RNA–Protein interactions for RNA: ENST00000486235.5

TMEM39A-209, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-209ENST00000486235 AEBP2Q6ZN18 517 aaPredicted RBP29.43■■■□□ 2.3
TMEM39A-209ENST00000486235 CHIC1Q5VXU3 224 aa27.86■■■□□ 2.05
TMEM39A-209ENST00000486235 SENP3Q9H4L4 574 aaPredicted RBP25.03■■□□□ 1.6
TMEM39A-209ENST00000486235 PHF23Q9BUL5 403 aaPredicted RBP24.77■■□□□ 1.56
TMEM39A-209ENST00000486235 FOXD1Q16676 465 aa23.4■■□□□ 1.34
TMEM39A-209ENST00000486235 PLPPR3Q6T4P5 718 aa22.24■■□□□ 1.15
TMEM39A-209ENST00000486235 PPP6R1Q9UPN7 881 aa21.9■■□□□ 1.1
TMEM39A-209ENST00000486235 PIAS4Q8N2W9 510 aaPredicted RBP21.87■■□□□ 1.09
TMEM39A-209ENST00000486235 ADRA2BP18089 450 aa21.85■■□□□ 1.09
TMEM39A-209ENST00000486235 MSH5O43196 834 aa21.83■■□□□ 1.09
TMEM39A-209ENST00000486235 POTEDQ86YR6 584 aa21.43■■□□□ 1.02
TMEM39A-209ENST00000486235 MAPK8IP2Q13387 824 aaPredicted RBP20.1■□□□□ 0.81
TMEM39A-209ENST00000486235 SCAF1Q9H7N4 1312 aaKnown RBP19.88■□□□□ 0.77
TMEM39A-209ENST00000486235 DMRT2Q9Y5R5 561 aa19.85■□□□□ 0.77
TMEM39A-209ENST00000486235 PPP4R3CPQ6ZMV5 832 aa19.54■□□□□ 0.72
TMEM39A-209ENST00000486235 DCAF8L1A6NGE4 600 aa19.19■□□□□ 0.66
TMEM39A-209ENST00000486235 CNKSR2Q8WXI2 1034 aa19.13■□□□□ 0.65
TMEM39A-209ENST00000486235 HOXD11P31277 338 aaPredicted RBP19.08■□□□□ 0.64
TMEM39A-209ENST00000486235 RNF216Q9NWF9 866 aaPredicted RBP18.94■□□□□ 0.62
TMEM39A-209ENST00000486235 CACNB1Q02641 598 aaPredicted RBP18.85■□□□□ 0.61
TMEM39A-209ENST00000486235 NCBP3Q53F19 620 aaKnown RBP18.73■□□□□ 0.59
TMEM39A-209ENST00000486235 RNF39Q9H2S5 420 aa18.65■□□□□ 0.58
TMEM39A-209ENST00000486235 NPM3O75607 178 aaKnown RBP18.51■□□□□ 0.55
TMEM39A-209ENST00000486235 C1QBPQ07021 282 aaKnown RBP18.35■□□□□ 0.53
TMEM39A-209ENST00000486235 DNAJC5BQ9UF47 199 aa18.31■□□□□ 0.52
TMEM39A-209ENST00000486235 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.29■□□□□ 0.52
TMEM39A-209ENST00000486235 KCNA4P22459 653 aa18.17■□□□□ 0.5
TMEM39A-209ENST00000486235 U3KPZ7 1027 aaPredicted RBP17.87■□□□□ 0.45
TMEM39A-209ENST00000486235 SLC4A2P04920 1241 aa17.69■□□□□ 0.42
TMEM39A-209ENST00000486235 SPINK5Q9NQ38 1064 aaPredicted RBP17.67■□□□□ 0.42
TMEM39A-209ENST00000486235 CAPN15O75808 1086 aa17.64■□□□□ 0.41
TMEM39A-209ENST00000486235 DSG3P32926 999 aa17.48■□□□□ 0.39
TMEM39A-209ENST00000486235 TRHP20396 242 aaPredicted RBP17.37■□□□□ 0.37
TMEM39A-209ENST00000486235 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.27■□□□□ 0.36
TMEM39A-209ENST00000486235 APLP2Q06481 763 aa17.27■□□□□ 0.36
TMEM39A-209ENST00000486235 HNRNPUL2Q1KMD3 747 aaKnown RBP17.27■□□□□ 0.36
TMEM39A-209ENST00000486235 ABCB7O75027 752 aa17.26■□□□□ 0.35
TMEM39A-209ENST00000486235 ZNF219Q9P2Y4 722 aaPredicted RBP17.21■□□□□ 0.35
TMEM39A-209ENST00000486235 SAMD1Q6SPF0 538 aaPredicted RBP17.2■□□□□ 0.34
TMEM39A-209ENST00000486235 SLC4A1APQ9BWU0 796 aaKnown RBP17.13■□□□□ 0.33
TMEM39A-209ENST00000486235 MYCNP04198 464 aaPredicted RBP17.07■□□□□ 0.32
TMEM39A-209ENST00000486235 FOXD4L1Q9NU39 408 aa16.9■□□□□ 0.3
TMEM39A-209ENST00000486235 POLA2Q14181 598 aa16.87■□□□□ 0.29
TMEM39A-209ENST00000486235 POTEHQ6S545 545 aa16.78■□□□□ 0.28
TMEM39A-209ENST00000486235 ATF5Q9Y2D1 282 aaPredicted RBP16.78■□□□□ 0.28
TMEM39A-209ENST00000486235 ZBTB22O15209 634 aa16.7■□□□□ 0.26
TMEM39A-209ENST00000486235 RBM42Q9BTD8 480 aaKnown RBP16.62■□□□□ 0.25
TMEM39A-209ENST00000486235 ZBTB12Q9Y330 459 aaPredicted RBP16.41■□□□□ 0.22
TMEM39A-209ENST00000486235 CHRDL2Q6WN34 429 aa16.33■□□□□ 0.2
TMEM39A-209ENST00000486235 OSCARQ8IYS5 282 aa16.33■□□□□ 0.2
TMEM39A-209ENST00000486235 ATXN8OSP0DMR3 200 aa16.31■□□□□ 0.2
TMEM39A-209ENST00000486235 NISCHQ9Y2I1 1504 aa16.26■□□□□ 0.19
TMEM39A-209ENST00000486235 AKT1S1Q96B36 256 aa16.25■□□□□ 0.19
TMEM39A-209ENST00000486235 REM2Q8IYK8 340 aaPredicted RBP16.16■□□□□ 0.18
TMEM39A-209ENST00000486235 FBLN2P98095 1184 aa16.06■□□□□ 0.16
TMEM39A-209ENST00000486235 PITPNM1O00562 1244 aa15.99■□□□□ 0.15
TMEM39A-209ENST00000486235 MKRN4PQ13434 485 aaPredicted RBP15.97■□□□□ 0.15
TMEM39A-209ENST00000486235 PIP4P2Q8N4L2 257 aa15.95■□□□□ 0.14
TMEM39A-209ENST00000486235 SPDYE2BA6NHP3 402 aa15.92■□□□□ 0.14
TMEM39A-209ENST00000486235 SPDYE6P0CI01 402 aa15.92■□□□□ 0.14
TMEM39A-209ENST00000486235 SPDYE2Q495Y8 402 aa15.92■□□□□ 0.14
TMEM39A-209ENST00000486235 CSRNP3Q8WYN3 585 aa15.9■□□□□ 0.14
TMEM39A-209ENST00000486235 FXR2P51116 673 aaKnown RBP eCLIP15.81■□□□□ 0.12
TMEM39A-209ENST00000486235 ZNF692Q9BU19 519 aaPredicted RBP15.81■□□□□ 0.12
TMEM39A-209ENST00000486235 EHMT2Q96KQ7 1210 aa15.77■□□□□ 0.12
TMEM39A-209ENST00000486235 CLEC11AQ9Y240 323 aa15.76■□□□□ 0.11
TMEM39A-209ENST00000486235 HAX1O00165 279 aa15.72■□□□□ 0.11
TMEM39A-209ENST00000486235 SSUH2Q9Y2M2 353 aa15.71■□□□□ 0.11
TMEM39A-209ENST00000486235 SP7Q8TDD2 431 aaPredicted RBP15.7■□□□□ 0.1
TMEM39A-209ENST00000486235 SPDYE1Q8NFV5 336 aaPredicted RBP15.68■□□□□ 0.1
TMEM39A-209ENST00000486235 PRKAR2AP13861 404 aaKnown RBP15.59■□□□□ 0.09
TMEM39A-209ENST00000486235 PABPN1Q86U42 306 aaKnown RBP eCLIP15.58■□□□□ 0.08
TMEM39A-209ENST00000486235 EVX2Q03828 476 aa15.53■□□□□ 0.08
TMEM39A-209ENST00000486235 CHADLQ6NUI6 762 aa15.46■□□□□ 0.07
TMEM39A-209ENST00000486235 PRR29P0C7W0 189 aa15.44■□□□□ 0.06
TMEM39A-209ENST00000486235 C19orf67A6NJJ6 358 aa15.31■□□□□ 0.04
TMEM39A-209ENST00000486235 SPDYE4A6NLX3 237 aa15.21■□□□□ 0.03
TMEM39A-209ENST00000486235 FARP1Q9Y4F1 1045 aaPredicted RBP15.16■□□□□ 0.02
TMEM39A-209ENST00000486235 GABBR2O75899 941 aa15.13■□□□□ 0.01
TMEM39A-209ENST00000486235 CD44P16070 742 aaKnown RBP15.09■□□□□ 0.01
TMEM39A-209ENST00000486235 STAG3Q9UJ98 1225 aa15.06■□□□□ 0
TMEM39A-209ENST00000486235 CREBZFQ9NS37 354 aa15.04■□□□□ -0
TMEM39A-209ENST00000486235 ABCC9O60706 1549 aa14.93□□□□□ -0.02
TMEM39A-209ENST00000486235 ZRANB1Q9UGI0 708 aa14.9□□□□□ -0.02
TMEM39A-209ENST00000486235 POTEIP0CG38 1075 aa14.82□□□□□ -0.04
TMEM39A-209ENST00000486235 ZNF579Q8NAF0 562 aaKnown RBP14.79□□□□□ -0.04
TMEM39A-209ENST00000486235 LHX8Q68G74 356 aa14.76□□□□□ -0.05
TMEM39A-209ENST00000486235 MNX1P50219 401 aaPredicted RBP14.74□□□□□ -0.05
TMEM39A-209ENST00000486235 NPM1P06748 294 aaKnown RBP eCLIP14.73□□□□□ -0.05
TMEM39A-209ENST00000486235 CLCN6P51797 869 aa14.73□□□□□ -0.05
TMEM39A-209ENST00000486235 PROM2Q8N271 834 aa14.73□□□□□ -0.05
TMEM39A-209ENST00000486235 DCBLD2Q96PD2 775 aa14.73□□□□□ -0.05
TMEM39A-209ENST00000486235 PAK3O75914 559 aaPredicted RBP14.72□□□□□ -0.05
TMEM39A-209ENST00000486235 PHF12Q96QT6 1004 aa14.71□□□□□ -0.05
TMEM39A-209ENST00000486235 GALR2O43603 387 aaPredicted RBP14.7□□□□□ -0.06
TMEM39A-209ENST00000486235 CCDC180Q9P1Z9 1646 aa14.63□□□□□ -0.07
TMEM39A-209ENST00000486235 TSPYL2Q9H2G4 693 aaPredicted RBP14.57□□□□□ -0.08
TMEM39A-209ENST00000486235 MIER1Q8N108 512 aa14.55□□□□□ -0.08
TMEM39A-209ENST00000486235 MS4A3Q96HJ5 214 aa14.47□□□□□ -0.09
TMEM39A-209ENST00000486235 PLEKHG5O94827 1062 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms