RNA–Protein interactions for RNA: ENST00000486536.6

USP41-204, Transcript of ubiquitin specific peptidase 41, humanhuman

TSL 2

Gene USP41, Length 1,188 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP41-204ENST00000486536 CHIC1Q5VXU3 224 aa19.87■□□□□ 0.77
USP41-204ENST00000486536 AEBP2Q6ZN18 517 aaPredicted RBP19.65■□□□□ 0.74
USP41-204ENST00000486536 PHF23Q9BUL5 403 aaPredicted RBP17.58■□□□□ 0.4
USP41-204ENST00000486536 SENP3Q9H4L4 574 aaPredicted RBP16.53■□□□□ 0.24
USP41-204ENST00000486536 PLPPR3Q6T4P5 718 aa16.45■□□□□ 0.22
USP41-204ENST00000486536 ADRA2BP18089 450 aa15.42■□□□□ 0.06
USP41-204ENST00000486536 PPP6R1Q9UPN7 881 aa15.29■□□□□ 0.04
USP41-204ENST00000486536 FOXD1Q16676 465 aa15.28■□□□□ 0.04
USP41-204ENST00000486536 KCNA4P22459 653 aa15.07■□□□□ 0
USP41-204ENST00000486536 EHMT2Q96KQ7 1210 aa14.9□□□□□ -0.02
USP41-204ENST00000486536 PPP4R3CPQ6ZMV5 832 aa14.61□□□□□ -0.07
USP41-204ENST00000486536 PIAS4Q8N2W9 510 aaPredicted RBP14.57□□□□□ -0.08
USP41-204ENST00000486536 SLC4A1APQ9BWU0 796 aaKnown RBP14.48□□□□□ -0.09
USP41-204ENST00000486536 NCBP3Q53F19 620 aaKnown RBP14.42□□□□□ -0.1
USP41-204ENST00000486536 CSRNP3Q8WYN3 585 aa14.41□□□□□ -0.1
USP41-204ENST00000486536 NPM3O75607 178 aaKnown RBP14.21□□□□□ -0.13
USP41-204ENST00000486536 CNKSR2Q8WXI2 1034 aa14.02□□□□□ -0.17
USP41-204ENST00000486536 SCAF1Q9H7N4 1312 aaKnown RBP13.99□□□□□ -0.17
USP41-204ENST00000486536 ZBTB22O15209 634 aa13.88□□□□□ -0.19
USP41-204ENST00000486536 MSH5O43196 834 aa13.78□□□□□ -0.2
USP41-204ENST00000486536 MAPK8IP2Q13387 824 aaPredicted RBP13.71□□□□□ -0.21
USP41-204ENST00000486536 DNAJC5BQ9UF47 199 aa13.66□□□□□ -0.22
USP41-204ENST00000486536 FOXD4L1Q9NU39 408 aa13.64□□□□□ -0.23
USP41-204ENST00000486536 RNF216Q9NWF9 866 aaPredicted RBP13.57□□□□□ -0.24
USP41-204ENST00000486536 NISCHQ9Y2I1 1504 aa13.42□□□□□ -0.26
USP41-204ENST00000486536 HOXD11P31277 338 aaPredicted RBP13.33□□□□□ -0.28
USP41-204ENST00000486536 DMRT2Q9Y5R5 561 aa13.31□□□□□ -0.28
USP41-204ENST00000486536 SLC4A2P04920 1241 aa13.25□□□□□ -0.29
USP41-204ENST00000486536 ATXN8OSP0DMR3 200 aa13.11□□□□□ -0.31
USP41-204ENST00000486536 MYCNP04198 464 aaPredicted RBP13.09□□□□□ -0.31
USP41-204ENST00000486536 RTN4Q9NQC3 1192 aaKnown RBP13.07□□□□□ -0.32
USP41-204ENST00000486536 AMER1Q5JTC6 1135 aaPredicted RBP13.05□□□□□ -0.32
USP41-204ENST00000486536 FKBP8Q14318 412 aa12.97□□□□□ -0.33
USP41-204ENST00000486536 SLC24A1O60721 1099 aa12.95□□□□□ -0.34
USP41-204ENST00000486536 DCAF8L1A6NGE4 600 aa12.73□□□□□ -0.37
USP41-204ENST00000486536 ATF5Q9Y2D1 282 aaPredicted RBP12.73□□□□□ -0.37
USP41-204ENST00000486536 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.72□□□□□ -0.37
USP41-204ENST00000486536 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.65□□□□□ -0.38
USP41-204ENST00000486536 HNRNPUL2Q1KMD3 747 aaKnown RBP12.65□□□□□ -0.38
USP41-204ENST00000486536 SAMD1Q6SPF0 538 aaPredicted RBP12.64□□□□□ -0.39
USP41-204ENST00000486536 U3KPZ7 1027 aaPredicted RBP12.57□□□□□ -0.4
USP41-204ENST00000486536 ZNF219Q9P2Y4 722 aaPredicted RBP12.44□□□□□ -0.42
USP41-204ENST00000486536 APLP2Q06481 763 aa12.34□□□□□ -0.43
USP41-204ENST00000486536 FBXO3Q9UK99 471 aa12.3□□□□□ -0.44
USP41-204ENST00000486536 SPDYE4A6NLX3 237 aa12.28□□□□□ -0.44
USP41-204ENST00000486536 MKRN4PQ13434 485 aaPredicted RBP12.2□□□□□ -0.46
USP41-204ENST00000486536 PROM2Q8N271 834 aa12.14□□□□□ -0.47
USP41-204ENST00000486536 FBLN2P98095 1184 aa12.12□□□□□ -0.47
USP41-204ENST00000486536 VASPP50552 380 aaPredicted RBP12.11□□□□□ -0.47
USP41-204ENST00000486536 TRHP20396 242 aaPredicted RBP12.07□□□□□ -0.48
USP41-204ENST00000486536 POLA2Q14181 598 aa12.05□□□□□ -0.48
USP41-204ENST00000486536 PLCB2Q00722 1185 aa12.04□□□□□ -0.48
USP41-204ENST00000486536 IFNLR1Q8IU57 520 aaPredicted RBP12.03□□□□□ -0.48
USP41-204ENST00000486536 SPINK5Q9NQ38 1064 aaPredicted RBP12.03□□□□□ -0.48
USP41-204ENST00000486536 CAPN15O75808 1086 aa11.95□□□□□ -0.5
USP41-204ENST00000486536 DCAF8L2P0C7V8 631 aa11.94□□□□□ -0.5
USP41-204ENST00000486536 PKD2Q13563 968 aa11.9□□□□□ -0.5
USP41-204ENST00000486536 HAP1P54257 671 aaPredicted RBP11.89□□□□□ -0.51
USP41-204ENST00000486536 RNF39Q9H2S5 420 aa11.89□□□□□ -0.51
USP41-204ENST00000486536 ZBTB12Q9Y330 459 aaPredicted RBP11.85□□□□□ -0.51
USP41-204ENST00000486536 C1QBPQ07021 282 aaKnown RBP11.79□□□□□ -0.52
USP41-204ENST00000486536 ABCB7O75027 752 aa11.78□□□□□ -0.52
USP41-204ENST00000486536 KLHL34Q8N239 644 aa11.78□□□□□ -0.52
USP41-204ENST00000486536 SPOCK2Q92563 424 aa11.76□□□□□ -0.53
USP41-204ENST00000486536 VSIG10Q8N0Z9 540 aa11.73□□□□□ -0.53
USP41-204ENST00000486536 CCDC180Q9P1Z9 1646 aa11.71□□□□□ -0.53
USP41-204ENST00000486536 ZNF692Q9BU19 519 aaPredicted RBP11.7□□□□□ -0.54
USP41-204ENST00000486536 STAG3Q9UJ98 1225 aa11.7□□□□□ -0.54
USP41-204ENST00000486536 ECM2O94769 699 aaPredicted RBP11.69□□□□□ -0.54
USP41-204ENST00000486536 BCANQ96GW7 911 aa11.69□□□□□ -0.54
USP41-204ENST00000486536 BBXQ8WY36 941 aaPredicted RBP11.68□□□□□ -0.54
USP41-204ENST00000486536 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.67□□□□□ -0.54
USP41-204ENST00000486536 PLCD3Q8N3E9 789 aa11.63□□□□□ -0.55
USP41-204ENST00000486536 NPM1P06748 294 aaKnown RBP eCLIP11.62□□□□□ -0.55
USP41-204ENST00000486536 SPDYE2BA6NHP3 402 aa11.6□□□□□ -0.55
USP41-204ENST00000486536 SPDYE6P0CI01 402 aa11.6□□□□□ -0.55
USP41-204ENST00000486536 SPDYE2Q495Y8 402 aa11.6□□□□□ -0.55
USP41-204ENST00000486536 PAXIP1Q6ZW49 1069 aaPredicted RBP11.59□□□□□ -0.55
USP41-204ENST00000486536 MIER1Q8N108 512 aa11.59□□□□□ -0.55
USP41-204ENST00000486536 SSUH2Q9Y2M2 353 aa11.58□□□□□ -0.56
USP41-204ENST00000486536 DSG3P32926 999 aa11.57□□□□□ -0.56
USP41-204ENST00000486536 CFAP44Q96MT7 982 aa11.57□□□□□ -0.56
USP41-204ENST00000486536 PRKCSHP14314 528 aaPredicted RBP11.56□□□□□ -0.56
USP41-204ENST00000486536 PABPN1Q86U42 306 aaKnown RBP eCLIP11.56□□□□□ -0.56
USP41-204ENST00000486536 OSCARQ8IYS5 282 aa11.56□□□□□ -0.56
USP41-204ENST00000486536 KDM2AQ9Y2K7 1162 aa11.56□□□□□ -0.56
USP41-204ENST00000486536 RGL2O15211 777 aa11.55□□□□□ -0.56
USP41-204ENST00000486536 TAOK2Q9UL54 1235 aa11.54□□□□□ -0.56
USP41-204ENST00000486536 ABCC9O60706 1549 aa11.51□□□□□ -0.57
USP41-204ENST00000486536 SPRYD3Q8NCJ5 442 aa11.49□□□□□ -0.57
USP41-204ENST00000486536 CIZ1Q9ULV3 898 aaPredicted RBP11.46□□□□□ -0.57
USP41-204ENST00000486536 PLEKHG5O94827 1062 aa11.43□□□□□ -0.58
USP41-204ENST00000486536 TSHZ2Q9NRE2 1034 aa11.43□□□□□ -0.58
USP41-204ENST00000486536 CHGAP10645 457 aaKnown RBP11.42□□□□□ -0.58
USP41-204ENST00000486536 ZBTB47Q9UFB7 747 aaPredicted RBP11.42□□□□□ -0.58
USP41-204ENST00000486536 TPRNQ4KMQ1 711 aa11.37□□□□□ -0.59
USP41-204ENST00000486536 TRIM41Q8WV44 630 aa11.34□□□□□ -0.59
USP41-204ENST00000486536 POTEDQ86YR6 584 aa11.31□□□□□ -0.6
USP41-204ENST00000486536 HS6ST3Q8IZP7 471 aa11.27□□□□□ -0.61
USP41-204ENST00000486536 ZCCHC6Q5VYS8 1495 aaKnown RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms