RNA–Protein interactions for RNA: ENST00000486855.1

PHTF1-211, Transcript of putative homeodomain transcription factor 1, humanhuman

TSL 3

Gene PHTF1, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHTF1-211ENST00000486855 AEBP2Q6ZN18 517 aaPredicted RBP25.56■■□□□ 1.68
PHTF1-211ENST00000486855 CHIC1Q5VXU3 224 aa23.94■■□□□ 1.42
PHTF1-211ENST00000486855 SENP3Q9H4L4 574 aaPredicted RBP21.67■■□□□ 1.06
PHTF1-211ENST00000486855 PHF23Q9BUL5 403 aaPredicted RBP21.4■■□□□ 1.02
PHTF1-211ENST00000486855 FOXD1Q16676 465 aa20.33■□□□□ 0.85
PHTF1-211ENST00000486855 POTEDQ86YR6 584 aa19.07■□□□□ 0.64
PHTF1-211ENST00000486855 MSH5O43196 834 aa18.99■□□□□ 0.63
PHTF1-211ENST00000486855 PLPPR3Q6T4P5 718 aa18.94■□□□□ 0.62
PHTF1-211ENST00000486855 PPP6R1Q9UPN7 881 aa18.87■□□□□ 0.61
PHTF1-211ENST00000486855 PIAS4Q8N2W9 510 aaPredicted RBP18.86■□□□□ 0.61
PHTF1-211ENST00000486855 ADRA2BP18089 450 aa18.75■□□□□ 0.59
PHTF1-211ENST00000486855 MAPK8IP2Q13387 824 aaPredicted RBP17.32■□□□□ 0.36
PHTF1-211ENST00000486855 DMRT2Q9Y5R5 561 aa17.21■□□□□ 0.35
PHTF1-211ENST00000486855 SCAF1Q9H7N4 1312 aaKnown RBP16.96■□□□□ 0.3
PHTF1-211ENST00000486855 PPP4R3CPQ6ZMV5 832 aa16.62■□□□□ 0.25
PHTF1-211ENST00000486855 HOXD11P31277 338 aaPredicted RBP16.49■□□□□ 0.23
PHTF1-211ENST00000486855 CACNB1Q02641 598 aaPredicted RBP16.44■□□□□ 0.22
PHTF1-211ENST00000486855 DCAF8L1A6NGE4 600 aa16.39■□□□□ 0.21
PHTF1-211ENST00000486855 CNKSR2Q8WXI2 1034 aa16.32■□□□□ 0.2
PHTF1-211ENST00000486855 RNF39Q9H2S5 420 aa16.28■□□□□ 0.2
PHTF1-211ENST00000486855 RNF216Q9NWF9 866 aaPredicted RBP16.26■□□□□ 0.19
PHTF1-211ENST00000486855 C1QBPQ07021 282 aaKnown RBP15.94■□□□□ 0.14
PHTF1-211ENST00000486855 DNAJC5BQ9UF47 199 aa15.92■□□□□ 0.14
PHTF1-211ENST00000486855 NCBP3Q53F19 620 aaKnown RBP15.77■□□□□ 0.12
PHTF1-211ENST00000486855 NPM3O75607 178 aaKnown RBP15.71■□□□□ 0.11
PHTF1-211ENST00000486855 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.6■□□□□ 0.09
PHTF1-211ENST00000486855 U3KPZ7 1027 aaPredicted RBP15.37■□□□□ 0.05
PHTF1-211ENST00000486855 SPINK5Q9NQ38 1064 aaPredicted RBP15.23■□□□□ 0.03
PHTF1-211ENST00000486855 KCNA4P22459 653 aa15.21■□□□□ 0.03
PHTF1-211ENST00000486855 DSG3P32926 999 aa15.16■□□□□ 0.02
PHTF1-211ENST00000486855 SLC4A2P04920 1241 aa15.12■□□□□ 0.01
PHTF1-211ENST00000486855 CAPN15O75808 1086 aa15.09■□□□□ 0.01
PHTF1-211ENST00000486855 POTEHQ6S545 545 aa14.85□□□□□ -0.03
PHTF1-211ENST00000486855 TRHP20396 242 aaPredicted RBP14.8□□□□□ -0.04
PHTF1-211ENST00000486855 ABCB7O75027 752 aa14.79□□□□□ -0.04
PHTF1-211ENST00000486855 ZNF219Q9P2Y4 722 aaPredicted RBP14.74□□□□□ -0.05
PHTF1-211ENST00000486855 APLP2Q06481 763 aa14.69□□□□□ -0.06
PHTF1-211ENST00000486855 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.66□□□□□ -0.06
PHTF1-211ENST00000486855 HNRNPUL2Q1KMD3 747 aaKnown RBP14.66□□□□□ -0.06
PHTF1-211ENST00000486855 SAMD1Q6SPF0 538 aaPredicted RBP14.61□□□□□ -0.07
PHTF1-211ENST00000486855 MYCNP04198 464 aaPredicted RBP14.46□□□□□ -0.09
PHTF1-211ENST00000486855 POLA2Q14181 598 aa14.37□□□□□ -0.11
PHTF1-211ENST00000486855 RBM42Q9BTD8 480 aaKnown RBP14.34□□□□□ -0.11
PHTF1-211ENST00000486855 ATF5Q9Y2D1 282 aaPredicted RBP14.29□□□□□ -0.12
PHTF1-211ENST00000486855 SLC4A1APQ9BWU0 796 aaKnown RBP14.22□□□□□ -0.13
PHTF1-211ENST00000486855 CHRDL2Q6WN34 429 aa14.2□□□□□ -0.14
PHTF1-211ENST00000486855 FOXD4L1Q9NU39 408 aa14.2□□□□□ -0.14
PHTF1-211ENST00000486855 ZBTB22O15209 634 aa14.06□□□□□ -0.16
PHTF1-211ENST00000486855 NISCHQ9Y2I1 1504 aa14.02□□□□□ -0.16
PHTF1-211ENST00000486855 AKT1S1Q96B36 256 aa14.01□□□□□ -0.17
PHTF1-211ENST00000486855 OSCARQ8IYS5 282 aa13.98□□□□□ -0.17
PHTF1-211ENST00000486855 ZBTB12Q9Y330 459 aaPredicted RBP13.97□□□□□ -0.17
PHTF1-211ENST00000486855 REM2Q8IYK8 340 aaPredicted RBP13.92□□□□□ -0.18
PHTF1-211ENST00000486855 PIP4P2Q8N4L2 257 aa13.86□□□□□ -0.19
PHTF1-211ENST00000486855 PITPNM1O00562 1244 aa13.8□□□□□ -0.2
PHTF1-211ENST00000486855 SP7Q8TDD2 431 aaPredicted RBP13.8□□□□□ -0.2
PHTF1-211ENST00000486855 ATXN8OSP0DMR3 200 aa13.75□□□□□ -0.21
PHTF1-211ENST00000486855 FXR2P51116 673 aaKnown RBP eCLIP13.74□□□□□ -0.21
PHTF1-211ENST00000486855 MKRN4PQ13434 485 aaPredicted RBP13.61□□□□□ -0.23
PHTF1-211ENST00000486855 SPDYE2BA6NHP3 402 aa13.59□□□□□ -0.23
PHTF1-211ENST00000486855 SPDYE6P0CI01 402 aa13.59□□□□□ -0.23
PHTF1-211ENST00000486855 SPDYE2Q495Y8 402 aa13.59□□□□□ -0.23
PHTF1-211ENST00000486855 HAX1O00165 279 aa13.57□□□□□ -0.24
PHTF1-211ENST00000486855 EVX2Q03828 476 aa13.56□□□□□ -0.24
PHTF1-211ENST00000486855 FBLN2P98095 1184 aa13.53□□□□□ -0.24
PHTF1-211ENST00000486855 SSUH2Q9Y2M2 353 aa13.46□□□□□ -0.25
PHTF1-211ENST00000486855 PRKAR2AP13861 404 aaKnown RBP13.4□□□□□ -0.26
PHTF1-211ENST00000486855 SPDYE1Q8NFV5 336 aaPredicted RBP13.38□□□□□ -0.27
PHTF1-211ENST00000486855 CLEC11AQ9Y240 323 aa13.37□□□□□ -0.27
PHTF1-211ENST00000486855 ZNF692Q9BU19 519 aaPredicted RBP13.36□□□□□ -0.27
PHTF1-211ENST00000486855 C19orf67A6NJJ6 358 aa13.31□□□□□ -0.28
PHTF1-211ENST00000486855 CHADLQ6NUI6 762 aa13.24□□□□□ -0.29
PHTF1-211ENST00000486855 PABPN1Q86U42 306 aaKnown RBP eCLIP13.2□□□□□ -0.3
PHTF1-211ENST00000486855 GABBR2O75899 941 aa13.15□□□□□ -0.3
PHTF1-211ENST00000486855 CSRNP3Q8WYN3 585 aa13.12□□□□□ -0.31
PHTF1-211ENST00000486855 PRR29P0C7W0 189 aa13.11□□□□□ -0.31
PHTF1-211ENST00000486855 FARP1Q9Y4F1 1045 aaPredicted RBP12.98□□□□□ -0.33
PHTF1-211ENST00000486855 POTEIP0CG38 1075 aa12.96□□□□□ -0.33
PHTF1-211ENST00000486855 CD44P16070 742 aaKnown RBP12.95□□□□□ -0.34
PHTF1-211ENST00000486855 LHX8Q68G74 356 aa12.92□□□□□ -0.34
PHTF1-211ENST00000486855 CREBZFQ9NS37 354 aa12.85□□□□□ -0.35
PHTF1-211ENST00000486855 ZNF579Q8NAF0 562 aaKnown RBP12.77□□□□□ -0.37
PHTF1-211ENST00000486855 EHMT2Q96KQ7 1210 aa12.74□□□□□ -0.37
PHTF1-211ENST00000486855 CLCN6P51797 869 aa12.72□□□□□ -0.37
PHTF1-211ENST00000486855 ZRANB1Q9UGI0 708 aa12.72□□□□□ -0.37
PHTF1-211ENST00000486855 SPDYE4A6NLX3 237 aa12.71□□□□□ -0.37
PHTF1-211ENST00000486855 STAG3Q9UJ98 1225 aa12.69□□□□□ -0.38
PHTF1-211ENST00000486855 CCDC180Q9P1Z9 1646 aa12.68□□□□□ -0.38
PHTF1-211ENST00000486855 GALR2O43603 387 aaPredicted RBP12.67□□□□□ -0.38
PHTF1-211ENST00000486855 MNX1P50219 401 aaPredicted RBP12.64□□□□□ -0.39
PHTF1-211ENST00000486855 DCBLD2Q96PD2 775 aa12.63□□□□□ -0.39
PHTF1-211ENST00000486855 PHF12Q96QT6 1004 aa12.59□□□□□ -0.39
PHTF1-211ENST00000486855 POTEB2H3BUK9 544 aa12.54□□□□□ -0.4
PHTF1-211ENST00000486855 PELP1Q8IZL8 1130 aaKnown RBP12.49□□□□□ -0.41
PHTF1-211ENST00000486855 PROM2Q8N271 834 aa12.49□□□□□ -0.41
PHTF1-211ENST00000486855 OTUD5Q96G74 571 aa12.48□□□□□ -0.41
PHTF1-211ENST00000486855 PAK3O75914 559 aaPredicted RBP12.45□□□□□ -0.42
PHTF1-211ENST00000486855 NPM1P06748 294 aaKnown RBP eCLIP12.44□□□□□ -0.42
PHTF1-211ENST00000486855 MS4A3Q96HJ5 214 aa12.41□□□□□ -0.42
PHTF1-211ENST00000486855 ABCC9O60706 1549 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms