RNA–Protein interactions for RNA: ENST00000487294.1

R3HDM1-218, Transcript of R3H domain containing 1, humanhuman

TSL 3

Gene R3HDM1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM1-218ENST00000487294 AEBP2Q6ZN18 517 aaPredicted RBP23.52■■□□□ 1.36
R3HDM1-218ENST00000487294 CHIC1Q5VXU3 224 aa22.32■■□□□ 1.16
R3HDM1-218ENST00000487294 SENP3Q9H4L4 574 aaPredicted RBP20.17■□□□□ 0.82
R3HDM1-218ENST00000487294 PHF23Q9BUL5 403 aaPredicted RBP19.82■□□□□ 0.76
R3HDM1-218ENST00000487294 FOXD1Q16676 465 aa18.73■□□□□ 0.59
R3HDM1-218ENST00000487294 PLPPR3Q6T4P5 718 aa17.81■□□□□ 0.44
R3HDM1-218ENST00000487294 MSH5O43196 834 aa17.65■□□□□ 0.42
R3HDM1-218ENST00000487294 PIAS4Q8N2W9 510 aaPredicted RBP17.51■□□□□ 0.39
R3HDM1-218ENST00000487294 PPP6R1Q9UPN7 881 aa17.41■□□□□ 0.38
R3HDM1-218ENST00000487294 ADRA2BP18089 450 aa17.35■□□□□ 0.37
R3HDM1-218ENST00000487294 POTEDQ86YR6 584 aa17.28■□□□□ 0.36
R3HDM1-218ENST00000487294 SCAF1Q9H7N4 1312 aaKnown RBP15.98■□□□□ 0.15
R3HDM1-218ENST00000487294 DMRT2Q9Y5R5 561 aa15.97■□□□□ 0.15
R3HDM1-218ENST00000487294 MAPK8IP2Q13387 824 aaPredicted RBP15.93■□□□□ 0.14
R3HDM1-218ENST00000487294 PPP4R3CPQ6ZMV5 832 aa15.57■□□□□ 0.08
R3HDM1-218ENST00000487294 HOXD11P31277 338 aaPredicted RBP15.35■□□□□ 0.05
R3HDM1-218ENST00000487294 CNKSR2Q8WXI2 1034 aa15.33■□□□□ 0.04
R3HDM1-218ENST00000487294 DCAF8L1A6NGE4 600 aa15.25■□□□□ 0.03
R3HDM1-218ENST00000487294 RNF216Q9NWF9 866 aaPredicted RBP15.22■□□□□ 0.03
R3HDM1-218ENST00000487294 CACNB1Q02641 598 aaPredicted RBP15.13■□□□□ 0.01
R3HDM1-218ENST00000487294 RNF39Q9H2S5 420 aa15.01□□□□□ -0.01
R3HDM1-218ENST00000487294 NCBP3Q53F19 620 aaKnown RBP15□□□□□ -0.01
R3HDM1-218ENST00000487294 DNAJC5BQ9UF47 199 aa14.91□□□□□ -0.02
R3HDM1-218ENST00000487294 C1QBPQ07021 282 aaKnown RBP14.82□□□□□ -0.04
R3HDM1-218ENST00000487294 NPM3O75607 178 aaKnown RBP14.73□□□□□ -0.05
R3HDM1-218ENST00000487294 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.6□□□□□ -0.07
R3HDM1-218ENST00000487294 KCNA4P22459 653 aa14.57□□□□□ -0.08
R3HDM1-218ENST00000487294 U3KPZ7 1027 aaPredicted RBP14.28□□□□□ -0.12
R3HDM1-218ENST00000487294 CAPN15O75808 1086 aa14.07□□□□□ -0.16
R3HDM1-218ENST00000487294 SLC4A2P04920 1241 aa14.07□□□□□ -0.16
R3HDM1-218ENST00000487294 SPINK5Q9NQ38 1064 aaPredicted RBP14.06□□□□□ -0.16
R3HDM1-218ENST00000487294 DSG3P32926 999 aa14.02□□□□□ -0.17
R3HDM1-218ENST00000487294 APLP2Q06481 763 aa13.98□□□□□ -0.17
R3HDM1-218ENST00000487294 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.93□□□□□ -0.18
R3HDM1-218ENST00000487294 HNRNPUL2Q1KMD3 747 aaKnown RBP13.93□□□□□ -0.18
R3HDM1-218ENST00000487294 ZNF219Q9P2Y4 722 aaPredicted RBP13.86□□□□□ -0.19
R3HDM1-218ENST00000487294 SAMD1Q6SPF0 538 aaPredicted RBP13.82□□□□□ -0.2
R3HDM1-218ENST00000487294 SLC4A1APQ9BWU0 796 aaKnown RBP13.82□□□□□ -0.2
R3HDM1-218ENST00000487294 TRHP20396 242 aaPredicted RBP13.8□□□□□ -0.2
R3HDM1-218ENST00000487294 ABCB7O75027 752 aa13.7□□□□□ -0.22
R3HDM1-218ENST00000487294 MYCNP04198 464 aaPredicted RBP13.68□□□□□ -0.22
R3HDM1-218ENST00000487294 POTEHQ6S545 545 aa13.54□□□□□ -0.24
R3HDM1-218ENST00000487294 FOXD4L1Q9NU39 408 aa13.48□□□□□ -0.25
R3HDM1-218ENST00000487294 RBM42Q9BTD8 480 aaKnown RBP13.45□□□□□ -0.26
R3HDM1-218ENST00000487294 ZBTB22O15209 634 aa13.42□□□□□ -0.26
R3HDM1-218ENST00000487294 POLA2Q14181 598 aa13.42□□□□□ -0.26
R3HDM1-218ENST00000487294 EHMT2Q96KQ7 1210 aa13.26□□□□□ -0.29
R3HDM1-218ENST00000487294 ATF5Q9Y2D1 282 aaPredicted RBP13.26□□□□□ -0.29
R3HDM1-218ENST00000487294 ZBTB12Q9Y330 459 aaPredicted RBP13.26□□□□□ -0.29
R3HDM1-218ENST00000487294 CSRNP3Q8WYN3 585 aa13.21□□□□□ -0.29
R3HDM1-218ENST00000487294 CHRDL2Q6WN34 429 aa13.13□□□□□ -0.31
R3HDM1-218ENST00000487294 ATXN8OSP0DMR3 200 aa13.11□□□□□ -0.31
R3HDM1-218ENST00000487294 AKT1S1Q96B36 256 aa13.09□□□□□ -0.31
R3HDM1-218ENST00000487294 OSCARQ8IYS5 282 aa13.02□□□□□ -0.33
R3HDM1-218ENST00000487294 NISCHQ9Y2I1 1504 aa12.99□□□□□ -0.33
R3HDM1-218ENST00000487294 REM2Q8IYK8 340 aaPredicted RBP12.93□□□□□ -0.34
R3HDM1-218ENST00000487294 FBLN2P98095 1184 aa12.86□□□□□ -0.35
R3HDM1-218ENST00000487294 SPDYE2BA6NHP3 402 aa12.8□□□□□ -0.36
R3HDM1-218ENST00000487294 SPDYE6P0CI01 402 aa12.8□□□□□ -0.36
R3HDM1-218ENST00000487294 SPDYE2Q495Y8 402 aa12.8□□□□□ -0.36
R3HDM1-218ENST00000487294 PITPNM1O00562 1244 aa12.79□□□□□ -0.36
R3HDM1-218ENST00000487294 PIP4P2Q8N4L2 257 aa12.78□□□□□ -0.36
R3HDM1-218ENST00000487294 FXR2P51116 673 aaKnown RBP eCLIP12.71□□□□□ -0.37
R3HDM1-218ENST00000487294 MKRN4PQ13434 485 aaPredicted RBP12.68□□□□□ -0.38
R3HDM1-218ENST00000487294 SP7Q8TDD2 431 aaPredicted RBP12.67□□□□□ -0.38
R3HDM1-218ENST00000487294 SSUH2Q9Y2M2 353 aa12.61□□□□□ -0.39
R3HDM1-218ENST00000487294 SPDYE1Q8NFV5 336 aaPredicted RBP12.6□□□□□ -0.39
R3HDM1-218ENST00000487294 ZNF692Q9BU19 519 aaPredicted RBP12.58□□□□□ -0.4
R3HDM1-218ENST00000487294 HAX1O00165 279 aa12.55□□□□□ -0.4
R3HDM1-218ENST00000487294 CLEC11AQ9Y240 323 aa12.5□□□□□ -0.41
R3HDM1-218ENST00000487294 PRKAR2AP13861 404 aaKnown RBP12.46□□□□□ -0.41
R3HDM1-218ENST00000487294 PABPN1Q86U42 306 aaKnown RBP eCLIP12.39□□□□□ -0.43
R3HDM1-218ENST00000487294 EVX2Q03828 476 aa12.34□□□□□ -0.43
R3HDM1-218ENST00000487294 PRR29P0C7W0 189 aa12.32□□□□□ -0.44
R3HDM1-218ENST00000487294 C19orf67A6NJJ6 358 aa12.31□□□□□ -0.44
R3HDM1-218ENST00000487294 CHADLQ6NUI6 762 aa12.25□□□□□ -0.45
R3HDM1-218ENST00000487294 FARP1Q9Y4F1 1045 aaPredicted RBP12.12□□□□□ -0.47
R3HDM1-218ENST00000487294 GABBR2O75899 941 aa12.11□□□□□ -0.47
R3HDM1-218ENST00000487294 STAG3Q9UJ98 1225 aa12.1□□□□□ -0.47
R3HDM1-218ENST00000487294 SPDYE4A6NLX3 237 aa12.07□□□□□ -0.48
R3HDM1-218ENST00000487294 CD44P16070 742 aaKnown RBP12.07□□□□□ -0.48
R3HDM1-218ENST00000487294 CLCN6P51797 869 aa12.01□□□□□ -0.49
R3HDM1-218ENST00000487294 CREBZFQ9NS37 354 aa11.99□□□□□ -0.49
R3HDM1-218ENST00000487294 FKBP8Q14318 412 aa11.92□□□□□ -0.5
R3HDM1-218ENST00000487294 ZNF579Q8NAF0 562 aaKnown RBP11.92□□□□□ -0.5
R3HDM1-218ENST00000487294 ZRANB1Q9UGI0 708 aa11.87□□□□□ -0.51
R3HDM1-218ENST00000487294 LHX8Q68G74 356 aa11.86□□□□□ -0.51
R3HDM1-218ENST00000487294 PROM2Q8N271 834 aa11.85□□□□□ -0.51
R3HDM1-218ENST00000487294 POTEIP0CG38 1075 aa11.83□□□□□ -0.52
R3HDM1-218ENST00000487294 PAK3O75914 559 aaPredicted RBP11.82□□□□□ -0.52
R3HDM1-218ENST00000487294 NPM1P06748 294 aaKnown RBP eCLIP11.81□□□□□ -0.52
R3HDM1-218ENST00000487294 DCBLD2Q96PD2 775 aa11.8□□□□□ -0.52
R3HDM1-218ENST00000487294 ABCC9O60706 1549 aa11.77□□□□□ -0.52
R3HDM1-218ENST00000487294 MNX1P50219 401 aaPredicted RBP11.77□□□□□ -0.53
R3HDM1-218ENST00000487294 CCDC180Q9P1Z9 1646 aa11.74□□□□□ -0.53
R3HDM1-218ENST00000487294 GALR2O43603 387 aaPredicted RBP11.71□□□□□ -0.53
R3HDM1-218ENST00000487294 PHF12Q96QT6 1004 aa11.69□□□□□ -0.54
R3HDM1-218ENST00000487294 PLEKHG5O94827 1062 aa11.59□□□□□ -0.55
R3HDM1-218ENST00000487294 MS4A3Q96HJ5 214 aa11.55□□□□□ -0.56
R3HDM1-218ENST00000487294 TSPYL2Q9H2G4 693 aaPredicted RBP11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms