RNA–Protein interactions for RNA: ENST00000488716.1

NME9-209, Transcript of NME/NM23 family member 9, humanhuman

TSL 3

Gene NME9, Length 688 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME9-209ENST00000488716 CHIC1Q5VXU3 224 aa25.12■■□□□ 1.61
NME9-209ENST00000488716 AEBP2Q6ZN18 517 aaPredicted RBP25.09■■□□□ 1.61
NME9-209ENST00000488716 PHF23Q9BUL5 403 aaPredicted RBP22.13■■□□□ 1.13
NME9-209ENST00000488716 SENP3Q9H4L4 574 aaPredicted RBP21.27■■□□□ 1
NME9-209ENST00000488716 PLPPR3Q6T4P5 718 aa20.71■□□□□ 0.91
NME9-209ENST00000488716 FOXD1Q16676 465 aa19.63■□□□□ 0.73
NME9-209ENST00000488716 ADRA2BP18089 450 aa19.4■□□□□ 0.7
NME9-209ENST00000488716 PPP6R1Q9UPN7 881 aa19.34■□□□□ 0.69
NME9-209ENST00000488716 PIAS4Q8N2W9 510 aaPredicted RBP18.72■□□□□ 0.59
NME9-209ENST00000488716 KCNA4P22459 653 aa18.54■□□□□ 0.56
NME9-209ENST00000488716 NISCHQ9Y2I1 1504 aa18.33■□□□□ 0.52
NME9-209ENST00000488716 PPP4R3CPQ6ZMV5 832 aa18.32■□□□□ 0.52
NME9-209ENST00000488716 NCBP3Q53F19 620 aaKnown RBP18.06■□□□□ 0.48
NME9-209ENST00000488716 EHMT2Q96KQ7 1210 aa18■□□□□ 0.47
NME9-209ENST00000488716 MSH5O43196 834 aa17.92■□□□□ 0.46
NME9-209ENST00000488716 SCAF1Q9H7N4 1312 aaKnown RBP17.81■□□□□ 0.44
NME9-209ENST00000488716 SLC4A1APQ9BWU0 796 aaKnown RBP17.81■□□□□ 0.44
NME9-209ENST00000488716 NPM3O75607 178 aaKnown RBP17.72■□□□□ 0.43
NME9-209ENST00000488716 CNKSR2Q8WXI2 1034 aa17.68■□□□□ 0.42
NME9-209ENST00000488716 CSRNP3Q8WYN3 585 aa17.44■□□□□ 0.38
NME9-209ENST00000488716 MAPK8IP2Q13387 824 aaPredicted RBP17.41■□□□□ 0.38
NME9-209ENST00000488716 RNF216Q9NWF9 866 aaPredicted RBP17.16■□□□□ 0.34
NME9-209ENST00000488716 DMRT2Q9Y5R5 561 aa17.04■□□□□ 0.32
NME9-209ENST00000488716 DNAJC5BQ9UF47 199 aa17.03■□□□□ 0.32
NME9-209ENST00000488716 ZBTB22O15209 634 aa17.02■□□□□ 0.32
NME9-209ENST00000488716 FOXD4L1Q9NU39 408 aa16.92■□□□□ 0.3
NME9-209ENST00000488716 HOXD11P31277 338 aaPredicted RBP16.91■□□□□ 0.3
NME9-209ENST00000488716 SLC4A2P04920 1241 aa16.55■□□□□ 0.24
NME9-209ENST00000488716 DCAF8L1A6NGE4 600 aa16.4■□□□□ 0.22
NME9-209ENST00000488716 MYCNP04198 464 aaPredicted RBP16.4■□□□□ 0.22
NME9-209ENST00000488716 ATXN8OSP0DMR3 200 aa16.27■□□□□ 0.2
NME9-209ENST00000488716 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.22■□□□□ 0.19
NME9-209ENST00000488716 CCDC180Q9P1Z9 1646 aa16.08■□□□□ 0.17
NME9-209ENST00000488716 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.01■□□□□ 0.15
NME9-209ENST00000488716 HNRNPUL2Q1KMD3 747 aaKnown RBP16.01■□□□□ 0.15
NME9-209ENST00000488716 SAMD1Q6SPF0 538 aaPredicted RBP15.96■□□□□ 0.15
NME9-209ENST00000488716 U3KPZ7 1027 aaPredicted RBP15.93■□□□□ 0.14
NME9-209ENST00000488716 ATF5Q9Y2D1 282 aaPredicted RBP15.86■□□□□ 0.13
NME9-209ENST00000488716 FKBP8Q14318 412 aa15.8■□□□□ 0.12
NME9-209ENST00000488716 APLP2Q06481 763 aa15.74■□□□□ 0.11
NME9-209ENST00000488716 ZNF219Q9P2Y4 722 aaPredicted RBP15.59■□□□□ 0.09
NME9-209ENST00000488716 AMER1Q5JTC6 1135 aaPredicted RBP15.45■□□□□ 0.06
NME9-209ENST00000488716 ZCCHC6Q5VYS8 1495 aaKnown RBP15.41■□□□□ 0.06
NME9-209ENST00000488716 TRHP20396 242 aaPredicted RBP15.38■□□□□ 0.05
NME9-209ENST00000488716 RTN4Q9NQC3 1192 aaKnown RBP15.37■□□□□ 0.05
NME9-209ENST00000488716 RNF39Q9H2S5 420 aa15.36■□□□□ 0.05
NME9-209ENST00000488716 SPINK5Q9NQ38 1064 aaPredicted RBP15.33■□□□□ 0.04
NME9-209ENST00000488716 CAPN15O75808 1086 aa15.32■□□□□ 0.04
NME9-209ENST00000488716 DCAF1Q9Y4B6 1507 aa15.27■□□□□ 0.03
NME9-209ENST00000488716 FBLN2P98095 1184 aa15.26■□□□□ 0.03
NME9-209ENST00000488716 C1QBPQ07021 282 aaKnown RBP15.25■□□□□ 0.03
NME9-209ENST00000488716 POTEDQ86YR6 584 aa15.24■□□□□ 0.03
NME9-209ENST00000488716 POLA2Q14181 598 aa15.23■□□□□ 0.03
NME9-209ENST00000488716 SPDYE4A6NLX3 237 aa15.21■□□□□ 0.03
NME9-209ENST00000488716 MKRN4PQ13434 485 aaPredicted RBP15.19■□□□□ 0.02
NME9-209ENST00000488716 MYO15BQ96JP2 1530 aa15.16■□□□□ 0.02
NME9-209ENST00000488716 ABCC9O60706 1549 aa15.15■□□□□ 0.02
NME9-209ENST00000488716 FBXO3Q9UK99 471 aa15.1■□□□□ 0.01
NME9-209ENST00000488716 ABCB7O75027 752 aa15.05■□□□□ -0
NME9-209ENST00000488716 ZBTB12Q9Y330 459 aaPredicted RBP15.05■□□□□ -0
NME9-209ENST00000488716 NACADO15069 1562 aa15□□□□□ -0.01
NME9-209ENST00000488716 PROM2Q8N271 834 aa14.94□□□□□ -0.02
NME9-209ENST00000488716 DCAF8L2P0C7V8 631 aa14.9□□□□□ -0.02
NME9-209ENST00000488716 SLC24A1O60721 1099 aa14.89□□□□□ -0.03
NME9-209ENST00000488716 RB1CC1Q8TDY2 1594 aa14.86□□□□□ -0.03
NME9-209ENST00000488716 DSG3P32926 999 aa14.84□□□□□ -0.03
NME9-209ENST00000488716 VASPP50552 380 aaPredicted RBP14.83□□□□□ -0.04
NME9-209ENST00000488716 ZNF692Q9BU19 519 aaPredicted RBP14.74□□□□□ -0.05
NME9-209ENST00000488716 OSCARQ8IYS5 282 aa14.68□□□□□ -0.06
NME9-209ENST00000488716 SPDYE2BA6NHP3 402 aa14.67□□□□□ -0.06
NME9-209ENST00000488716 SPDYE6P0CI01 402 aa14.67□□□□□ -0.06
NME9-209ENST00000488716 SPDYE2Q495Y8 402 aa14.67□□□□□ -0.06
NME9-209ENST00000488716 IFNLR1Q8IU57 520 aaPredicted RBP14.65□□□□□ -0.06
NME9-209ENST00000488716 SHROOM4Q9ULL8 1493 aa14.64□□□□□ -0.07
NME9-209ENST00000488716 SCRIBQ14160 1630 aa14.63□□□□□ -0.07
NME9-209ENST00000488716 CACNB1Q02641 598 aaPredicted RBP14.62□□□□□ -0.07
NME9-209ENST00000488716 STAG3Q9UJ98 1225 aa14.56□□□□□ -0.08
NME9-209ENST00000488716 SSUH2Q9Y2M2 353 aa14.56□□□□□ -0.08
NME9-209ENST00000488716 PABPN1Q86U42 306 aaKnown RBP eCLIP14.54□□□□□ -0.08
NME9-209ENST00000488716 KLHL34Q8N239 644 aa14.53□□□□□ -0.08
NME9-209ENST00000488716 UNC13AQ9UPW8 1703 aa14.47□□□□□ -0.09
NME9-209ENST00000488716 PLCD3Q8N3E9 789 aa14.47□□□□□ -0.09
NME9-209ENST00000488716 SPOCK2Q92563 424 aa14.44□□□□□ -0.1
NME9-209ENST00000488716 BICRAQ9NZM4 1560 aa14.42□□□□□ -0.1
NME9-209ENST00000488716 MIER1Q8N108 512 aa14.41□□□□□ -0.1
NME9-209ENST00000488716 PKD2Q13563 968 aa14.37□□□□□ -0.11
NME9-209ENST00000488716 PLEKHG5O94827 1062 aa14.34□□□□□ -0.11
NME9-209ENST00000488716 ECM2O94769 699 aaPredicted RBP14.27□□□□□ -0.13
NME9-209ENST00000488716 ZBTB47Q9UFB7 747 aaPredicted RBP14.25□□□□□ -0.13
NME9-209ENST00000488716 PLCB2Q00722 1185 aa14.24□□□□□ -0.13
NME9-209ENST00000488716 CECR2Q9BXF3 1484 aa14.18□□□□□ -0.14
NME9-209ENST00000488716 RBM42Q9BTD8 480 aaKnown RBP14.18□□□□□ -0.14
NME9-209ENST00000488716 BAZ1AQ9NRL2 1556 aaPredicted RBP14.17□□□□□ -0.14
NME9-209ENST00000488716 CIZ1Q9ULV3 898 aaPredicted RBP14.15□□□□□ -0.14
NME9-209ENST00000488716 RSF1Q96T23 1441 aaPredicted RBP14.15□□□□□ -0.14
NME9-209ENST00000488716 HAP1P54257 671 aaPredicted RBP14.11□□□□□ -0.15
NME9-209ENST00000488716 MROH2BQ7Z745 1585 aa14.11□□□□□ -0.15
NME9-209ENST00000488716 SPDYE1Q8NFV5 336 aaPredicted RBP14.11□□□□□ -0.15
NME9-209ENST00000488716 AKT1S1Q96B36 256 aa14.11□□□□□ -0.15
NME9-209ENST00000488716 SMARCA4P51532 1647 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 95 ms