RNA–Protein interactions for RNA: ENST00000478503.6

SH3D19-207, Transcript of SH3 domain containing 19, humanhuman

TSL 2

Gene SH3D19, Length 4,038 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3D19-207ENST00000478503 NISCHQ9Y2I1 1504 aa12.24□□□□□ -0.45
SH3D19-207ENST00000478503 SLC24A1O60721 1099 aa11.15□□□□□ -0.62
SH3D19-207ENST00000478503 SHROOM4Q9ULL8 1493 aa10.84□□□□□ -0.67
SH3D19-207ENST00000478503 DCAF8L2P0C7V8 631 aa10.72□□□□□ -0.69
SH3D19-207ENST00000478503 SUPT5HO00267 1087 aaKnown RBP10.62□□□□□ -0.71
SH3D19-207ENST00000478503 EHMT2Q96KQ7 1210 aa10.58□□□□□ -0.72
SH3D19-207ENST00000478503 ZCCHC6Q5VYS8 1495 aaKnown RBP10.29□□□□□ -0.76
SH3D19-207ENST00000478503 MYT1Q01538 1121 aa10.26□□□□□ -0.77
SH3D19-207ENST00000478503 CCDC180Q9P1Z9 1646 aa10.2□□□□□ -0.78
SH3D19-207ENST00000478503 PLPPR3Q6T4P5 718 aa10.13□□□□□ -0.79
SH3D19-207ENST00000478503 CHIC1Q5VXU3 224 aa10.11□□□□□ -0.79
SH3D19-207ENST00000478503 DAXXQ9UER7 740 aaPredicted RBP10.09□□□□□ -0.79
SH3D19-207ENST00000478503 PELP1Q8IZL8 1130 aaKnown RBP10.08□□□□□ -0.8
SH3D19-207ENST00000478503 ERICH6Q7L0X2 663 aa10.05□□□□□ -0.8
SH3D19-207ENST00000478503 MYO15BQ96JP2 1530 aa10.02□□□□□ -0.81
SH3D19-207ENST00000478503 RTN4Q9NQC3 1192 aaKnown RBP10.01□□□□□ -0.81
SH3D19-207ENST00000478503 PRKCSHP14314 528 aaPredicted RBP9.99□□□□□ -0.81
SH3D19-207ENST00000478503 LOC105371045A0A1W2PR82 267 aa9.98□□□□□ -0.81
SH3D19-207ENST00000478503 TTBK1Q5TCY1 1321 aaPredicted RBP9.97□□□□□ -0.81
SH3D19-207ENST00000478503 ABCC9O60706 1549 aa9.96□□□□□ -0.82
SH3D19-207ENST00000478503 PCGF6Q9BYE7 350 aa9.9□□□□□ -0.83
SH3D19-207ENST00000478503 FAM9AQ8IZU1 332 aaPredicted RBP9.89□□□□□ -0.83
SH3D19-207ENST00000478503 SCRIBQ14160 1630 aa9.88□□□□□ -0.83
SH3D19-207ENST00000478503 DCAF1Q9Y4B6 1507 aa9.83□□□□□ -0.84
SH3D19-207ENST00000478503 TRIM41Q8WV44 630 aa9.77□□□□□ -0.85
SH3D19-207ENST00000478503 RSF1Q96T23 1441 aaPredicted RBP9.76□□□□□ -0.85
SH3D19-207ENST00000478503 NCBP3Q53F19 620 aaKnown RBP9.73□□□□□ -0.85
SH3D19-207ENST00000478503 RANGAP1P46060 587 aaPredicted RBP9.72□□□□□ -0.85
SH3D19-207ENST00000478503 PPARGC1BQ86YN6 1023 aaKnown RBP9.72□□□□□ -0.85
SH3D19-207ENST00000478503 CECR2Q9BXF3 1484 aa9.71□□□□□ -0.85
SH3D19-207ENST00000478503 HRCP23327 699 aa9.67□□□□□ -0.86
SH3D19-207ENST00000478503 PABPN1Q86U42 306 aaKnown RBP eCLIP9.66□□□□□ -0.86
SH3D19-207ENST00000478503 APLP2Q06481 763 aa9.66□□□□□ -0.86
SH3D19-207ENST00000478503 RB1CC1Q8TDY2 1594 aa9.64□□□□□ -0.87
SH3D19-207ENST00000478503 EIF5BO60841 1220 aaKnown RBP9.61□□□□□ -0.87
SH3D19-207ENST00000478503 MROH2BQ7Z745 1585 aa9.6□□□□□ -0.87
SH3D19-207ENST00000478503 NACADO15069 1562 aa9.55□□□□□ -0.88
SH3D19-207ENST00000478503 TULP1O00294 542 aaPredicted RBP9.55□□□□□ -0.88
SH3D19-207ENST00000478503 AMER1Q5JTC6 1135 aaPredicted RBP9.54□□□□□ -0.88
SH3D19-207ENST00000478503 TIMELESSQ9UNS1 1208 aa9.53□□□□□ -0.88
SH3D19-207ENST00000478503 TRIM26Q12899 539 aaPredicted RBP9.53□□□□□ -0.88
SH3D19-207ENST00000478503 WIZO95785 1651 aa9.52□□□□□ -0.88
SH3D19-207ENST00000478503 KCNA4P22459 653 aa9.46□□□□□ -0.89
SH3D19-207ENST00000478503 PODXL2Q9NZ53 605 aa9.41□□□□□ -0.9
SH3D19-207ENST00000478503 ABCC8Q09428 1581 aa9.39□□□□□ -0.91
SH3D19-207ENST00000478503 ARXQ96QS3 562 aa9.38□□□□□ -0.91
SH3D19-207ENST00000478503 UBTFP17480 764 aaKnown RBP9.38□□□□□ -0.91
SH3D19-207ENST00000478503 KLHL34Q8N239 644 aa9.38□□□□□ -0.91
SH3D19-207ENST00000478503 BAZ1AQ9NRL2 1556 aaPredicted RBP9.36□□□□□ -0.91
SH3D19-207ENST00000478503 CCDC88BA6NC98 1476 aa9.36□□□□□ -0.91
SH3D19-207ENST00000478503 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.35□□□□□ -0.91
SH3D19-207ENST00000478503 SOGA1O94964 1423 aa9.33□□□□□ -0.92
SH3D19-207ENST00000478503 TPRNQ4KMQ1 711 aa9.33□□□□□ -0.92
SH3D19-207ENST00000478503 RUSC2Q8N2Y8 1516 aa9.3□□□□□ -0.92
SH3D19-207ENST00000478503 SMARCA4P51532 1647 aa9.3□□□□□ -0.92
SH3D19-207ENST00000478503 PLEKHG5O94827 1062 aa9.29□□□□□ -0.92
SH3D19-207ENST00000478503 HOMEZQ8IX15 550 aa9.29□□□□□ -0.92
SH3D19-207ENST00000478503 CSRNP3Q8WYN3 585 aa9.28□□□□□ -0.92
SH3D19-207ENST00000478503 CCER1Q8TC90 406 aaPredicted RBP9.27□□□□□ -0.93
SH3D19-207ENST00000478503 TOP2AP11388 1531 aaKnown RBP9.26□□□□□ -0.93
SH3D19-207ENST00000478503 UNC13AQ9UPW8 1703 aa9.26□□□□□ -0.93
SH3D19-207ENST00000478503 TAOK2Q9UL54 1235 aa9.25□□□□□ -0.93
SH3D19-207ENST00000478503 SMARCA2P51531 1590 aa9.25□□□□□ -0.93
SH3D19-207ENST00000478503 BICRAQ9NZM4 1560 aa9.23□□□□□ -0.93
SH3D19-207ENST00000478503 CEP162Q5TB80 1403 aa9.2□□□□□ -0.94
SH3D19-207ENST00000478503 ZEB1P37275 1124 aaPredicted RBP9.19□□□□□ -0.94
SH3D19-207ENST00000478503 HNRNPUL2Q1KMD3 747 aaKnown RBP9.19□□□□□ -0.94
SH3D19-207ENST00000478503 WRNQ14191 1432 aaPredicted RBP eCLIP9.18□□□□□ -0.94
SH3D19-207ENST00000478503 EIF4G1Q04637 1599 aaKnown RBP9.18□□□□□ -0.94
SH3D19-207ENST00000478503 C14orf37Q86TY3 774 aa9.16□□□□□ -0.94
SH3D19-207ENST00000478503 BAZ1BQ9UIG0 1483 aaKnown RBP9.15□□□□□ -0.94
SH3D19-207ENST00000478503 ATAD2BQ9ULI0 1458 aa9.15□□□□□ -0.94
SH3D19-207ENST00000478503 BCL11AQ9H165 835 aa9.15□□□□□ -0.94
SH3D19-207ENST00000478503 HAP1P54257 671 aaPredicted RBP9.13□□□□□ -0.95
SH3D19-207ENST00000478503 BCANQ96GW7 911 aa9.12□□□□□ -0.95
SH3D19-207ENST00000478503 TNIKQ9UKE5 1360 aa9.11□□□□□ -0.95
SH3D19-207ENST00000478503 NPM2Q86SE8 214 aaKnown RBP9.1□□□□□ -0.95
SH3D19-207ENST00000478503 SYNJ1O43426 1573 aa9.09□□□□□ -0.96
SH3D19-207ENST00000478503 AEBP2Q6ZN18 517 aaPredicted RBP9.07□□□□□ -0.96
SH3D19-207ENST00000478503 GOLGA3Q08378 1498 aa9.06□□□□□ -0.96
SH3D19-207ENST00000478503 RAPGEF2Q9Y4G8 1499 aa9.06□□□□□ -0.96
SH3D19-207ENST00000478503 CLIP1P30622 1438 aa9.05□□□□□ -0.96
SH3D19-207ENST00000478503 ITGAEP38570 1179 aa9.05□□□□□ -0.96
SH3D19-207ENST00000478503 GTF3C3Q9Y5Q9 886 aa9.02□□□□□ -0.97
SH3D19-207ENST00000478503 EEA1Q15075 1411 aa9.02□□□□□ -0.97
SH3D19-207ENST00000478503 ATP1B4Q9UN42 357 aaPredicted RBP9.02□□□□□ -0.97
SH3D19-207ENST00000478503 CEP164Q9UPV0 1460 aa9□□□□□ -0.97
SH3D19-207ENST00000478503 P3H3Q8IVL6 736 aa9□□□□□ -0.97
SH3D19-207ENST00000478503 DIEXFQ68CQ4 756 aaKnown RBP9□□□□□ -0.97
SH3D19-207ENST00000478503 KANK4Q5T7N3 995 aaPredicted RBP8.99□□□□□ -0.97
SH3D19-207ENST00000478503 YTHDC1Q96MU7 727 aaKnown RBP8.99□□□□□ -0.97
SH3D19-207ENST00000478503 PEG3Q9GZU2 1588 aa8.99□□□□□ -0.97
SH3D19-207ENST00000478503 SCAF1Q9H7N4 1312 aaKnown RBP8.96□□□□□ -0.98
SH3D19-207ENST00000478503 DNAJC5BQ9UF47 199 aa8.93□□□□□ -0.98
SH3D19-207ENST00000478503 VPS8Q8N3P4 1428 aa8.93□□□□□ -0.98
SH3D19-207ENST00000478503 NCAPD3P42695 1498 aa8.92□□□□□ -0.98
SH3D19-207ENST00000478503 NEUROD1Q13562 356 aa8.92□□□□□ -0.98
SH3D19-207ENST00000478503 CUX1P39880 1505 aa8.91□□□□□ -0.98
SH3D19-207ENST00000478503 SLC4A1APQ9BWU0 796 aaKnown RBP8.9□□□□□ -0.99
SH3D19-207ENST00000478503 KIF21BO75037 1637 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms