RNA–Protein interactions for RNA: ENST00000478687.5

VRK2-209, Transcript of vaccinia related kinase 2, humanhuman

TSL 1 (best)

Gene VRK2, Length 1,021 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK2-209ENST00000478687 AEBP2Q6ZN18 517 aaPredicted RBP25.16■■□□□ 1.62
VRK2-209ENST00000478687 CHIC1Q5VXU3 224 aa23.46■■□□□ 1.35
VRK2-209ENST00000478687 SENP3Q9H4L4 574 aaPredicted RBP21.44■■□□□ 1.02
VRK2-209ENST00000478687 PHF23Q9BUL5 403 aaPredicted RBP21.11■□□□□ 0.97
VRK2-209ENST00000478687 FOXD1Q16676 465 aa20.07■□□□□ 0.8
VRK2-209ENST00000478687 POTEDQ86YR6 584 aa19.19■□□□□ 0.66
VRK2-209ENST00000478687 MSH5O43196 834 aa18.89■□□□□ 0.61
VRK2-209ENST00000478687 PIAS4Q8N2W9 510 aaPredicted RBP18.57■□□□□ 0.56
VRK2-209ENST00000478687 PLPPR3Q6T4P5 718 aa18.49■□□□□ 0.55
VRK2-209ENST00000478687 PPP6R1Q9UPN7 881 aa18.48■□□□□ 0.55
VRK2-209ENST00000478687 ADRA2BP18089 450 aa18.32■□□□□ 0.52
VRK2-209ENST00000478687 DMRT2Q9Y5R5 561 aa16.98■□□□□ 0.31
VRK2-209ENST00000478687 MAPK8IP2Q13387 824 aaPredicted RBP16.97■□□□□ 0.31
VRK2-209ENST00000478687 SCAF1Q9H7N4 1312 aaKnown RBP16.69■□□□□ 0.26
VRK2-209ENST00000478687 CACNB1Q02641 598 aaPredicted RBP16.39■□□□□ 0.21
VRK2-209ENST00000478687 HOXD11P31277 338 aaPredicted RBP16.22■□□□□ 0.19
VRK2-209ENST00000478687 PPP4R3CPQ6ZMV5 832 aa16.16■□□□□ 0.18
VRK2-209ENST00000478687 RNF39Q9H2S5 420 aa16.14■□□□□ 0.17
VRK2-209ENST00000478687 DCAF8L1A6NGE4 600 aa16.1■□□□□ 0.17
VRK2-209ENST00000478687 CNKSR2Q8WXI2 1034 aa15.95■□□□□ 0.14
VRK2-209ENST00000478687 RNF216Q9NWF9 866 aaPredicted RBP15.94■□□□□ 0.14
VRK2-209ENST00000478687 C1QBPQ07021 282 aaKnown RBP15.84■□□□□ 0.13
VRK2-209ENST00000478687 DNAJC5BQ9UF47 199 aa15.78■□□□□ 0.12
VRK2-209ENST00000478687 NCBP3Q53F19 620 aaKnown RBP15.34■□□□□ 0.05
VRK2-209ENST00000478687 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.29■□□□□ 0.04
VRK2-209ENST00000478687 NPM3O75607 178 aaKnown RBP15.23■□□□□ 0.03
VRK2-209ENST00000478687 U3KPZ7 1027 aaPredicted RBP15.06■□□□□ 0
VRK2-209ENST00000478687 DSG3P32926 999 aa14.96□□□□□ -0.01
VRK2-209ENST00000478687 SPINK5Q9NQ38 1064 aaPredicted RBP14.93□□□□□ -0.02
VRK2-209ENST00000478687 POTEHQ6S545 545 aa14.92□□□□□ -0.02
VRK2-209ENST00000478687 CAPN15O75808 1086 aa14.82□□□□□ -0.04
VRK2-209ENST00000478687 SLC4A2P04920 1241 aa14.69□□□□□ -0.06
VRK2-209ENST00000478687 KCNA4P22459 653 aa14.55□□□□□ -0.08
VRK2-209ENST00000478687 ZNF219Q9P2Y4 722 aaPredicted RBP14.49□□□□□ -0.09
VRK2-209ENST00000478687 TRHP20396 242 aaPredicted RBP14.48□□□□□ -0.09
VRK2-209ENST00000478687 ABCB7O75027 752 aa14.47□□□□□ -0.09
VRK2-209ENST00000478687 APLP2Q06481 763 aa14.46□□□□□ -0.09
VRK2-209ENST00000478687 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.38□□□□□ -0.11
VRK2-209ENST00000478687 HNRNPUL2Q1KMD3 747 aaKnown RBP14.38□□□□□ -0.11
VRK2-209ENST00000478687 SAMD1Q6SPF0 538 aaPredicted RBP14.3□□□□□ -0.12
VRK2-209ENST00000478687 RBM42Q9BTD8 480 aaKnown RBP14.21□□□□□ -0.13
VRK2-209ENST00000478687 CHRDL2Q6WN34 429 aa14.09□□□□□ -0.15
VRK2-209ENST00000478687 MYCNP04198 464 aaPredicted RBP14.05□□□□□ -0.16
VRK2-209ENST00000478687 POLA2Q14181 598 aa14.05□□□□□ -0.16
VRK2-209ENST00000478687 AKT1S1Q96B36 256 aa13.83□□□□□ -0.2
VRK2-209ENST00000478687 ATF5Q9Y2D1 282 aaPredicted RBP13.82□□□□□ -0.2
VRK2-209ENST00000478687 SP7Q8TDD2 431 aaPredicted RBP13.8□□□□□ -0.2
VRK2-209ENST00000478687 NISCHQ9Y2I1 1504 aa13.76□□□□□ -0.21
VRK2-209ENST00000478687 ZBTB12Q9Y330 459 aaPredicted RBP13.73□□□□□ -0.21
VRK2-209ENST00000478687 REM2Q8IYK8 340 aaPredicted RBP13.71□□□□□ -0.21
VRK2-209ENST00000478687 PIP4P2Q8N4L2 257 aa13.69□□□□□ -0.22
VRK2-209ENST00000478687 FOXD4L1Q9NU39 408 aa13.69□□□□□ -0.22
VRK2-209ENST00000478687 OSCARQ8IYS5 282 aa13.64□□□□□ -0.23
VRK2-209ENST00000478687 SLC4A1APQ9BWU0 796 aaKnown RBP13.59□□□□□ -0.23
VRK2-209ENST00000478687 PITPNM1O00562 1244 aa13.58□□□□□ -0.24
VRK2-209ENST00000478687 FXR2P51116 673 aaKnown RBP eCLIP13.58□□□□□ -0.24
VRK2-209ENST00000478687 HAX1O00165 279 aa13.44□□□□□ -0.26
VRK2-209ENST00000478687 ZBTB22O15209 634 aa13.44□□□□□ -0.26
VRK2-209ENST00000478687 EVX2Q03828 476 aa13.4□□□□□ -0.26
VRK2-209ENST00000478687 ATXN8OSP0DMR3 200 aa13.33□□□□□ -0.28
VRK2-209ENST00000478687 SPDYE2BA6NHP3 402 aa13.3□□□□□ -0.28
VRK2-209ENST00000478687 SPDYE6P0CI01 402 aa13.3□□□□□ -0.28
VRK2-209ENST00000478687 SPDYE2Q495Y8 402 aa13.3□□□□□ -0.28
VRK2-209ENST00000478687 MKRN4PQ13434 485 aaPredicted RBP13.18□□□□□ -0.3
VRK2-209ENST00000478687 PRKAR2AP13861 404 aaKnown RBP13.17□□□□□ -0.3
VRK2-209ENST00000478687 FBLN2P98095 1184 aa13.17□□□□□ -0.3
VRK2-209ENST00000478687 C19orf67A6NJJ6 358 aa13.16□□□□□ -0.3
VRK2-209ENST00000478687 SSUH2Q9Y2M2 353 aa13.16□□□□□ -0.3
VRK2-209ENST00000478687 SPDYE1Q8NFV5 336 aaPredicted RBP13.14□□□□□ -0.31
VRK2-209ENST00000478687 CLEC11AQ9Y240 323 aa13.06□□□□□ -0.32
VRK2-209ENST00000478687 GABBR2O75899 941 aa13.02□□□□□ -0.33
VRK2-209ENST00000478687 ZNF692Q9BU19 519 aaPredicted RBP13.02□□□□□ -0.33
VRK2-209ENST00000478687 CHADLQ6NUI6 762 aa12.94□□□□□ -0.34
VRK2-209ENST00000478687 LHX8Q68G74 356 aa12.91□□□□□ -0.34
VRK2-209ENST00000478687 PABPN1Q86U42 306 aaKnown RBP eCLIP12.83□□□□□ -0.36
VRK2-209ENST00000478687 PRR29P0C7W0 189 aa12.82□□□□□ -0.36
VRK2-209ENST00000478687 POTEIP0CG38 1075 aa12.82□□□□□ -0.36
VRK2-209ENST00000478687 FARP1Q9Y4F1 1045 aaPredicted RBP12.73□□□□□ -0.37
VRK2-209ENST00000478687 CD44P16070 742 aaKnown RBP12.72□□□□□ -0.37
VRK2-209ENST00000478687 ABCC9O60706 1549 aa12.67□□□□□ -0.38
VRK2-209ENST00000478687 CLCN6P51797 869 aa12.66□□□□□ -0.38
VRK2-209ENST00000478687 ZNF579Q8NAF0 562 aaKnown RBP12.58□□□□□ -0.4
VRK2-209ENST00000478687 CREBZFQ9NS37 354 aa12.51□□□□□ -0.41
VRK2-209ENST00000478687 DCBLD2Q96PD2 775 aa12.48□□□□□ -0.41
VRK2-209ENST00000478687 ZRANB1Q9UGI0 708 aa12.46□□□□□ -0.41
VRK2-209ENST00000478687 GALR2O43603 387 aaPredicted RBP12.44□□□□□ -0.42
VRK2-209ENST00000478687 CSRNP3Q8WYN3 585 aa12.41□□□□□ -0.42
VRK2-209ENST00000478687 CCDC180Q9P1Z9 1646 aa12.4□□□□□ -0.42
VRK2-209ENST00000478687 POTEB2H3BUK9 544 aa12.38□□□□□ -0.43
VRK2-209ENST00000478687 OTUD5Q96G74 571 aa12.38□□□□□ -0.43
VRK2-209ENST00000478687 STAG3Q9UJ98 1225 aa12.38□□□□□ -0.43
VRK2-209ENST00000478687 MNX1P50219 401 aaPredicted RBP12.32□□□□□ -0.44
VRK2-209ENST00000478687 PLSCR2Q9NRY7 297 aa12.3□□□□□ -0.44
VRK2-209ENST00000478687 PHF12Q96QT6 1004 aa12.29□□□□□ -0.44
VRK2-209ENST00000478687 PELP1Q8IZL8 1130 aaKnown RBP12.26□□□□□ -0.45
VRK2-209ENST00000478687 SPDYE4A6NLX3 237 aa12.24□□□□□ -0.45
VRK2-209ENST00000478687 PAK3O75914 559 aaPredicted RBP12.2□□□□□ -0.46
VRK2-209ENST00000478687 ASTLQ6HA08 431 aaPredicted RBP12.18□□□□□ -0.46
VRK2-209ENST00000478687 POTEMA6NI47 508 aa12.16□□□□□ -0.46
VRK2-209ENST00000478687 NPM1P06748 294 aaKnown RBP eCLIP12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms