RNA–Protein interactions for RNA: ENST00000488053.1

TNFSF4-203, Transcript of TNF superfamily member 4, humanhuman

TSL 3

Gene TNFSF4, Length 520 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF4-203ENST00000488053 AEBP2Q6ZN18 517 aaPredicted RBP24.41■■□□□ 1.5
TNFSF4-203ENST00000488053 CHIC1Q5VXU3 224 aa24■■□□□ 1.43
TNFSF4-203ENST00000488053 PHF23Q9BUL5 403 aaPredicted RBP21.06■□□□□ 0.96
TNFSF4-203ENST00000488053 SENP3Q9H4L4 574 aaPredicted RBP20.79■□□□□ 0.92
TNFSF4-203ENST00000488053 PLPPR3Q6T4P5 718 aa19.57■□□□□ 0.72
TNFSF4-203ENST00000488053 FOXD1Q16676 465 aa19.21■□□□□ 0.67
TNFSF4-203ENST00000488053 ADRA2BP18089 450 aa18.55■□□□□ 0.56
TNFSF4-203ENST00000488053 PPP6R1Q9UPN7 881 aa18.54■□□□□ 0.56
TNFSF4-203ENST00000488053 PIAS4Q8N2W9 510 aaPredicted RBP18.17■□□□□ 0.5
TNFSF4-203ENST00000488053 MSH5O43196 834 aa17.75■□□□□ 0.43
TNFSF4-203ENST00000488053 PPP4R3CPQ6ZMV5 832 aa17.22■□□□□ 0.35
TNFSF4-203ENST00000488053 SCAF1Q9H7N4 1312 aaKnown RBP17.07■□□□□ 0.32
TNFSF4-203ENST00000488053 KCNA4P22459 653 aa16.93■□□□□ 0.3
TNFSF4-203ENST00000488053 NCBP3Q53F19 620 aaKnown RBP16.87■□□□□ 0.29
TNFSF4-203ENST00000488053 MAPK8IP2Q13387 824 aaPredicted RBP16.77■□□□□ 0.28
TNFSF4-203ENST00000488053 CNKSR2Q8WXI2 1034 aa16.75■□□□□ 0.27
TNFSF4-203ENST00000488053 DMRT2Q9Y5R5 561 aa16.59■□□□□ 0.25
TNFSF4-203ENST00000488053 NPM3O75607 178 aaKnown RBP16.55■□□□□ 0.24
TNFSF4-203ENST00000488053 RNF216Q9NWF9 866 aaPredicted RBP16.39■□□□□ 0.21
TNFSF4-203ENST00000488053 HOXD11P31277 338 aaPredicted RBP16.28■□□□□ 0.2
TNFSF4-203ENST00000488053 SLC4A1APQ9BWU0 796 aaKnown RBP16.18■□□□□ 0.18
TNFSF4-203ENST00000488053 DNAJC5BQ9UF47 199 aa16.12■□□□□ 0.17
TNFSF4-203ENST00000488053 POTEDQ86YR6 584 aa15.9■□□□□ 0.14
TNFSF4-203ENST00000488053 DCAF8L1A6NGE4 600 aa15.86■□□□□ 0.13
TNFSF4-203ENST00000488053 EHMT2Q96KQ7 1210 aa15.81■□□□□ 0.12
TNFSF4-203ENST00000488053 NISCHQ9Y2I1 1504 aa15.76■□□□□ 0.11
TNFSF4-203ENST00000488053 FOXD4L1Q9NU39 408 aa15.6■□□□□ 0.09
TNFSF4-203ENST00000488053 SLC4A2P04920 1241 aa15.58■□□□□ 0.08
TNFSF4-203ENST00000488053 CSRNP3Q8WYN3 585 aa15.57■□□□□ 0.08
TNFSF4-203ENST00000488053 ZBTB22O15209 634 aa15.56■□□□□ 0.08
TNFSF4-203ENST00000488053 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.54■□□□□ 0.08
TNFSF4-203ENST00000488053 MYCNP04198 464 aaPredicted RBP15.33■□□□□ 0.04
TNFSF4-203ENST00000488053 U3KPZ7 1027 aaPredicted RBP15.26■□□□□ 0.03
TNFSF4-203ENST00000488053 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.2■□□□□ 0.02
TNFSF4-203ENST00000488053 HNRNPUL2Q1KMD3 747 aaKnown RBP15.2■□□□□ 0.02
TNFSF4-203ENST00000488053 RNF39Q9H2S5 420 aa15.18■□□□□ 0.02
TNFSF4-203ENST00000488053 SAMD1Q6SPF0 538 aaPredicted RBP15.13■□□□□ 0.01
TNFSF4-203ENST00000488053 ATXN8OSP0DMR3 200 aa15.08■□□□□ 0
TNFSF4-203ENST00000488053 APLP2Q06481 763 aa15.04■□□□□ -0
TNFSF4-203ENST00000488053 C1QBPQ07021 282 aaKnown RBP15.04■□□□□ -0
TNFSF4-203ENST00000488053 ATF5Q9Y2D1 282 aaPredicted RBP14.83□□□□□ -0.04
TNFSF4-203ENST00000488053 SPINK5Q9NQ38 1064 aaPredicted RBP14.78□□□□□ -0.04
TNFSF4-203ENST00000488053 CAPN15O75808 1086 aa14.76□□□□□ -0.05
TNFSF4-203ENST00000488053 ZNF219Q9P2Y4 722 aaPredicted RBP14.76□□□□□ -0.05
TNFSF4-203ENST00000488053 CACNB1Q02641 598 aaPredicted RBP14.71□□□□□ -0.05
TNFSF4-203ENST00000488053 TRHP20396 242 aaPredicted RBP14.7□□□□□ -0.06
TNFSF4-203ENST00000488053 POLA2Q14181 598 aa14.49□□□□□ -0.09
TNFSF4-203ENST00000488053 DSG3P32926 999 aa14.47□□□□□ -0.09
TNFSF4-203ENST00000488053 ABCB7O75027 752 aa14.46□□□□□ -0.09
TNFSF4-203ENST00000488053 ZBTB12Q9Y330 459 aaPredicted RBP14.35□□□□□ -0.11
TNFSF4-203ENST00000488053 FBLN2P98095 1184 aa14.31□□□□□ -0.12
TNFSF4-203ENST00000488053 ABCC9O60706 1549 aa14.25□□□□□ -0.13
TNFSF4-203ENST00000488053 MKRN4PQ13434 485 aaPredicted RBP14.21□□□□□ -0.13
TNFSF4-203ENST00000488053 CCDC180Q9P1Z9 1646 aa14.15□□□□□ -0.14
TNFSF4-203ENST00000488053 FKBP8Q14318 412 aa14.09□□□□□ -0.15
TNFSF4-203ENST00000488053 SPDYE4A6NLX3 237 aa13.99□□□□□ -0.17
TNFSF4-203ENST00000488053 OSCARQ8IYS5 282 aa13.99□□□□□ -0.17
TNFSF4-203ENST00000488053 SPDYE2BA6NHP3 402 aa13.94□□□□□ -0.18
TNFSF4-203ENST00000488053 SPDYE6P0CI01 402 aa13.94□□□□□ -0.18
TNFSF4-203ENST00000488053 SPDYE2Q495Y8 402 aa13.94□□□□□ -0.18
TNFSF4-203ENST00000488053 ZNF692Q9BU19 519 aaPredicted RBP13.87□□□□□ -0.19
TNFSF4-203ENST00000488053 RBM42Q9BTD8 480 aaKnown RBP13.86□□□□□ -0.19
TNFSF4-203ENST00000488053 SSUH2Q9Y2M2 353 aa13.81□□□□□ -0.2
TNFSF4-203ENST00000488053 PROM2Q8N271 834 aa13.78□□□□□ -0.2
TNFSF4-203ENST00000488053 PABPN1Q86U42 306 aaKnown RBP eCLIP13.68□□□□□ -0.22
TNFSF4-203ENST00000488053 AKT1S1Q96B36 256 aa13.68□□□□□ -0.22
TNFSF4-203ENST00000488053 FBXO3Q9UK99 471 aa13.64□□□□□ -0.23
TNFSF4-203ENST00000488053 STAG3Q9UJ98 1225 aa13.54□□□□□ -0.24
TNFSF4-203ENST00000488053 REM2Q8IYK8 340 aaPredicted RBP13.52□□□□□ -0.25
TNFSF4-203ENST00000488053 RB1CC1Q8TDY2 1594 aa13.5□□□□□ -0.25
TNFSF4-203ENST00000488053 SPDYE1Q8NFV5 336 aaPredicted RBP13.5□□□□□ -0.25
TNFSF4-203ENST00000488053 DCAF8L2P0C7V8 631 aa13.41□□□□□ -0.26
TNFSF4-203ENST00000488053 VASPP50552 380 aaPredicted RBP13.4□□□□□ -0.26
TNFSF4-203ENST00000488053 CLEC11AQ9Y240 323 aa13.38□□□□□ -0.27
TNFSF4-203ENST00000488053 NACADO15069 1562 aa13.37□□□□□ -0.27
TNFSF4-203ENST00000488053 PITPNM1O00562 1244 aa13.36□□□□□ -0.27
TNFSF4-203ENST00000488053 PRR29P0C7W0 189 aa13.3□□□□□ -0.28
TNFSF4-203ENST00000488053 PLCD3Q8N3E9 789 aa13.27□□□□□ -0.29
TNFSF4-203ENST00000488053 MIER1Q8N108 512 aa13.26□□□□□ -0.29
TNFSF4-203ENST00000488053 UNC13AQ9UPW8 1703 aa13.26□□□□□ -0.29
TNFSF4-203ENST00000488053 PLEKHG5O94827 1062 aa13.25□□□□□ -0.29
TNFSF4-203ENST00000488053 CHRDL2Q6WN34 429 aa13.2□□□□□ -0.3
TNFSF4-203ENST00000488053 IFNLR1Q8IU57 520 aaPredicted RBP13.19□□□□□ -0.3
TNFSF4-203ENST00000488053 ZBTB47Q9UFB7 747 aaPredicted RBP13.17□□□□□ -0.3
TNFSF4-203ENST00000488053 KLHL34Q8N239 644 aa13.15□□□□□ -0.3
TNFSF4-203ENST00000488053 CREBZFQ9NS37 354 aa13.13□□□□□ -0.31
TNFSF4-203ENST00000488053 MYO15BQ96JP2 1530 aa13.13□□□□□ -0.31
TNFSF4-203ENST00000488053 BICRAQ9NZM4 1560 aa13.12□□□□□ -0.31
TNFSF4-203ENST00000488053 FXR2P51116 673 aaKnown RBP eCLIP13.09□□□□□ -0.31
TNFSF4-203ENST00000488053 AMER1Q5JTC6 1135 aaPredicted RBP13.08□□□□□ -0.32
TNFSF4-203ENST00000488053 SPOCK2Q92563 424 aa13.06□□□□□ -0.32
TNFSF4-203ENST00000488053 ZCCHC6Q5VYS8 1495 aaKnown RBP13.05□□□□□ -0.32
TNFSF4-203ENST00000488053 PRKAR2AP13861 404 aaKnown RBP13.03□□□□□ -0.32
TNFSF4-203ENST00000488053 PIP4P2Q8N4L2 257 aa13.03□□□□□ -0.32
TNFSF4-203ENST00000488053 CHADLQ6NUI6 762 aa13.01□□□□□ -0.33
TNFSF4-203ENST00000488053 MNX1P50219 401 aaPredicted RBP13□□□□□ -0.33
TNFSF4-203ENST00000488053 NPM1P06748 294 aaKnown RBP eCLIP12.98□□□□□ -0.33
TNFSF4-203ENST00000488053 RTN4Q9NQC3 1192 aaKnown RBP12.98□□□□□ -0.33
TNFSF4-203ENST00000488053 SCRIBQ14160 1630 aa12.96□□□□□ -0.33
TNFSF4-203ENST00000488053 DCAF1Q9Y4B6 1507 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms