RNA–Protein interactions for RNA: ENST00000488386.5

CDHR3-213, Transcript of cadherin related family member 3, humanhuman

TSL 3

Gene CDHR3, Length 540 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDHR3-213ENST00000488386 AEBP2Q6ZN18 517 aaPredicted RBP22.21■■□□□ 1.15
CDHR3-213ENST00000488386 CHIC1Q5VXU3 224 aa21.63■■□□□ 1.05
CDHR3-213ENST00000488386 PHF23Q9BUL5 403 aaPredicted RBP19.1■□□□□ 0.65
CDHR3-213ENST00000488386 SENP3Q9H4L4 574 aaPredicted RBP18.71■□□□□ 0.59
CDHR3-213ENST00000488386 PLPPR3Q6T4P5 718 aa17.52■□□□□ 0.4
CDHR3-213ENST00000488386 FOXD1Q16676 465 aa17.44■□□□□ 0.38
CDHR3-213ENST00000488386 PPP6R1Q9UPN7 881 aa16.84■□□□□ 0.29
CDHR3-213ENST00000488386 ADRA2BP18089 450 aa16.81■□□□□ 0.28
CDHR3-213ENST00000488386 PIAS4Q8N2W9 510 aaPredicted RBP16.42■□□□□ 0.22
CDHR3-213ENST00000488386 MSH5O43196 834 aa15.97■□□□□ 0.15
CDHR3-213ENST00000488386 PPP4R3CPQ6ZMV5 832 aa15.49■□□□□ 0.07
CDHR3-213ENST00000488386 MAPK8IP2Q13387 824 aaPredicted RBP15.26■□□□□ 0.03
CDHR3-213ENST00000488386 KCNA4P22459 653 aa15.21■□□□□ 0.03
CDHR3-213ENST00000488386 SCAF1Q9H7N4 1312 aaKnown RBP15.2■□□□□ 0.02
CDHR3-213ENST00000488386 CNKSR2Q8WXI2 1034 aa15.01□□□□□ -0.01
CDHR3-213ENST00000488386 NCBP3Q53F19 620 aaKnown RBP14.99□□□□□ -0.01
CDHR3-213ENST00000488386 DMRT2Q9Y5R5 561 aa14.98□□□□□ -0.01
CDHR3-213ENST00000488386 NPM3O75607 178 aaKnown RBP14.9□□□□□ -0.02
CDHR3-213ENST00000488386 RNF216Q9NWF9 866 aaPredicted RBP14.71□□□□□ -0.05
CDHR3-213ENST00000488386 HOXD11P31277 338 aaPredicted RBP14.67□□□□□ -0.06
CDHR3-213ENST00000488386 POTEDQ86YR6 584 aa14.6□□□□□ -0.07
CDHR3-213ENST00000488386 NISCHQ9Y2I1 1504 aa14.55□□□□□ -0.08
CDHR3-213ENST00000488386 SLC4A1APQ9BWU0 796 aaKnown RBP14.43□□□□□ -0.1
CDHR3-213ENST00000488386 DNAJC5BQ9UF47 199 aa14.39□□□□□ -0.11
CDHR3-213ENST00000488386 DCAF8L1A6NGE4 600 aa14.31□□□□□ -0.12
CDHR3-213ENST00000488386 EHMT2Q96KQ7 1210 aa14.1□□□□□ -0.15
CDHR3-213ENST00000488386 SLC4A2P04920 1241 aa14.09□□□□□ -0.15
CDHR3-213ENST00000488386 ZBTB22O15209 634 aa14.06□□□□□ -0.16
CDHR3-213ENST00000488386 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.95□□□□□ -0.182e-8■□□□□ 11
CDHR3-213ENST00000488386 CSRNP3Q8WYN3 585 aa13.93□□□□□ -0.18
CDHR3-213ENST00000488386 FOXD4L1Q9NU39 408 aa13.93□□□□□ -0.18
CDHR3-213ENST00000488386 U3KPZ7 1027 aaPredicted RBP13.8□□□□□ -0.2
CDHR3-213ENST00000488386 RNF39Q9H2S5 420 aa13.75□□□□□ -0.21
CDHR3-213ENST00000488386 MYCNP04198 464 aaPredicted RBP13.71□□□□□ -0.21
CDHR3-213ENST00000488386 C1QBPQ07021 282 aaKnown RBP13.53□□□□□ -0.24
CDHR3-213ENST00000488386 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.48□□□□□ -0.25
CDHR3-213ENST00000488386 HNRNPUL2Q1KMD3 747 aaKnown RBP13.48□□□□□ -0.25
CDHR3-213ENST00000488386 SAMD1Q6SPF0 538 aaPredicted RBP13.48□□□□□ -0.25
CDHR3-213ENST00000488386 ATF5Q9Y2D1 282 aaPredicted RBP13.45□□□□□ -0.26
CDHR3-213ENST00000488386 SPINK5Q9NQ38 1064 aaPredicted RBP13.43□□□□□ -0.26
CDHR3-213ENST00000488386 ATXN8OSP0DMR3 200 aa13.38□□□□□ -0.27
CDHR3-213ENST00000488386 CACNB1Q02641 598 aaPredicted RBP13.34□□□□□ -0.27
CDHR3-213ENST00000488386 APLP2Q06481 763 aa13.31□□□□□ -0.28
CDHR3-213ENST00000488386 CAPN15O75808 1086 aa13.3□□□□□ -0.28
CDHR3-213ENST00000488386 TRHP20396 242 aaPredicted RBP13.25□□□□□ -0.29
CDHR3-213ENST00000488386 ZNF219Q9P2Y4 722 aaPredicted RBP13.2□□□□□ -0.3
CDHR3-213ENST00000488386 ABCB7O75027 752 aa13.11□□□□□ -0.31
CDHR3-213ENST00000488386 DSG3P32926 999 aa13.11□□□□□ -0.31
CDHR3-213ENST00000488386 POLA2Q14181 598 aa13.04□□□□□ -0.32
CDHR3-213ENST00000488386 CCDC180Q9P1Z9 1646 aa12.97□□□□□ -0.33
CDHR3-213ENST00000488386 ABCC9O60706 1549 aa12.96□□□□□ -0.33
CDHR3-213ENST00000488386 MKRN4PQ13434 485 aaPredicted RBP12.86□□□□□ -0.35
CDHR3-213ENST00000488386 ZBTB12Q9Y330 459 aaPredicted RBP12.74□□□□□ -0.37
CDHR3-213ENST00000488386 FBLN2P98095 1184 aa12.73□□□□□ -0.37
CDHR3-213ENST00000488386 OSCARQ8IYS5 282 aa12.66□□□□□ -0.38
CDHR3-213ENST00000488386 FKBP8Q14318 412 aa12.56□□□□□ -0.4
CDHR3-213ENST00000488386 SPDYE4A6NLX3 237 aa12.5□□□□□ -0.41
CDHR3-213ENST00000488386 SPDYE2BA6NHP3 402 aa12.45□□□□□ -0.42
CDHR3-213ENST00000488386 SPDYE6P0CI01 402 aa12.45□□□□□ -0.42
CDHR3-213ENST00000488386 SPDYE2Q495Y8 402 aa12.45□□□□□ -0.42
CDHR3-213ENST00000488386 ZNF692Q9BU19 519 aaPredicted RBP12.41□□□□□ -0.42
CDHR3-213ENST00000488386 SSUH2Q9Y2M2 353 aa12.41□□□□□ -0.42
CDHR3-213ENST00000488386 RBM42Q9BTD8 480 aaKnown RBP12.39□□□□□ -0.43
CDHR3-213ENST00000488386 PROM2Q8N271 834 aa12.34□□□□□ -0.43
CDHR3-213ENST00000488386 DCAF8L2P0C7V8 631 aa12.33□□□□□ -0.44
CDHR3-213ENST00000488386 RB1CC1Q8TDY2 1594 aa12.3□□□□□ -0.44
CDHR3-213ENST00000488386 PABPN1Q86U42 306 aaKnown RBP eCLIP12.28□□□□□ -0.44
CDHR3-213ENST00000488386 AKT1S1Q96B36 256 aa12.28□□□□□ -0.44
CDHR3-213ENST00000488386 NACADO15069 1562 aa12.22□□□□□ -0.45
CDHR3-213ENST00000488386 REM2Q8IYK8 340 aaPredicted RBP12.2□□□□□ -0.46
CDHR3-213ENST00000488386 UNC13AQ9UPW8 1703 aa12.12□□□□□ -0.47
CDHR3-213ENST00000488386 PITPNM1O00562 1244 aa12.1□□□□□ -0.47
CDHR3-213ENST00000488386 ZCCHC6Q5VYS8 1495 aaKnown RBP12.09□□□□□ -0.47
CDHR3-213ENST00000488386 SPDYE1Q8NFV5 336 aaPredicted RBP12.06□□□□□ -0.48
CDHR3-213ENST00000488386 CLEC11AQ9Y240 323 aa12.04□□□□□ -0.48
CDHR3-213ENST00000488386 MYO15BQ96JP2 1530 aa12.03□□□□□ -0.48
CDHR3-213ENST00000488386 FBXO3Q9UK99 471 aa12□□□□□ -0.49
CDHR3-213ENST00000488386 STAG3Q9UJ98 1225 aa11.99□□□□□ -0.49
CDHR3-213ENST00000488386 BICRAQ9NZM4 1560 aa11.99□□□□□ -0.49
CDHR3-213ENST00000488386 DCAF1Q9Y4B6 1507 aa11.95□□□□□ -0.5
CDHR3-213ENST00000488386 SCRIBQ14160 1630 aa11.94□□□□□ -0.5
CDHR3-213ENST00000488386 VASPP50552 380 aaPredicted RBP11.93□□□□□ -0.5
CDHR3-213ENST00000488386 CHRDL2Q6WN34 429 aa11.93□□□□□ -0.5
CDHR3-213ENST00000488386 PRR29P0C7W0 189 aa11.91□□□□□ -0.5
CDHR3-213ENST00000488386 CREBZFQ9NS37 354 aa11.84□□□□□ -0.51
CDHR3-213ENST00000488386 FXR2P51116 673 aaKnown RBP eCLIP11.83□□□□□ -0.52
CDHR3-213ENST00000488386 CHADLQ6NUI6 762 aa11.82□□□□□ -0.52
CDHR3-213ENST00000488386 PIP4P2Q8N4L2 257 aa11.82□□□□□ -0.52
CDHR3-213ENST00000488386 IFNLR1Q8IU57 520 aaPredicted RBP11.81□□□□□ -0.52
CDHR3-213ENST00000488386 MIER1Q8N108 512 aa11.81□□□□□ -0.52
CDHR3-213ENST00000488386 PLCD3Q8N3E9 789 aa11.8□□□□□ -0.52
CDHR3-213ENST00000488386 PRKAR2AP13861 404 aaKnown RBP11.76□□□□□ -0.53
CDHR3-213ENST00000488386 MNX1P50219 401 aaPredicted RBP11.74□□□□□ -0.53
CDHR3-213ENST00000488386 CC2D2AQ9P2K1 1620 aa11.69□□□□□ -0.54
CDHR3-213ENST00000488386 SHROOM4Q9ULL8 1493 aa11.69□□□□□ -0.54
CDHR3-213ENST00000488386 EIF4G1Q04637 1599 aaKnown RBP11.67□□□□□ -0.54
CDHR3-213ENST00000488386 PLEKHG5O94827 1062 aa11.66□□□□□ -0.54
CDHR3-213ENST00000488386 KLHL34Q8N239 644 aa11.66□□□□□ -0.54
CDHR3-213ENST00000488386 FARP1Q9Y4F1 1045 aaPredicted RBP11.65□□□□□ -0.54
CDHR3-213ENST00000488386 CECR2Q9BXF3 1484 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms