RNA–Protein interactions for RNA: ENST00000492626.5

SNX13-209, Transcript of sorting nexin 13, humanhuman

TSL 2

Gene SNX13, Length 3,956 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-209ENST00000492626 CHIC1Q5VXU3 224 aa10.4□□□□□ -0.75
SNX13-209ENST00000492626 AEBP2Q6ZN18 517 aaPredicted RBP10.11□□□□□ -0.79
SNX13-209ENST00000492626 PHF23Q9BUL5 403 aaPredicted RBP9.05□□□□□ -0.96
SNX13-209ENST00000492626 SENP3Q9H4L4 574 aaPredicted RBP8.74□□□□□ -1.01
SNX13-209ENST00000492626 PLPPR3Q6T4P5 718 aa8.72□□□□□ -1.01
SNX13-209ENST00000492626 ADRA2BP18089 450 aa7.98□□□□□ -1.13
SNX13-209ENST00000492626 EHMT2Q96KQ7 1210 aa7.97□□□□□ -1.13
SNX13-209ENST00000492626 FOXD1Q16676 465 aa7.93□□□□□ -1.14
SNX13-209ENST00000492626 KCNA4P22459 653 aa7.91□□□□□ -1.14
SNX13-209ENST00000492626 PPP6R1Q9UPN7 881 aa7.87□□□□□ -1.15
SNX13-209ENST00000492626 NCBP3Q53F19 620 aaKnown RBP7.76□□□□□ -1.17
SNX13-209ENST00000492626 SLC4A1APQ9BWU0 796 aaKnown RBP7.72□□□□□ -1.17
SNX13-209ENST00000492626 PIAS4Q8N2W9 510 aaPredicted RBP7.71□□□□□ -1.18
SNX13-209ENST00000492626 PPP4R3CPQ6ZMV5 832 aa7.69□□□□□ -1.18
SNX13-209ENST00000492626 CSRNP3Q8WYN3 585 aa7.53□□□□□ -1.2
SNX13-209ENST00000492626 SCAF1Q9H7N4 1312 aaKnown RBP7.52□□□□□ -1.21
SNX13-209ENST00000492626 NPM3O75607 178 aaKnown RBP7.44□□□□□ -1.22
SNX13-209ENST00000492626 CNKSR2Q8WXI2 1034 aa7.41□□□□□ -1.22
SNX13-209ENST00000492626 MSH5O43196 834 aa7.31□□□□□ -1.24
SNX13-209ENST00000492626 FOXD4L1Q9NU39 408 aa7.26□□□□□ -1.25
SNX13-209ENST00000492626 ZBTB22O15209 634 aa7.16□□□□□ -1.26
SNX13-209ENST00000492626 RNF216Q9NWF9 866 aaPredicted RBP7.13□□□□□ -1.27
SNX13-209ENST00000492626 MAPK8IP2Q13387 824 aaPredicted RBP7.08□□□□□ -1.28
SNX13-209ENST00000492626 DNAJC5BQ9UF47 199 aa7.08□□□□□ -1.28
SNX13-209ENST00000492626 AMER1Q5JTC6 1135 aaPredicted RBP7.07□□□□□ -1.28
SNX13-209ENST00000492626 SLC24A1O60721 1099 aa7.03□□□□□ -1.28
SNX13-209ENST00000492626 MYCNP04198 464 aaPredicted RBP6.97□□□□□ -1.29
SNX13-209ENST00000492626 ATXN8OSP0DMR3 200 aa6.96□□□□□ -1.3
SNX13-209ENST00000492626 DMRT2Q9Y5R5 561 aa6.96□□□□□ -1.3
SNX13-209ENST00000492626 HOXD11P31277 338 aaPredicted RBP6.94□□□□□ -1.3
SNX13-209ENST00000492626 FKBP8Q14318 412 aa6.93□□□□□ -1.3
SNX13-209ENST00000492626 RTN4Q9NQC3 1192 aaKnown RBP6.93□□□□□ -1.3
SNX13-209ENST00000492626 NISCHQ9Y2I1 1504 aa6.88□□□□□ -1.31
SNX13-209ENST00000492626 DCAF8L1A6NGE4 600 aa6.86□□□□□ -1.31
SNX13-209ENST00000492626 SLC4A2P04920 1241 aa6.85□□□□□ -1.31
SNX13-209ENST00000492626 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.84□□□□□ -1.31
SNX13-209ENST00000492626 HNRNPUL2Q1KMD3 747 aaKnown RBP6.84□□□□□ -1.31
SNX13-209ENST00000492626 DNAJC5Q9H3Z4 198 aa6.82□□□□□ -1.32
SNX13-209ENST00000492626 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.82□□□□□ -1.32
SNX13-209ENST00000492626 CCDC180Q9P1Z9 1646 aa6.81□□□□□ -1.32
SNX13-209ENST00000492626 SAMD1Q6SPF0 538 aaPredicted RBP6.78□□□□□ -1.32
SNX13-209ENST00000492626 APLP2Q06481 763 aa6.75□□□□□ -1.33
SNX13-209ENST00000492626 SHROOM4Q9ULL8 1493 aa6.73□□□□□ -1.33
SNX13-209ENST00000492626 FBXO3Q9UK99 471 aa6.67□□□□□ -1.34
SNX13-209ENST00000492626 DCAF8L2P0C7V8 631 aa6.59□□□□□ -1.35
SNX13-209ENST00000492626 FBLN2P98095 1184 aa6.57□□□□□ -1.36
SNX13-209ENST00000492626 ZNF219Q9P2Y4 722 aaPredicted RBP6.56□□□□□ -1.36
SNX13-209ENST00000492626 U3KPZ7 1027 aaPredicted RBP6.56□□□□□ -1.36
SNX13-209ENST00000492626 ATF5Q9Y2D1 282 aaPredicted RBP6.55□□□□□ -1.36
SNX13-209ENST00000492626 CUX2O14529 1486 aa6.54□□□□□ -1.36
SNX13-209ENST00000492626 RB1CC1Q8TDY2 1594 aa6.54□□□□□ -1.36
SNX13-209ENST00000492626 SPDYE4A6NLX3 237 aa6.54□□□□□ -1.36
SNX13-209ENST00000492626 ABCC9O60706 1549 aa6.5□□□□□ -1.37
SNX13-209ENST00000492626 HAP1P54257 671 aaPredicted RBP6.46□□□□□ -1.38
SNX13-209ENST00000492626 VASPP50552 380 aaPredicted RBP6.46□□□□□ -1.38
SNX13-209ENST00000492626 TRHP20396 242 aaPredicted RBP6.45□□□□□ -1.38
SNX13-209ENST00000492626 PLCB2Q00722 1185 aa6.44□□□□□ -1.38
SNX13-209ENST00000492626 NACADO15069 1562 aa6.43□□□□□ -1.38
SNX13-209ENST00000492626 KLHL34Q8N239 644 aa6.42□□□□□ -1.38
SNX13-209ENST00000492626 ZBTB12Q9Y330 459 aaPredicted RBP6.42□□□□□ -1.38
SNX13-209ENST00000492626 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.41□□□□□ -1.38
SNX13-209ENST00000492626 MYO15BQ96JP2 1530 aa6.4□□□□□ -1.38
SNX13-209ENST00000492626 CAPN15O75808 1086 aa6.39□□□□□ -1.39
SNX13-209ENST00000492626 BCANQ96GW7 911 aa6.38□□□□□ -1.39
SNX13-209ENST00000492626 POLA2Q14181 598 aa6.36□□□□□ -1.39
SNX13-209ENST00000492626 PLEKHG5O94827 1062 aa6.33□□□□□ -1.4
SNX13-209ENST00000492626 PLCD3Q8N3E9 789 aa6.32□□□□□ -1.4
SNX13-209ENST00000492626 VSIG10Q8N0Z9 540 aa6.31□□□□□ -1.4
SNX13-209ENST00000492626 SPOCK2Q92563 424 aa6.31□□□□□ -1.4
SNX13-209ENST00000492626 MKRN4PQ13434 485 aaPredicted RBP6.31□□□□□ -1.4
SNX13-209ENST00000492626 ECM2O94769 699 aaPredicted RBP6.3□□□□□ -1.4
SNX13-209ENST00000492626 IFNLR1Q8IU57 520 aaPredicted RBP6.3□□□□□ -1.4
SNX13-209ENST00000492626 PROM2Q8N271 834 aa6.29□□□□□ -1.4
SNX13-209ENST00000492626 STAG3Q9UJ98 1225 aa6.29□□□□□ -1.4
SNX13-209ENST00000492626 SPINK5Q9NQ38 1064 aaPredicted RBP6.27□□□□□ -1.41
SNX13-209ENST00000492626 CFAP44Q96MT7 982 aa6.26□□□□□ -1.41
SNX13-209ENST00000492626 BBXQ8WY36 941 aaPredicted RBP6.25□□□□□ -1.41
SNX13-209ENST00000492626 ZNF692Q9BU19 519 aaPredicted RBP6.25□□□□□ -1.41
SNX13-209ENST00000492626 UNC13AQ9UPW8 1703 aa6.25□□□□□ -1.41
SNX13-209ENST00000492626 PAXIP1Q6ZW49 1069 aaPredicted RBP6.24□□□□□ -1.41
SNX13-209ENST00000492626 MIER1Q8N108 512 aa6.24□□□□□ -1.41
SNX13-209ENST00000492626 ZBTB47Q9UFB7 747 aaPredicted RBP6.24□□□□□ -1.41
SNX13-209ENST00000492626 ABCB7O75027 752 aa6.24□□□□□ -1.41
SNX13-209ENST00000492626 C1QBPQ07021 282 aaKnown RBP6.23□□□□□ -1.41
SNX13-209ENST00000492626 PKD2Q13563 968 aa6.22□□□□□ -1.41
SNX13-209ENST00000492626 CIZ1Q9ULV3 898 aaPredicted RBP6.21□□□□□ -1.42
SNX13-209ENST00000492626 SPRYD3Q8NCJ5 442 aa6.21□□□□□ -1.42
SNX13-209ENST00000492626 SPDYE2BA6NHP3 402 aa6.19□□□□□ -1.42
SNX13-209ENST00000492626 SPDYE6P0CI01 402 aa6.19□□□□□ -1.42
SNX13-209ENST00000492626 SPDYE2Q495Y8 402 aa6.19□□□□□ -1.42
SNX13-209ENST00000492626 TAOK2Q9UL54 1235 aa6.18□□□□□ -1.42
SNX13-209ENST00000492626 RNF39Q9H2S5 420 aa6.17□□□□□ -1.42
SNX13-209ENST00000492626 CC2D2AQ9P2K1 1620 aa6.17□□□□□ -1.42
SNX13-209ENST00000492626 CECR2Q9BXF3 1484 aa6.17□□□□□ -1.42
SNX13-209ENST00000492626 NBR1Q14596 966 aa6.17□□□□□ -1.42
SNX13-209ENST00000492626 TRIM41Q8WV44 630 aa6.16□□□□□ -1.42
SNX13-209ENST00000492626 BICRAQ9NZM4 1560 aa6.16□□□□□ -1.42
SNX13-209ENST00000492626 CHGAP10645 457 aaKnown RBP6.15□□□□□ -1.43
SNX13-209ENST00000492626 PABPN1Q86U42 306 aaKnown RBP eCLIP6.15□□□□□ -1.43
SNX13-209ENST00000492626 TPRNQ4KMQ1 711 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms