RNA–Protein interactions for RNA: ENST00000476641.2

CHD6-207, Transcript of chromodomain helicase DNA binding protein 6, humanhuman

TSL 2

Gene CHD6, Length 862 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD6-207ENST00000476641 AEBP2Q6ZN18 517 aaPredicted RBP33.77■■■■□ 3
CHD6-207ENST00000476641 CHIC1Q5VXU3 224 aa31.88■■■□□ 2.69
CHD6-207ENST00000476641 SENP3Q9H4L4 574 aaPredicted RBP28.83■■■□□ 2.21
CHD6-207ENST00000476641 PHF23Q9BUL5 403 aaPredicted RBP28.44■■■□□ 2.14
CHD6-207ENST00000476641 FOXD1Q16676 465 aa26.89■■□□□ 1.9
CHD6-207ENST00000476641 PLPPR3Q6T4P5 718 aa25.39■■□□□ 1.66
CHD6-207ENST00000476641 MSH5O43196 834 aa25.24■■□□□ 1.63
CHD6-207ENST00000476641 PIAS4Q8N2W9 510 aaPredicted RBP25.11■■□□□ 1.61
CHD6-207ENST00000476641 PPP6R1Q9UPN7 881 aa25.01■■□□□ 1.59
CHD6-207ENST00000476641 POTEDQ86YR6 584 aa24.96■■□□□ 1.59
CHD6-207ENST00000476641 ADRA2BP18089 450 aa24.93■■□□□ 1.58
CHD6-207ENST00000476641 MAPK8IP2Q13387 824 aaPredicted RBP22.96■■□□□ 1.27
CHD6-207ENST00000476641 DMRT2Q9Y5R5 561 aa22.82■■□□□ 1.24
CHD6-207ENST00000476641 SCAF1Q9H7N4 1312 aaKnown RBP22.8■■□□□ 1.24
CHD6-207ENST00000476641 PPP4R3CPQ6ZMV5 832 aa22.23■■□□□ 1.15
CHD6-207ENST00000476641 DCAF8L1A6NGE4 600 aa21.96■■□□□ 1.11
CHD6-207ENST00000476641 HOXD11P31277 338 aaPredicted RBP21.9■■□□□ 1.1
CHD6-207ENST00000476641 CNKSR2Q8WXI2 1034 aa21.85■■□□□ 1.09
CHD6-207ENST00000476641 CACNB1Q02641 598 aaPredicted RBP21.81■■□□□ 1.08
CHD6-207ENST00000476641 RNF216Q9NWF9 866 aaPredicted RBP21.69■■□□□ 1.06
CHD6-207ENST00000476641 RNF39Q9H2S5 420 aa21.52■■□□□ 1.04
CHD6-207ENST00000476641 NCBP3Q53F19 620 aaKnown RBP21.33■■□□□ 1.01
CHD6-207ENST00000476641 C1QBPQ07021 282 aaKnown RBP21.19■□□□□ 0.98
CHD6-207ENST00000476641 DNAJC5BQ9UF47 199 aa21.15■□□□□ 0.98
CHD6-207ENST00000476641 NPM3O75607 178 aaKnown RBP21.01■□□□□ 0.95
CHD6-207ENST00000476641 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.92■□□□□ 0.945e-9■■□□□ 13.7
CHD6-207ENST00000476641 KCNA4P22459 653 aa20.46■□□□□ 0.87
CHD6-207ENST00000476641 U3KPZ7 1027 aaPredicted RBP20.43■□□□□ 0.86
CHD6-207ENST00000476641 SPINK5Q9NQ38 1064 aaPredicted RBP20.21■□□□□ 0.83
CHD6-207ENST00000476641 CAPN15O75808 1086 aa20.2■□□□□ 0.82
CHD6-207ENST00000476641 SLC4A2P04920 1241 aa20.11■□□□□ 0.81
CHD6-207ENST00000476641 DSG3P32926 999 aa20.09■□□□□ 0.81
CHD6-207ENST00000476641 TRHP20396 242 aaPredicted RBP19.84■□□□□ 0.77
CHD6-207ENST00000476641 APLP2Q06481 763 aa19.84■□□□□ 0.77
CHD6-207ENST00000476641 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.78■□□□□ 0.76
CHD6-207ENST00000476641 HNRNPUL2Q1KMD3 747 aaKnown RBP19.78■□□□□ 0.76
CHD6-207ENST00000476641 ZNF219Q9P2Y4 722 aaPredicted RBP19.77■□□□□ 0.76
CHD6-207ENST00000476641 ABCB7O75027 752 aa19.72■□□□□ 0.75
CHD6-207ENST00000476641 SAMD1Q6SPF0 538 aaPredicted RBP19.67■□□□□ 0.74
CHD6-207ENST00000476641 POTEHQ6S545 545 aa19.54■□□□□ 0.72
CHD6-207ENST00000476641 NISCHQ9Y2I1 1504 aa19.45■□□□□ 0.7
CHD6-207ENST00000476641 MYCNP04198 464 aaPredicted RBP19.44■□□□□ 0.7
CHD6-207ENST00000476641 SLC4A1APQ9BWU0 796 aaKnown RBP19.28■□□□□ 0.68
CHD6-207ENST00000476641 POLA2Q14181 598 aa19.23■□□□□ 0.67
CHD6-207ENST00000476641 RBM42Q9BTD8 480 aaKnown RBP19.18■□□□□ 0.66
CHD6-207ENST00000476641 FOXD4L1Q9NU39 408 aa19.15■□□□□ 0.66
CHD6-207ENST00000476641 ATF5Q9Y2D1 282 aaPredicted RBP19.02■□□□□ 0.64
CHD6-207ENST00000476641 CHRDL2Q6WN34 429 aa18.85■□□□□ 0.61
CHD6-207ENST00000476641 ZBTB12Q9Y330 459 aaPredicted RBP18.82■□□□□ 0.6
CHD6-207ENST00000476641 ZBTB22O15209 634 aa18.8■□□□□ 0.6
CHD6-207ENST00000476641 AKT1S1Q96B36 256 aa18.7■□□□□ 0.58
CHD6-207ENST00000476641 OSCARQ8IYS5 282 aa18.65■□□□□ 0.58
CHD6-207ENST00000476641 ATXN8OSP0DMR3 200 aa18.55■□□□□ 0.56
CHD6-207ENST00000476641 REM2Q8IYK8 340 aaPredicted RBP18.53■□□□□ 0.56
CHD6-207ENST00000476641 PIP4P2Q8N4L2 257 aa18.35■□□□□ 0.53
CHD6-207ENST00000476641 PITPNM1O00562 1244 aa18.34■□□□□ 0.53
CHD6-207ENST00000476641 FBLN2P98095 1184 aa18.3■□□□□ 0.52
CHD6-207ENST00000476641 SPDYE2BA6NHP3 402 aa18.23■□□□□ 0.51
CHD6-207ENST00000476641 SPDYE6P0CI01 402 aa18.23■□□□□ 0.51
CHD6-207ENST00000476641 SPDYE2Q495Y8 402 aa18.23■□□□□ 0.51
CHD6-207ENST00000476641 SP7Q8TDD2 431 aaPredicted RBP18.22■□□□□ 0.51
CHD6-207ENST00000476641 FXR2P51116 673 aaKnown RBP eCLIP18.19■□□□□ 0.52e-6■□□□□ 10.9
CHD6-207ENST00000476641 MKRN4PQ13434 485 aaPredicted RBP18.12■□□□□ 0.49
CHD6-207ENST00000476641 HAX1O00165 279 aa18.1■□□□□ 0.49
CHD6-207ENST00000476641 ZNF692Q9BU19 519 aaPredicted RBP17.99■□□□□ 0.47
CHD6-207ENST00000476641 SPDYE1Q8NFV5 336 aaPredicted RBP17.97■□□□□ 0.47
CHD6-207ENST00000476641 CLEC11AQ9Y240 323 aa17.97■□□□□ 0.47
CHD6-207ENST00000476641 SSUH2Q9Y2M2 353 aa17.96■□□□□ 0.47
CHD6-207ENST00000476641 PRKAR2AP13861 404 aaKnown RBP17.87■□□□□ 0.45
CHD6-207ENST00000476641 EVX2Q03828 476 aa17.83■□□□□ 0.44
CHD6-207ENST00000476641 CSRNP3Q8WYN3 585 aa17.76■□□□□ 0.43
CHD6-207ENST00000476641 PABPN1Q86U42 306 aaKnown RBP eCLIP17.73■□□□□ 0.43
CHD6-207ENST00000476641 CHADLQ6NUI6 762 aa17.64■□□□□ 0.41
CHD6-207ENST00000476641 PRR29P0C7W0 189 aa17.63■□□□□ 0.41
CHD6-207ENST00000476641 C19orf67A6NJJ6 358 aa17.62■□□□□ 0.41
CHD6-207ENST00000476641 EHMT2Q96KQ7 1210 aa17.47■□□□□ 0.39
CHD6-207ENST00000476641 GABBR2O75899 941 aa17.42■□□□□ 0.38
CHD6-207ENST00000476641 FARP1Q9Y4F1 1045 aaPredicted RBP17.34■□□□□ 0.37
CHD6-207ENST00000476641 CD44P16070 742 aaKnown RBP17.3■□□□□ 0.36
CHD6-207ENST00000476641 ABCC9O60706 1549 aa17.25■□□□□ 0.35
CHD6-207ENST00000476641 CCDC180Q9P1Z9 1646 aa17.25■□□□□ 0.35
CHD6-207ENST00000476641 SPDYE4A6NLX3 237 aa17.19■□□□□ 0.34
CHD6-207ENST00000476641 STAG3Q9UJ98 1225 aa17.18■□□□□ 0.34
CHD6-207ENST00000476641 CREBZFQ9NS37 354 aa17.13■□□□□ 0.33
CHD6-207ENST00000476641 LHX8Q68G74 356 aa17.09■□□□□ 0.33
CHD6-207ENST00000476641 POTEIP0CG38 1075 aa17.05■□□□□ 0.32
CHD6-207ENST00000476641 CLCN6P51797 869 aa17.05■□□□□ 0.32
CHD6-207ENST00000476641 ZRANB1Q9UGI0 708 aa17.03■□□□□ 0.32
CHD6-207ENST00000476641 ZNF579Q8NAF0 562 aaKnown RBP17.01■□□□□ 0.31
CHD6-207ENST00000476641 DCBLD2Q96PD2 775 aa16.94■□□□□ 0.3
CHD6-207ENST00000476641 PAK3O75914 559 aaPredicted RBP16.85■□□□□ 0.29
CHD6-207ENST00000476641 GALR2O43603 387 aaPredicted RBP16.82■□□□□ 0.28
CHD6-207ENST00000476641 NPM1P06748 294 aaKnown RBP eCLIP16.82■□□□□ 0.28
CHD6-207ENST00000476641 MNX1P50219 401 aaPredicted RBP16.8■□□□□ 0.28
CHD6-207ENST00000476641 PHF12Q96QT6 1004 aa16.78■□□□□ 0.28
CHD6-207ENST00000476641 PROM2Q8N271 834 aa16.7■□□□□ 0.26
CHD6-207ENST00000476641 MS4A3Q96HJ5 214 aa16.55■□□□□ 0.24
CHD6-207ENST00000476641 TSPYL2Q9H2G4 693 aaPredicted RBP16.54■□□□□ 0.24
CHD6-207ENST00000476641 PELP1Q8IZL8 1130 aaKnown RBP16.51■□□□□ 0.23
CHD6-207ENST00000476641 POTEB2H3BUK9 544 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms