RNA–Protein interactions for RNA: ENST00000487211.5

RTFDC1-209, Transcript of Protein RTF2 homolog, humanhuman

TSL 3

Gene RTFDC1, Length 411 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-209ENST00000487211 AEBP2Q6ZN18 517 aaPredicted RBP24.03■■□□□ 1.44
RTFDC1-209ENST00000487211 CHIC1Q5VXU3 224 aa23.89■■□□□ 1.41
RTFDC1-209ENST00000487211 PHF23Q9BUL5 403 aaPredicted RBP21.06■□□□□ 0.96
RTFDC1-209ENST00000487211 SENP3Q9H4L4 574 aaPredicted RBP20.32■□□□□ 0.84
RTFDC1-209ENST00000487211 PLPPR3Q6T4P5 718 aa19.59■□□□□ 0.73
RTFDC1-209ENST00000487211 FOXD1Q16676 465 aa18.81■□□□□ 0.6
RTFDC1-209ENST00000487211 ADRA2BP18089 450 aa18.48■□□□□ 0.55
RTFDC1-209ENST00000487211 PPP6R1Q9UPN7 881 aa18.45■□□□□ 0.54
RTFDC1-209ENST00000487211 PIAS4Q8N2W9 510 aaPredicted RBP17.88■□□□□ 0.45
RTFDC1-209ENST00000487211 KCNA4P22459 653 aa17.43■□□□□ 0.38
RTFDC1-209ENST00000487211 PPP4R3CPQ6ZMV5 832 aa17.34■□□□□ 0.37
RTFDC1-209ENST00000487211 MSH5O43196 834 aa17.17■□□□□ 0.34
RTFDC1-209ENST00000487211 NCBP3Q53F19 620 aaKnown RBP17■□□□□ 0.31
RTFDC1-209ENST00000487211 SCAF1Q9H7N4 1312 aaKnown RBP16.88■□□□□ 0.29
RTFDC1-209ENST00000487211 NPM3O75607 178 aaKnown RBP16.74■□□□□ 0.27
RTFDC1-209ENST00000487211 CNKSR2Q8WXI2 1034 aa16.74■□□□□ 0.27
RTFDC1-209ENST00000487211 EHMT2Q96KQ7 1210 aa16.73■□□□□ 0.27
RTFDC1-209ENST00000487211 SLC4A1APQ9BWU0 796 aaKnown RBP16.68■□□□□ 0.26
RTFDC1-209ENST00000487211 MAPK8IP2Q13387 824 aaPredicted RBP16.64■□□□□ 0.25
RTFDC1-209ENST00000487211 CSRNP3Q8WYN3 585 aa16.29■□□□□ 0.2
RTFDC1-209ENST00000487211 RNF216Q9NWF9 866 aaPredicted RBP16.29■□□□□ 0.2
RTFDC1-209ENST00000487211 DMRT2Q9Y5R5 561 aa16.28■□□□□ 0.2
RTFDC1-209ENST00000487211 DNAJC5BQ9UF47 199 aa16.12■□□□□ 0.17
RTFDC1-209ENST00000487211 HOXD11P31277 338 aaPredicted RBP16.1■□□□□ 0.17
RTFDC1-209ENST00000487211 ZBTB22O15209 634 aa16.03■□□□□ 0.16
RTFDC1-209ENST00000487211 FOXD4L1Q9NU39 408 aa15.9■□□□□ 0.14
RTFDC1-209ENST00000487211 SLC4A2P04920 1241 aa15.7■□□□□ 0.1
RTFDC1-209ENST00000487211 DCAF8L1A6NGE4 600 aa15.63■□□□□ 0.09
RTFDC1-209ENST00000487211 MYCNP04198 464 aaPredicted RBP15.47■□□□□ 0.07
RTFDC1-209ENST00000487211 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.41■□□□□ 0.063e-8■■□□□ 14.4
RTFDC1-209ENST00000487211 ATXN8OSP0DMR3 200 aa15.29■□□□□ 0.04
RTFDC1-209ENST00000487211 U3KPZ7 1027 aaPredicted RBP15.17■□□□□ 0.02
RTFDC1-209ENST00000487211 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.13■□□□□ 0.01
RTFDC1-209ENST00000487211 HNRNPUL2Q1KMD3 747 aaKnown RBP15.13■□□□□ 0.01
RTFDC1-209ENST00000487211 SAMD1Q6SPF0 538 aaPredicted RBP15.1■□□□□ 0.01
RTFDC1-209ENST00000487211 ATF5Q9Y2D1 282 aaPredicted RBP15.03■□□□□ -0
RTFDC1-209ENST00000487211 POTEDQ86YR6 584 aa14.89□□□□□ -0.03
RTFDC1-209ENST00000487211 APLP2Q06481 763 aa14.86□□□□□ -0.03
RTFDC1-209ENST00000487211 RNF39Q9H2S5 420 aa14.76□□□□□ -0.05
RTFDC1-209ENST00000487211 ZNF219Q9P2Y4 722 aaPredicted RBP14.75□□□□□ -0.05
RTFDC1-209ENST00000487211 FKBP8Q14318 412 aa14.73□□□□□ -0.05
RTFDC1-209ENST00000487211 SPINK5Q9NQ38 1064 aaPredicted RBP14.64□□□□□ -0.07
RTFDC1-209ENST00000487211 TRHP20396 242 aaPredicted RBP14.62□□□□□ -0.07
RTFDC1-209ENST00000487211 C1QBPQ07021 282 aaKnown RBP14.6□□□□□ -0.07
RTFDC1-209ENST00000487211 CAPN15O75808 1086 aa14.58□□□□□ -0.08
RTFDC1-209ENST00000487211 NISCHQ9Y2I1 1504 aa14.55□□□□□ -0.08
RTFDC1-209ENST00000487211 POLA2Q14181 598 aa14.46□□□□□ -0.09
RTFDC1-209ENST00000487211 MKRN4PQ13434 485 aaPredicted RBP14.39□□□□□ -0.11
RTFDC1-209ENST00000487211 FBLN2P98095 1184 aa14.38□□□□□ -0.11
RTFDC1-209ENST00000487211 ABCB7O75027 752 aa14.35□□□□□ -0.11
RTFDC1-209ENST00000487211 SPDYE4A6NLX3 237 aa14.29□□□□□ -0.12
RTFDC1-209ENST00000487211 ZBTB12Q9Y330 459 aaPredicted RBP14.23□□□□□ -0.13
RTFDC1-209ENST00000487211 DSG3P32926 999 aa14.2□□□□□ -0.14
RTFDC1-209ENST00000487211 AMER1Q5JTC6 1135 aaPredicted RBP14.16□□□□□ -0.14
RTFDC1-209ENST00000487211 RTN4Q9NQC3 1192 aaKnown RBP14.15□□□□□ -0.14
RTFDC1-209ENST00000487211 CACNB1Q02641 598 aaPredicted RBP14.1□□□□□ -0.15
RTFDC1-209ENST00000487211 PROM2Q8N271 834 aa14.06□□□□□ -0.16
RTFDC1-209ENST00000487211 FBXO3Q9UK99 471 aa14.06□□□□□ -0.16
RTFDC1-209ENST00000487211 OSCARQ8IYS5 282 aa13.95□□□□□ -0.18
RTFDC1-209ENST00000487211 ZNF692Q9BU19 519 aaPredicted RBP13.92□□□□□ -0.18
RTFDC1-209ENST00000487211 SPDYE2BA6NHP3 402 aa13.89□□□□□ -0.19
RTFDC1-209ENST00000487211 SPDYE6P0CI01 402 aa13.89□□□□□ -0.19
RTFDC1-209ENST00000487211 SPDYE2Q495Y8 402 aa13.89□□□□□ -0.19
RTFDC1-209ENST00000487211 VASPP50552 380 aaPredicted RBP13.87□□□□□ -0.19
RTFDC1-209ENST00000487211 SSUH2Q9Y2M2 353 aa13.81□□□□□ -0.2
RTFDC1-209ENST00000487211 PABPN1Q86U42 306 aaKnown RBP eCLIP13.75□□□□□ -0.21
RTFDC1-209ENST00000487211 IFNLR1Q8IU57 520 aaPredicted RBP13.71□□□□□ -0.21
RTFDC1-209ENST00000487211 DNAJC5Q9H3Z4 198 aa13.68□□□□□ -0.22
RTFDC1-209ENST00000487211 STAG3Q9UJ98 1225 aa13.66□□□□□ -0.22
RTFDC1-209ENST00000487211 KLHL34Q8N239 644 aa13.57□□□□□ -0.24
RTFDC1-209ENST00000487211 PLCD3Q8N3E9 789 aa13.56□□□□□ -0.24
RTFDC1-209ENST00000487211 MIER1Q8N108 512 aa13.53□□□□□ -0.24
RTFDC1-209ENST00000487211 RBM42Q9BTD8 480 aaKnown RBP13.52□□□□□ -0.25
RTFDC1-209ENST00000487211 SPOCK2Q92563 424 aa13.49□□□□□ -0.25
RTFDC1-209ENST00000487211 SLC24A1O60721 1099 aa13.48□□□□□ -0.25
RTFDC1-209ENST00000487211 AKT1S1Q96B36 256 aa13.45□□□□□ -0.26
RTFDC1-209ENST00000487211 PLEKHG5O94827 1062 aa13.42□□□□□ -0.26
RTFDC1-209ENST00000487211 PKD2Q13563 968 aa13.41□□□□□ -0.26
RTFDC1-209ENST00000487211 SPDYE1Q8NFV5 336 aaPredicted RBP13.39□□□□□ -0.27
RTFDC1-209ENST00000487211 ABCC9O60706 1549 aa13.35□□□□□ -0.27
RTFDC1-209ENST00000487211 DCAF8L2P0C7V8 631 aa13.35□□□□□ -0.27
RTFDC1-209ENST00000487211 ZBTB47Q9UFB7 747 aaPredicted RBP13.34□□□□□ -0.27
RTFDC1-209ENST00000487211 CLEC11AQ9Y240 323 aa13.34□□□□□ -0.27
RTFDC1-209ENST00000487211 REM2Q8IYK8 340 aaPredicted RBP13.32□□□□□ -0.28
RTFDC1-209ENST00000487211 ECM2O94769 699 aaPredicted RBP13.29□□□□□ -0.28
RTFDC1-209ENST00000487211 PRR29P0C7W0 189 aa13.26□□□□□ -0.29
RTFDC1-209ENST00000487211 CIZ1Q9ULV3 898 aaPredicted RBP13.23□□□□□ -0.29
RTFDC1-209ENST00000487211 PITPNM1O00562 1244 aa13.17□□□□□ -0.3
RTFDC1-209ENST00000487211 CREBZFQ9NS37 354 aa13.17□□□□□ -0.3
RTFDC1-209ENST00000487211 RGL2O15211 777 aa13.13□□□□□ -0.31
RTFDC1-209ENST00000487211 NUBP1P53384 320 aa13.1□□□□□ -0.31
RTFDC1-209ENST00000487211 PLCB2Q00722 1185 aa13.1□□□□□ -0.31
RTFDC1-209ENST00000487211 GSE1Q14687 1217 aa13.09□□□□□ -0.31
RTFDC1-209ENST00000487211 MNX1P50219 401 aaPredicted RBP13.07□□□□□ -0.32
RTFDC1-209ENST00000487211 TRIM41Q8WV44 630 aa13.07□□□□□ -0.32
RTFDC1-209ENST00000487211 DCAF8Q5TAQ9 597 aa13.06□□□□□ -0.32
RTFDC1-209ENST00000487211 NPM1P06748 294 aaKnown RBP eCLIP13□□□□□ -0.33
RTFDC1-209ENST00000487211 FAM212AQ96EL1 285 aa13□□□□□ -0.33
RTFDC1-209ENST00000487211 BBXQ8WY36 941 aaPredicted RBP12.98□□□□□ -0.33
RTFDC1-209ENST00000487211 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms