RNA–Protein interactions for RNA: ENST00000493864.1

TRA2B-216, Transcript of transformer 2 beta homolog, humanhuman

TSL 2

Gene TRA2B, Length 567 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2B-216ENST00000493864 AEBP2Q6ZN18 517 aaPredicted RBP23.93■■□□□ 1.42
TRA2B-216ENST00000493864 CHIC1Q5VXU3 224 aa23.54■■□□□ 1.36
TRA2B-216ENST00000493864 PHF23Q9BUL5 403 aaPredicted RBP20.73■□□□□ 0.91
TRA2B-216ENST00000493864 SENP3Q9H4L4 574 aaPredicted RBP20.26■□□□□ 0.83
TRA2B-216ENST00000493864 PLPPR3Q6T4P5 718 aa19.21■□□□□ 0.67
TRA2B-216ENST00000493864 FOXD1Q16676 465 aa18.8■□□□□ 0.6
TRA2B-216ENST00000493864 ADRA2BP18089 450 aa18.26■□□□□ 0.51
TRA2B-216ENST00000493864 PPP6R1Q9UPN7 881 aa18.25■□□□□ 0.51
TRA2B-216ENST00000493864 PIAS4Q8N2W9 510 aaPredicted RBP17.8■□□□□ 0.44
TRA2B-216ENST00000493864 MSH5O43196 834 aa17.24■□□□□ 0.35
TRA2B-216ENST00000493864 PPP4R3CPQ6ZMV5 832 aa16.97■□□□□ 0.31
TRA2B-216ENST00000493864 KCNA4P22459 653 aa16.8■□□□□ 0.28
TRA2B-216ENST00000493864 SCAF1Q9H7N4 1312 aaKnown RBP16.69■□□□□ 0.26
TRA2B-216ENST00000493864 NCBP3Q53F19 620 aaKnown RBP16.57■□□□□ 0.24
TRA2B-216ENST00000493864 MAPK8IP2Q13387 824 aaPredicted RBP16.52■□□□□ 0.24
TRA2B-216ENST00000493864 CNKSR2Q8WXI2 1034 aa16.43■□□□□ 0.22
TRA2B-216ENST00000493864 NPM3O75607 178 aaKnown RBP16.33■□□□□ 0.2
TRA2B-216ENST00000493864 DMRT2Q9Y5R5 561 aa16.2■□□□□ 0.18
TRA2B-216ENST00000493864 RNF216Q9NWF9 866 aaPredicted RBP16.06■□□□□ 0.16
TRA2B-216ENST00000493864 SLC4A1APQ9BWU0 796 aaKnown RBP16.04■□□□□ 0.16
TRA2B-216ENST00000493864 HOXD11P31277 338 aaPredicted RBP15.93■□□□□ 0.14
TRA2B-216ENST00000493864 EHMT2Q96KQ7 1210 aa15.85■□□□□ 0.13
TRA2B-216ENST00000493864 DNAJC5BQ9UF47 199 aa15.74■□□□□ 0.11
TRA2B-216ENST00000493864 DCAF8L1A6NGE4 600 aa15.57■□□□□ 0.08
TRA2B-216ENST00000493864 CSRNP3Q8WYN3 585 aa15.52■□□□□ 0.08
TRA2B-216ENST00000493864 ZBTB22O15209 634 aa15.46■□□□□ 0.07
TRA2B-216ENST00000493864 FOXD4L1Q9NU39 408 aa15.39■□□□□ 0.05
TRA2B-216ENST00000493864 POTEDQ86YR6 584 aa15.38■□□□□ 0.05
TRA2B-216ENST00000493864 SLC4A2P04920 1241 aa15.37■□□□□ 0.05
TRA2B-216ENST00000493864 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.24■□□□□ 0.032e-9■□□□□ 8.6
TRA2B-216ENST00000493864 NISCHQ9Y2I1 1504 aa15.14■□□□□ 0.01
TRA2B-216ENST00000493864 MYCNP04198 464 aaPredicted RBP15.08■□□□□ 0
TRA2B-216ENST00000493864 U3KPZ7 1027 aaPredicted RBP14.99□□□□□ -0.01
TRA2B-216ENST00000493864 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.85□□□□□ -0.03
TRA2B-216ENST00000493864 HNRNPUL2Q1KMD3 747 aaKnown RBP14.85□□□□□ -0.03
TRA2B-216ENST00000493864 ATXN8OSP0DMR3 200 aa14.81□□□□□ -0.04
TRA2B-216ENST00000493864 SAMD1Q6SPF0 538 aaPredicted RBP14.81□□□□□ -0.04
TRA2B-216ENST00000493864 RNF39Q9H2S5 420 aa14.79□□□□□ -0.04
TRA2B-216ENST00000493864 ATF5Q9Y2D1 282 aaPredicted RBP14.69□□□□□ -0.06
TRA2B-216ENST00000493864 APLP2Q06481 763 aa14.65□□□□□ -0.06
TRA2B-216ENST00000493864 C1QBPQ07021 282 aaKnown RBP14.62□□□□□ -0.07
TRA2B-216ENST00000493864 SPINK5Q9NQ38 1064 aaPredicted RBP14.53□□□□□ -0.08
TRA2B-216ENST00000493864 CAPN15O75808 1086 aa14.48□□□□□ -0.09
TRA2B-216ENST00000493864 TRHP20396 242 aaPredicted RBP14.47□□□□□ -0.09
TRA2B-216ENST00000493864 ZNF219Q9P2Y4 722 aaPredicted RBP14.44□□□□□ -0.1
TRA2B-216ENST00000493864 CACNB1Q02641 598 aaPredicted RBP14.31□□□□□ -0.12
TRA2B-216ENST00000493864 POLA2Q14181 598 aa14.26□□□□□ -0.13
TRA2B-216ENST00000493864 ABCB7O75027 752 aa14.23□□□□□ -0.13
TRA2B-216ENST00000493864 DSG3P32926 999 aa14.15□□□□□ -0.14
TRA2B-216ENST00000493864 FBLN2P98095 1184 aa14.05□□□□□ -0.16
TRA2B-216ENST00000493864 FKBP8Q14318 412 aa14.05□□□□□ -0.16
TRA2B-216ENST00000493864 MKRN4PQ13434 485 aaPredicted RBP14.04□□□□□ -0.16
TRA2B-216ENST00000493864 ZBTB12Q9Y330 459 aaPredicted RBP14□□□□□ -0.17
TRA2B-216ENST00000493864 SPDYE4A6NLX3 237 aa13.84□□□□□ -0.19
TRA2B-216ENST00000493864 OSCARQ8IYS5 282 aa13.77□□□□□ -0.21
TRA2B-216ENST00000493864 ZNF692Q9BU19 519 aaPredicted RBP13.65□□□□□ -0.22
TRA2B-216ENST00000493864 SPDYE2BA6NHP3 402 aa13.64□□□□□ -0.23
TRA2B-216ENST00000493864 SPDYE6P0CI01 402 aa13.64□□□□□ -0.23
TRA2B-216ENST00000493864 SPDYE2Q495Y8 402 aa13.64□□□□□ -0.23
TRA2B-216ENST00000493864 PROM2Q8N271 834 aa13.57□□□□□ -0.24
TRA2B-216ENST00000493864 SSUH2Q9Y2M2 353 aa13.55□□□□□ -0.24
TRA2B-216ENST00000493864 PABPN1Q86U42 306 aaKnown RBP eCLIP13.48□□□□□ -0.25
TRA2B-216ENST00000493864 RBM42Q9BTD8 480 aaKnown RBP13.48□□□□□ -0.25
TRA2B-216ENST00000493864 FBXO3Q9UK99 471 aa13.47□□□□□ -0.25
TRA2B-216ENST00000493864 AKT1S1Q96B36 256 aa13.35□□□□□ -0.27
TRA2B-216ENST00000493864 CCDC180Q9P1Z9 1646 aa13.35□□□□□ -0.27
TRA2B-216ENST00000493864 VASPP50552 380 aaPredicted RBP13.29□□□□□ -0.28
TRA2B-216ENST00000493864 STAG3Q9UJ98 1225 aa13.26□□□□□ -0.29
TRA2B-216ENST00000493864 REM2Q8IYK8 340 aaPredicted RBP13.24□□□□□ -0.29
TRA2B-216ENST00000493864 SPDYE1Q8NFV5 336 aaPredicted RBP13.2□□□□□ -0.3
TRA2B-216ENST00000493864 CLEC11AQ9Y240 323 aa13.18□□□□□ -0.3
TRA2B-216ENST00000493864 ABCC9O60706 1549 aa13.14□□□□□ -0.31
TRA2B-216ENST00000493864 PLCD3Q8N3E9 789 aa13.13□□□□□ -0.31
TRA2B-216ENST00000493864 IFNLR1Q8IU57 520 aaPredicted RBP13.12□□□□□ -0.31
TRA2B-216ENST00000493864 MIER1Q8N108 512 aa13.12□□□□□ -0.31
TRA2B-216ENST00000493864 AMER1Q5JTC6 1135 aaPredicted RBP13.11□□□□□ -0.31
TRA2B-216ENST00000493864 RTN4Q9NQC3 1192 aaKnown RBP13.11□□□□□ -0.31
TRA2B-216ENST00000493864 PITPNM1O00562 1244 aa13.09□□□□□ -0.31
TRA2B-216ENST00000493864 PRR29P0C7W0 189 aa13.07□□□□□ -0.32
TRA2B-216ENST00000493864 KLHL34Q8N239 644 aa13.06□□□□□ -0.32
TRA2B-216ENST00000493864 PLEKHG5O94827 1062 aa13.02□□□□□ -0.33
TRA2B-216ENST00000493864 SPOCK2Q92563 424 aa12.94□□□□□ -0.34
TRA2B-216ENST00000493864 CREBZFQ9NS37 354 aa12.92□□□□□ -0.34
TRA2B-216ENST00000493864 ZBTB47Q9UFB7 747 aaPredicted RBP12.92□□□□□ -0.34
TRA2B-216ENST00000493864 CHRDL2Q6WN34 429 aa12.85□□□□□ -0.35
TRA2B-216ENST00000493864 CHADLQ6NUI6 762 aa12.84□□□□□ -0.35
TRA2B-216ENST00000493864 MNX1P50219 401 aaPredicted RBP12.8□□□□□ -0.36
TRA2B-216ENST00000493864 FXR2P51116 673 aaKnown RBP eCLIP12.78□□□□□ -0.36
TRA2B-216ENST00000493864 PRKAR2AP13861 404 aaKnown RBP12.77□□□□□ -0.37
TRA2B-216ENST00000493864 PKD2Q13563 968 aa12.75□□□□□ -0.37
TRA2B-216ENST00000493864 PIP4P2Q8N4L2 257 aa12.74□□□□□ -0.37
TRA2B-216ENST00000493864 CIZ1Q9ULV3 898 aaPredicted RBP12.74□□□□□ -0.37
TRA2B-216ENST00000493864 NPM1P06748 294 aaKnown RBP eCLIP12.72□□□□□ -0.37
TRA2B-216ENST00000493864 NUBP1P53384 320 aa12.72□□□□□ -0.37
TRA2B-216ENST00000493864 FARP1Q9Y4F1 1045 aaPredicted RBP12.71□□□□□ -0.37
TRA2B-216ENST00000493864 ECM2O94769 699 aaPredicted RBP12.66□□□□□ -0.38
TRA2B-216ENST00000493864 DCAF8L2P0C7V8 631 aa12.66□□□□□ -0.38
TRA2B-216ENST00000493864 DCAF8Q5TAQ9 597 aa12.66□□□□□ -0.38
TRA2B-216ENST00000493864 RASEFQ8IZ41 740 aa12.65□□□□□ -0.38
TRA2B-216ENST00000493864 GSE1Q14687 1217 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 104.4 ms