SH3RF1-204ENST00000510806 SPDYE6P0CI01 402 aa12.69□□□□□ -0.38
SH3RF1-204ENST00000510806 SPDYE2Q495Y8 402 aa12.69□□□□□ -0.38
SH3RF1-204ENST00000510806 CSRNP3Q8WYN3 585 aa12.68□□□□□ -0.38
SH3RF1-204ENST00000510806 SCRIBQ14160 1630 aa12.64□□□□□ -0.39
SH3RF1-204ENST00000510806 FXR2P51116 673 aaKnown RBP eCLIP12.64□□□□□ -0.39
SH3RF1-204ENST00000510806 SSUH2Q9Y2M2 353 aa12.59□□□□□ -0.39
SH3RF1-204ENST00000510806 CC2D2AQ9P2K1 1620 aa12.58□□□□□ -0.4
SH3RF1-204ENST00000510806 EIF4G1Q04637 1599 aaKnown RBP12.56□□□□□ -0.4
SH3RF1-204ENST00000510806 CECR2Q9BXF3 1484 aa12.54□□□□□ -0.4
SH3RF1-204ENST00000510806 SP7Q8TDD2 431 aaPredicted RBP12.53□□□□□ -0.4
SH3RF1-204ENST00000510806 ZNF692Q9BU19 519 aaPredicted RBP12.53□□□□□ -0.4
SH3RF1-204ENST00000510806 SPDYE1Q8NFV5 336 aaPredicted RBP12.46□□□□□ -0.41
SH3RF1-204ENST00000510806 EHMT2Q96KQ7 1210 aa12.46□□□□□ -0.41
SH3RF1-204ENST00000510806 CLEC11AQ9Y240 323 aa12.45□□□□□ -0.42
SH3RF1-204ENST00000510806 HAX1O00165 279 aa12.44□□□□□ -0.42
SH3RF1-204ENST00000510806 EVX2Q03828 476 aa12.41□□□□□ -0.42
SH3RF1-204ENST00000510806 PRKAR2AP13861 404 aaKnown RBP12.39□□□□□ -0.43
SH3RF1-204ENST00000510806 CHADLQ6NUI6 762 aa12.29□□□□□ -0.44
SH3RF1-204ENST00000510806 C19orf67A6NJJ6 358 aa12.24□□□□□ -0.45
SH3RF1-204ENST00000510806 NCAPD3P42695 1498 aa12.23□□□□□ -0.45
SH3RF1-204ENST00000510806 PRR29P0C7W0 189 aa12.22□□□□□ -0.45
SH3RF1-204ENST00000510806 ATAD2BQ9ULI0 1458 aa12.15□□□□□ -0.46
SH3RF1-204ENST00000510806 SMARCA4P51532 1647 aa12.11□□□□□ -0.47
SH3RF1-204ENST00000510806 SMARCA2P51531 1590 aa12.1□□□□□ -0.47
SH3RF1-204ENST00000510806 HMGXB3Q12766 1538 aa12.09□□□□□ -0.47
SH3RF1-204ENST00000510806 SPDYE4A6NLX3 237 aa12.08□□□□□ -0.48
SH3RF1-204ENST00000510806 BAZ1AQ9NRL2 1556 aaPredicted RBP12.07□□□□□ -0.48
SH3RF1-204ENST00000510806 FARP1Q9Y4F1 1045 aaPredicted RBP12.07□□□□□ -0.48
SH3RF1-204ENST00000510806 DNAJC5Q9H3Z4 198 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms