RNA–Protein interactions for RNA: ENST00000471667.5

LRCH3-213, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 4

Gene LRCH3, Length 586 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-213ENST00000471667 AEBP2Q6ZN18 517 aaPredicted RBP17.65■□□□□ 0.42
LRCH3-213ENST00000471667 CHIC1Q5VXU3 224 aa16.78■□□□□ 0.28
LRCH3-213ENST00000471667 SENP3Q9H4L4 574 aaPredicted RBP15.05■□□□□ -0
LRCH3-213ENST00000471667 PHF23Q9BUL5 403 aaPredicted RBP14.85□□□□□ -0.03
LRCH3-213ENST00000471667 FOXD1Q16676 465 aa14.02□□□□□ -0.17
LRCH3-213ENST00000471667 PLPPR3Q6T4P5 718 aa13.42□□□□□ -0.26
LRCH3-213ENST00000471667 PPP6R1Q9UPN7 881 aa13.14□□□□□ -0.31
LRCH3-213ENST00000471667 PIAS4Q8N2W9 510 aaPredicted RBP13.12□□□□□ -0.31
LRCH3-213ENST00000471667 MSH5O43196 834 aa13.11□□□□□ -0.31
LRCH3-213ENST00000471667 ADRA2BP18089 450 aa13.1□□□□□ -0.31
LRCH3-213ENST00000471667 POTEDQ86YR6 584 aa12.75□□□□□ -0.37
LRCH3-213ENST00000471667 MAPK8IP2Q13387 824 aaPredicted RBP12.02□□□□□ -0.49
LRCH3-213ENST00000471667 SCAF1Q9H7N4 1312 aaKnown RBP11.98□□□□□ -0.49
LRCH3-213ENST00000471667 DMRT2Q9Y5R5 561 aa11.94□□□□□ -0.5
LRCH3-213ENST00000471667 PPP4R3CPQ6ZMV5 832 aa11.77□□□□□ -0.53
LRCH3-213ENST00000471667 CNKSR2Q8WXI2 1034 aa11.54□□□□□ -0.56
LRCH3-213ENST00000471667 HOXD11P31277 338 aaPredicted RBP11.5□□□□□ -0.57
LRCH3-213ENST00000471667 DCAF8L1A6NGE4 600 aa11.46□□□□□ -0.57
LRCH3-213ENST00000471667 RNF216Q9NWF9 866 aaPredicted RBP11.42□□□□□ -0.58
LRCH3-213ENST00000471667 NCBP3Q53F19 620 aaKnown RBP11.32□□□□□ -0.6
LRCH3-213ENST00000471667 CACNB1Q02641 598 aaPredicted RBP11.24□□□□□ -0.61
LRCH3-213ENST00000471667 RNF39Q9H2S5 420 aa11.2□□□□□ -0.62
LRCH3-213ENST00000471667 NPM3O75607 178 aaKnown RBP11.16□□□□□ -0.62
LRCH3-213ENST00000471667 DNAJC5BQ9UF47 199 aa11.09□□□□□ -0.63
LRCH3-213ENST00000471667 C1QBPQ07021 282 aaKnown RBP11.03□□□□□ -0.64
LRCH3-213ENST00000471667 KCNA4P22459 653 aa10.98□□□□□ -0.65
LRCH3-213ENST00000471667 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.97□□□□□ -0.651e-7■■□□□ 14.2
LRCH3-213ENST00000471667 U3KPZ7 1027 aaPredicted RBP10.73□□□□□ -0.69
LRCH3-213ENST00000471667 SLC4A2P04920 1241 aa10.65□□□□□ -0.7
LRCH3-213ENST00000471667 SPINK5Q9NQ38 1064 aaPredicted RBP10.58□□□□□ -0.72
LRCH3-213ENST00000471667 CAPN15O75808 1086 aa10.56□□□□□ -0.72
LRCH3-213ENST00000471667 DSG3P32926 999 aa10.49□□□□□ -0.73
LRCH3-213ENST00000471667 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.44□□□□□ -0.74
LRCH3-213ENST00000471667 APLP2Q06481 763 aa10.44□□□□□ -0.74
LRCH3-213ENST00000471667 HNRNPUL2Q1KMD3 747 aaKnown RBP10.44□□□□□ -0.74
LRCH3-213ENST00000471667 TRHP20396 242 aaPredicted RBP10.4□□□□□ -0.74
LRCH3-213ENST00000471667 SAMD1Q6SPF0 538 aaPredicted RBP10.39□□□□□ -0.75
LRCH3-213ENST00000471667 ZNF219Q9P2Y4 722 aaPredicted RBP10.38□□□□□ -0.75
LRCH3-213ENST00000471667 SLC4A1APQ9BWU0 796 aaKnown RBP10.37□□□□□ -0.75
LRCH3-213ENST00000471667 ABCB7O75027 752 aa10.33□□□□□ -0.76
LRCH3-213ENST00000471667 MYCNP04198 464 aaPredicted RBP10.32□□□□□ -0.76
LRCH3-213ENST00000471667 FOXD4L1Q9NU39 408 aa10.23□□□□□ -0.77
LRCH3-213ENST00000471667 POLA2Q14181 598 aa10.12□□□□□ -0.79
LRCH3-213ENST00000471667 ZBTB22O15209 634 aa10.09□□□□□ -0.79
LRCH3-213ENST00000471667 ATF5Q9Y2D1 282 aaPredicted RBP10.09□□□□□ -0.79
LRCH3-213ENST00000471667 RBM42Q9BTD8 480 aaKnown RBP10.01□□□□□ -0.81
LRCH3-213ENST00000471667 POTEHQ6S545 545 aa10□□□□□ -0.81
LRCH3-213ENST00000471667 ZBTB12Q9Y330 459 aaPredicted RBP9.92□□□□□ -0.82
LRCH3-213ENST00000471667 ATXN8OSP0DMR3 200 aa9.91□□□□□ -0.82
LRCH3-213ENST00000471667 OSCARQ8IYS5 282 aa9.81□□□□□ -0.84
LRCH3-213ENST00000471667 CHRDL2Q6WN34 429 aa9.78□□□□□ -0.84
LRCH3-213ENST00000471667 AKT1S1Q96B36 256 aa9.78□□□□□ -0.84
LRCH3-213ENST00000471667 FBLN2P98095 1184 aa9.7□□□□□ -0.86
LRCH3-213ENST00000471667 REM2Q8IYK8 340 aaPredicted RBP9.7□□□□□ -0.86
LRCH3-213ENST00000471667 CSRNP3Q8WYN3 585 aa9.64□□□□□ -0.87
LRCH3-213ENST00000471667 SPDYE2BA6NHP3 402 aa9.62□□□□□ -0.87
LRCH3-213ENST00000471667 SPDYE6P0CI01 402 aa9.62□□□□□ -0.87
LRCH3-213ENST00000471667 MKRN4PQ13434 485 aaPredicted RBP9.62□□□□□ -0.87
LRCH3-213ENST00000471667 SPDYE2Q495Y8 402 aa9.62□□□□□ -0.87
LRCH3-213ENST00000471667 PITPNM1O00562 1244 aa9.59□□□□□ -0.87
LRCH3-213ENST00000471667 PIP4P2Q8N4L2 257 aa9.55□□□□□ -0.88
LRCH3-213ENST00000471667 EHMT2Q96KQ7 1210 aa9.54□□□□□ -0.88
LRCH3-213ENST00000471667 FXR2P51116 673 aaKnown RBP eCLIP9.5□□□□□ -0.89
LRCH3-213ENST00000471667 ZNF692Q9BU19 519 aaPredicted RBP9.5□□□□□ -0.89
LRCH3-213ENST00000471667 SSUH2Q9Y2M2 353 aa9.49□□□□□ -0.89
LRCH3-213ENST00000471667 SPDYE1Q8NFV5 336 aaPredicted RBP9.45□□□□□ -0.9
LRCH3-213ENST00000471667 CLEC11AQ9Y240 323 aa9.42□□□□□ -0.9
LRCH3-213ENST00000471667 SP7Q8TDD2 431 aaPredicted RBP9.39□□□□□ -0.91
LRCH3-213ENST00000471667 HAX1O00165 279 aa9.38□□□□□ -0.91
LRCH3-213ENST00000471667 PABPN1Q86U42 306 aaKnown RBP eCLIP9.37□□□□□ -0.91
LRCH3-213ENST00000471667 PRKAR2AP13861 404 aaKnown RBP9.34□□□□□ -0.91
LRCH3-213ENST00000471667 ABCC9O60706 1549 aa9.34□□□□□ -0.91
LRCH3-213ENST00000471667 NISCHQ9Y2I1 1504 aa9.32□□□□□ -0.92
LRCH3-213ENST00000471667 PRR29P0C7W0 189 aa9.27□□□□□ -0.93
LRCH3-213ENST00000471667 EVX2Q03828 476 aa9.26□□□□□ -0.93
LRCH3-213ENST00000471667 CHADLQ6NUI6 762 aa9.24□□□□□ -0.93
LRCH3-213ENST00000471667 C19orf67A6NJJ6 358 aa9.19□□□□□ -0.94
LRCH3-213ENST00000471667 SPDYE4A6NLX3 237 aa9.18□□□□□ -0.94
LRCH3-213ENST00000471667 DNAJC5Q9H3Z4 198 aa9.11□□□□□ -0.95
LRCH3-213ENST00000471667 STAG3Q9UJ98 1225 aa9.11□□□□□ -0.95
LRCH3-213ENST00000471667 FARP1Q9Y4F1 1045 aaPredicted RBP9.11□□□□□ -0.95
LRCH3-213ENST00000471667 GABBR2O75899 941 aa9.05□□□□□ -0.96
LRCH3-213ENST00000471667 CD44P16070 742 aaKnown RBP9.05□□□□□ -0.96
LRCH3-213ENST00000471667 CREBZFQ9NS37 354 aa9.05□□□□□ -0.96
LRCH3-213ENST00000471667 PROM2Q8N271 834 aa8.95□□□□□ -0.98
LRCH3-213ENST00000471667 ZRANB1Q9UGI0 708 aa8.93□□□□□ -0.98
LRCH3-213ENST00000471667 CLCN6P51797 869 aa8.91□□□□□ -0.98
LRCH3-213ENST00000471667 ZNF579Q8NAF0 562 aaKnown RBP8.91□□□□□ -0.98
LRCH3-213ENST00000471667 MNX1P50219 401 aaPredicted RBP8.9□□□□□ -0.98
LRCH3-213ENST00000471667 NPM1P06748 294 aaKnown RBP eCLIP8.88□□□□□ -0.99
LRCH3-213ENST00000471667 PAK3O75914 559 aaPredicted RBP8.86□□□□□ -0.99
LRCH3-213ENST00000471667 POTEIP0CG38 1075 aa8.86□□□□□ -0.99
LRCH3-213ENST00000471667 DCBLD2Q96PD2 775 aa8.82□□□□□ -1
LRCH3-213ENST00000471667 PHF12Q96QT6 1004 aa8.82□□□□□ -1
LRCH3-213ENST00000471667 LHX8Q68G74 356 aa8.81□□□□□ -1
LRCH3-213ENST00000471667 GALR2O43603 387 aaPredicted RBP8.8□□□□□ -1
LRCH3-213ENST00000471667 MIER1Q8N108 512 aa8.76□□□□□ -1.01
LRCH3-213ENST00000471667 PLEKHG5O94827 1062 aa8.75□□□□□ -1.01
LRCH3-213ENST00000471667 FKBP8Q14318 412 aa8.75□□□□□ -1.01
LRCH3-213ENST00000471667 TSPYL2Q9H2G4 693 aaPredicted RBP8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms