RNA–Protein interactions for RNA: ENST00000474157.1

GPNMB-209, Transcript of glycoprotein nmb, humanhuman

TSL 4

Gene GPNMB, Length 513 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-209ENST00000474157 AEBP2Q6ZN18 517 aaPredicted RBP23.67■■□□□ 1.38
GPNMB-209ENST00000474157 CHIC1Q5VXU3 224 aa23.5■■□□□ 1.35
GPNMB-209ENST00000474157 PHF23Q9BUL5 403 aaPredicted RBP20.72■□□□□ 0.91
GPNMB-209ENST00000474157 SENP3Q9H4L4 574 aaPredicted RBP20■□□□□ 0.79
GPNMB-209ENST00000474157 PLPPR3Q6T4P5 718 aa19.26■□□□□ 0.67
GPNMB-209ENST00000474157 FOXD1Q16676 465 aa18.52■□□□□ 0.56
GPNMB-209ENST00000474157 ADRA2BP18089 450 aa18.17■□□□□ 0.5
GPNMB-209ENST00000474157 PPP6R1Q9UPN7 881 aa18.15■□□□□ 0.5
GPNMB-209ENST00000474157 PIAS4Q8N2W9 510 aaPredicted RBP17.58■□□□□ 0.4
GPNMB-209ENST00000474157 KCNA4P22459 653 aa17.12■□□□□ 0.33
GPNMB-209ENST00000474157 PPP4R3CPQ6ZMV5 832 aa17.03■□□□□ 0.32
GPNMB-209ENST00000474157 MSH5O43196 834 aa16.9■□□□□ 0.3
GPNMB-209ENST00000474157 NCBP3Q53F19 620 aaKnown RBP16.69■□□□□ 0.26
GPNMB-209ENST00000474157 SCAF1Q9H7N4 1312 aaKnown RBP16.57■□□□□ 0.24
GPNMB-209ENST00000474157 NPM3O75607 178 aaKnown RBP16.46■□□□□ 0.23
GPNMB-209ENST00000474157 CNKSR2Q8WXI2 1034 aa16.45■□□□□ 0.22
GPNMB-209ENST00000474157 EHMT2Q96KQ7 1210 aa16.41■□□□□ 0.22
GPNMB-209ENST00000474157 SLC4A1APQ9BWU0 796 aaKnown RBP16.37■□□□□ 0.21
GPNMB-209ENST00000474157 MAPK8IP2Q13387 824 aaPredicted RBP16.36■□□□□ 0.21
GPNMB-209ENST00000474157 DMRT2Q9Y5R5 561 aa16.03■□□□□ 0.16
GPNMB-209ENST00000474157 RNF216Q9NWF9 866 aaPredicted RBP16.02■□□□□ 0.16
GPNMB-209ENST00000474157 CSRNP3Q8WYN3 585 aa15.99■□□□□ 0.15
GPNMB-209ENST00000474157 DNAJC5BQ9UF47 199 aa15.86■□□□□ 0.13
GPNMB-209ENST00000474157 HOXD11P31277 338 aaPredicted RBP15.85■□□□□ 0.13
GPNMB-209ENST00000474157 ZBTB22O15209 634 aa15.77■□□□□ 0.12
GPNMB-209ENST00000474157 FOXD4L1Q9NU39 408 aa15.63■□□□□ 0.09
GPNMB-209ENST00000474157 SLC4A2P04920 1241 aa15.45■□□□□ 0.06
GPNMB-209ENST00000474157 DCAF8L1A6NGE4 600 aa15.36■□□□□ 0.05
GPNMB-209ENST00000474157 MYCNP04198 464 aaPredicted RBP15.2■□□□□ 0.02
GPNMB-209ENST00000474157 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.13■□□□□ 0.01
GPNMB-209ENST00000474157 ATXN8OSP0DMR3 200 aa15.01□□□□□ -0.01
GPNMB-209ENST00000474157 U3KPZ7 1027 aaPredicted RBP14.94□□□□□ -0.02
GPNMB-209ENST00000474157 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.85□□□□□ -0.03
GPNMB-209ENST00000474157 HNRNPUL2Q1KMD3 747 aaKnown RBP14.85□□□□□ -0.03
GPNMB-209ENST00000474157 SAMD1Q6SPF0 538 aaPredicted RBP14.83□□□□□ -0.04
GPNMB-209ENST00000474157 ATF5Q9Y2D1 282 aaPredicted RBP14.78□□□□□ -0.04
GPNMB-209ENST00000474157 POTEDQ86YR6 584 aa14.69□□□□□ -0.06
GPNMB-209ENST00000474157 APLP2Q06481 763 aa14.6□□□□□ -0.07
GPNMB-209ENST00000474157 RNF39Q9H2S5 420 aa14.53□□□□□ -0.08
GPNMB-209ENST00000474157 ZNF219Q9P2Y4 722 aaPredicted RBP14.49□□□□□ -0.09
GPNMB-209ENST00000474157 FKBP8Q14318 412 aa14.46□□□□□ -0.09
GPNMB-209ENST00000474157 SPINK5Q9NQ38 1064 aaPredicted RBP14.41□□□□□ -0.1
GPNMB-209ENST00000474157 TRHP20396 242 aaPredicted RBP14.36□□□□□ -0.11
GPNMB-209ENST00000474157 C1QBPQ07021 282 aaKnown RBP14.36□□□□□ -0.11
GPNMB-209ENST00000474157 CAPN15O75808 1086 aa14.33□□□□□ -0.12
GPNMB-209ENST00000474157 POLA2Q14181 598 aa14.2□□□□□ -0.14
GPNMB-209ENST00000474157 MKRN4PQ13434 485 aaPredicted RBP14.15□□□□□ -0.14
GPNMB-209ENST00000474157 ABCB7O75027 752 aa14.11□□□□□ -0.15
GPNMB-209ENST00000474157 FBLN2P98095 1184 aa14.11□□□□□ -0.15
GPNMB-209ENST00000474157 SPDYE4A6NLX3 237 aa14.03□□□□□ -0.16
GPNMB-209ENST00000474157 ZBTB12Q9Y330 459 aaPredicted RBP13.98□□□□□ -0.17
GPNMB-209ENST00000474157 DSG3P32926 999 aa13.97□□□□□ -0.17
GPNMB-209ENST00000474157 RTN4Q9NQC3 1192 aaKnown RBP13.88□□□□□ -0.19
GPNMB-209ENST00000474157 NISCHQ9Y2I1 1504 aa13.87□□□□□ -0.19
GPNMB-209ENST00000474157 CACNB1Q02641 598 aaPredicted RBP13.87□□□□□ -0.19
GPNMB-209ENST00000474157 AMER1Q5JTC6 1135 aaPredicted RBP13.87□□□□□ -0.19
GPNMB-209ENST00000474157 PROM2Q8N271 834 aa13.84□□□□□ -0.19
GPNMB-209ENST00000474157 FBXO3Q9UK99 471 aa13.79□□□□□ -0.2
GPNMB-209ENST00000474157 OSCARQ8IYS5 282 aa13.73□□□□□ -0.21
GPNMB-209ENST00000474157 ZNF692Q9BU19 519 aaPredicted RBP13.67□□□□□ -0.22
GPNMB-209ENST00000474157 SPDYE2BA6NHP3 402 aa13.65□□□□□ -0.22
GPNMB-209ENST00000474157 SPDYE6P0CI01 402 aa13.65□□□□□ -0.22
GPNMB-209ENST00000474157 SPDYE2Q495Y8 402 aa13.65□□□□□ -0.22
GPNMB-209ENST00000474157 VASPP50552 380 aaPredicted RBP13.62□□□□□ -0.23
GPNMB-209ENST00000474157 SSUH2Q9Y2M2 353 aa13.59□□□□□ -0.23
GPNMB-209ENST00000474157 PABPN1Q86U42 306 aaKnown RBP eCLIP13.51□□□□□ -0.25
GPNMB-209ENST00000474157 IFNLR1Q8IU57 520 aaPredicted RBP13.46□□□□□ -0.25
GPNMB-209ENST00000474157 STAG3Q9UJ98 1225 aa13.4□□□□□ -0.26
GPNMB-209ENST00000474157 ABCC9O60706 1549 aa13.34□□□□□ -0.27
GPNMB-209ENST00000474157 PLCD3Q8N3E9 789 aa13.3□□□□□ -0.28
GPNMB-209ENST00000474157 KLHL34Q8N239 644 aa13.29□□□□□ -0.28
GPNMB-209ENST00000474157 RBM42Q9BTD8 480 aaKnown RBP13.29□□□□□ -0.28
GPNMB-209ENST00000474157 MIER1Q8N108 512 aa13.25□□□□□ -0.29
GPNMB-209ENST00000474157 MYT1Q01538 1121 aa13.24□□□□□ -0.29
GPNMB-209ENST00000474157 PELP1Q8IZL8 1130 aaKnown RBP13.23□□□□□ -0.29
GPNMB-209ENST00000474157 SPOCK2Q92563 424 aa13.22□□□□□ -0.29
GPNMB-209ENST00000474157 AKT1S1Q96B36 256 aa13.22□□□□□ -0.29
GPNMB-209ENST00000474157 SLC24A1O60721 1099 aa13.2□□□□□ -0.3
GPNMB-209ENST00000474157 PKD2Q13563 968 aa13.17□□□□□ -0.3
GPNMB-209ENST00000474157 PLEKHG5O94827 1062 aa13.15□□□□□ -0.3
GPNMB-209ENST00000474157 SPDYE1Q8NFV5 336 aaPredicted RBP13.15□□□□□ -0.3
GPNMB-209ENST00000474157 REM2Q8IYK8 340 aaPredicted RBP13.1□□□□□ -0.31
GPNMB-209ENST00000474157 CLEC11AQ9Y240 323 aa13.1□□□□□ -0.31
GPNMB-209ENST00000474157 ZBTB47Q9UFB7 747 aaPredicted RBP13.09□□□□□ -0.31
GPNMB-209ENST00000474157 DCAF8L2P0C7V8 631 aa13.07□□□□□ -0.32
GPNMB-209ENST00000474157 ECM2O94769 699 aaPredicted RBP13.02□□□□□ -0.33
GPNMB-209ENST00000474157 PRR29P0C7W0 189 aa13.02□□□□□ -0.33
GPNMB-209ENST00000474157 CIZ1Q9ULV3 898 aaPredicted RBP12.97□□□□□ -0.33
GPNMB-209ENST00000474157 PITPNM1O00562 1244 aa12.96□□□□□ -0.33
GPNMB-209ENST00000474157 CREBZFQ9NS37 354 aa12.95□□□□□ -0.34
GPNMB-209ENST00000474157 RGL2O15211 777 aa12.89□□□□□ -0.35
GPNMB-209ENST00000474157 NUBP1P53384 320 aa12.88□□□□□ -0.35
GPNMB-209ENST00000474157 MNX1P50219 401 aaPredicted RBP12.86□□□□□ -0.35
GPNMB-209ENST00000474157 PLCB2Q00722 1185 aa12.84□□□□□ -0.35
GPNMB-209ENST00000474157 TTBK1Q5TCY1 1321 aaPredicted RBP12.84□□□□□ -0.35
GPNMB-209ENST00000474157 GSE1Q14687 1217 aa12.83□□□□□ -0.36
GPNMB-209ENST00000474157 TRIM41Q8WV44 630 aa12.82□□□□□ -0.36
GPNMB-209ENST00000474157 DCAF8Q5TAQ9 597 aa12.8□□□□□ -0.36
GPNMB-209ENST00000474157 FAM212AQ96EL1 285 aa12.77□□□□□ -0.37
GPNMB-209ENST00000474157 NPM1P06748 294 aaKnown RBP eCLIP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 112.5 ms