RNA–Protein interactions for RNA: ENST00000465057.5

CMTM1-207, Transcript of CKLF like MARVEL transmembrane domain containing 1, humanhuman

TSL 1 (best)

Gene CMTM1, Length 797 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM1-207ENST00000465057 AEBP2Q6ZN18 517 aaPredicted RBP21.82■■□□□ 1.08
CMTM1-207ENST00000465057 CHIC1Q5VXU3 224 aa21.07■□□□□ 0.96
CMTM1-207ENST00000465057 SENP3Q9H4L4 574 aaPredicted RBP18.56■□□□□ 0.56
CMTM1-207ENST00000465057 PHF23Q9BUL5 403 aaPredicted RBP18.5■□□□□ 0.55
CMTM1-207ENST00000465057 FOXD1Q16676 465 aa17.25■□□□□ 0.35
CMTM1-207ENST00000465057 PLPPR3Q6T4P5 718 aa16.99■□□□□ 0.31
CMTM1-207ENST00000465057 PPP6R1Q9UPN7 881 aa16.41■□□□□ 0.22
CMTM1-207ENST00000465057 ADRA2BP18089 450 aa16.37■□□□□ 0.21
CMTM1-207ENST00000465057 PIAS4Q8N2W9 510 aaPredicted RBP16.19■□□□□ 0.18
CMTM1-207ENST00000465057 MSH5O43196 834 aa16.02■□□□□ 0.16
CMTM1-207ENST00000465057 POTEDQ86YR6 584 aa15.88■□□□□ 0.13
CMTM1-207ENST00000465057 SCAF1Q9H7N4 1312 aaKnown RBP14.99□□□□□ -0.01
CMTM1-207ENST00000465057 PPP4R3CPQ6ZMV5 832 aa14.95□□□□□ -0.02
CMTM1-207ENST00000465057 MAPK8IP2Q13387 824 aaPredicted RBP14.93□□□□□ -0.02
CMTM1-207ENST00000465057 DMRT2Q9Y5R5 561 aa14.78□□□□□ -0.04
CMTM1-207ENST00000465057 CNKSR2Q8WXI2 1034 aa14.59□□□□□ -0.07
CMTM1-207ENST00000465057 NCBP3Q53F19 620 aaKnown RBP14.48□□□□□ -0.09
CMTM1-207ENST00000465057 HOXD11P31277 338 aaPredicted RBP14.39□□□□□ -0.11
CMTM1-207ENST00000465057 RNF216Q9NWF9 866 aaPredicted RBP14.37□□□□□ -0.11
CMTM1-207ENST00000465057 KCNA4P22459 653 aa14.29□□□□□ -0.12
CMTM1-207ENST00000465057 NPM3O75607 178 aaKnown RBP14.26□□□□□ -0.13
CMTM1-207ENST00000465057 DCAF8L1A6NGE4 600 aa14.11□□□□□ -0.15
CMTM1-207ENST00000465057 DNAJC5BQ9UF47 199 aa13.93□□□□□ -0.18
CMTM1-207ENST00000465057 CACNB1Q02641 598 aaPredicted RBP13.73□□□□□ -0.21
CMTM1-207ENST00000465057 RNF39Q9H2S5 420 aa13.7□□□□□ -0.22
CMTM1-207ENST00000465057 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.68□□□□□ -0.22
CMTM1-207ENST00000465057 NISCHQ9Y2I1 1504 aa13.6□□□□□ -0.23
CMTM1-207ENST00000465057 SLC4A1APQ9BWU0 796 aaKnown RBP13.56□□□□□ -0.24
CMTM1-207ENST00000465057 SLC4A2P04920 1241 aa13.53□□□□□ -0.24
CMTM1-207ENST00000465057 C1QBPQ07021 282 aaKnown RBP13.52□□□□□ -0.25
CMTM1-207ENST00000465057 U3KPZ7 1027 aaPredicted RBP13.44□□□□□ -0.26
CMTM1-207ENST00000465057 FOXD4L1Q9NU39 408 aa13.23□□□□□ -0.29
CMTM1-207ENST00000465057 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.19□□□□□ -0.3
CMTM1-207ENST00000465057 MYCNP04198 464 aaPredicted RBP13.19□□□□□ -0.3
CMTM1-207ENST00000465057 HNRNPUL2Q1KMD3 747 aaKnown RBP13.19□□□□□ -0.3
CMTM1-207ENST00000465057 ZBTB22O15209 634 aa13.14□□□□□ -0.31
CMTM1-207ENST00000465057 SPINK5Q9NQ38 1064 aaPredicted RBP13.13□□□□□ -0.31
CMTM1-207ENST00000465057 SAMD1Q6SPF0 538 aaPredicted RBP13.12□□□□□ -0.31
CMTM1-207ENST00000465057 APLP2Q06481 763 aa13.11□□□□□ -0.31
CMTM1-207ENST00000465057 CAPN15O75808 1086 aa13.08□□□□□ -0.32
CMTM1-207ENST00000465057 ZNF219Q9P2Y4 722 aaPredicted RBP12.97□□□□□ -0.33
CMTM1-207ENST00000465057 TRHP20396 242 aaPredicted RBP12.96□□□□□ -0.33
CMTM1-207ENST00000465057 DSG3P32926 999 aa12.95□□□□□ -0.34
CMTM1-207ENST00000465057 CSRNP3Q8WYN3 585 aa12.88□□□□□ -0.35
CMTM1-207ENST00000465057 EHMT2Q96KQ7 1210 aa12.85□□□□□ -0.35
CMTM1-207ENST00000465057 ATF5Q9Y2D1 282 aaPredicted RBP12.85□□□□□ -0.35
CMTM1-207ENST00000465057 ATXN8OSP0DMR3 200 aa12.82□□□□□ -0.36
CMTM1-207ENST00000465057 ABCB7O75027 752 aa12.81□□□□□ -0.36
CMTM1-207ENST00000465057 POLA2Q14181 598 aa12.71□□□□□ -0.37
CMTM1-207ENST00000465057 ZBTB12Q9Y330 459 aaPredicted RBP12.48□□□□□ -0.41
CMTM1-207ENST00000465057 POTEHQ6S545 545 aa12.4□□□□□ -0.42
CMTM1-207ENST00000465057 RBM42Q9BTD8 480 aaKnown RBP12.34□□□□□ -0.43
CMTM1-207ENST00000465057 FBLN2P98095 1184 aa12.32□□□□□ -0.44
CMTM1-207ENST00000465057 MKRN4PQ13434 485 aaPredicted RBP12.28□□□□□ -0.44
CMTM1-207ENST00000465057 CCDC180Q9P1Z9 1646 aa12.26□□□□□ -0.45
CMTM1-207ENST00000465057 OSCARQ8IYS5 282 aa12.26□□□□□ -0.45
CMTM1-207ENST00000465057 ABCC9O60706 1549 aa12.22□□□□□ -0.45
CMTM1-207ENST00000465057 AKT1S1Q96B36 256 aa12.15□□□□□ -0.46
CMTM1-207ENST00000465057 SPDYE2BA6NHP3 402 aa12.13□□□□□ -0.47
CMTM1-207ENST00000465057 SPDYE6P0CI01 402 aa12.13□□□□□ -0.47
CMTM1-207ENST00000465057 SPDYE2Q495Y8 402 aa12.13□□□□□ -0.47
CMTM1-207ENST00000465057 ZNF692Q9BU19 519 aaPredicted RBP12.03□□□□□ -0.48
CMTM1-207ENST00000465057 REM2Q8IYK8 340 aaPredicted RBP12.02□□□□□ -0.49
CMTM1-207ENST00000465057 SSUH2Q9Y2M2 353 aa12□□□□□ -0.49
CMTM1-207ENST00000465057 CHRDL2Q6WN34 429 aa11.92□□□□□ -0.5
CMTM1-207ENST00000465057 PITPNM1O00562 1244 aa11.88□□□□□ -0.51
CMTM1-207ENST00000465057 SPDYE4A6NLX3 237 aa11.87□□□□□ -0.51
CMTM1-207ENST00000465057 PABPN1Q86U42 306 aaKnown RBP eCLIP11.86□□□□□ -0.51
CMTM1-207ENST00000465057 SPDYE1Q8NFV5 336 aaPredicted RBP11.83□□□□□ -0.52
CMTM1-207ENST00000465057 CLEC11AQ9Y240 323 aa11.77□□□□□ -0.53
CMTM1-207ENST00000465057 FXR2P51116 673 aaKnown RBP eCLIP11.73□□□□□ -0.53
CMTM1-207ENST00000465057 PIP4P2Q8N4L2 257 aa11.73□□□□□ -0.53
CMTM1-207ENST00000465057 PROM2Q8N271 834 aa11.66□□□□□ -0.54
CMTM1-207ENST00000465057 PRR29P0C7W0 189 aa11.65□□□□□ -0.54
CMTM1-207ENST00000465057 RB1CC1Q8TDY2 1594 aa11.63□□□□□ -0.55
CMTM1-207ENST00000465057 FKBP8Q14318 412 aa11.63□□□□□ -0.55
CMTM1-207ENST00000465057 STAG3Q9UJ98 1225 aa11.63□□□□□ -0.55
CMTM1-207ENST00000465057 PRKAR2AP13861 404 aaKnown RBP11.58□□□□□ -0.56
CMTM1-207ENST00000465057 NACADO15069 1562 aa11.53□□□□□ -0.56
CMTM1-207ENST00000465057 CHADLQ6NUI6 762 aa11.51□□□□□ -0.57
CMTM1-207ENST00000465057 UNC13AQ9UPW8 1703 aa11.51□□□□□ -0.57
CMTM1-207ENST00000465057 SP7Q8TDD2 431 aaPredicted RBP11.5□□□□□ -0.57
CMTM1-207ENST00000465057 DCAF8L2P0C7V8 631 aa11.44□□□□□ -0.58
CMTM1-207ENST00000465057 CREBZFQ9NS37 354 aa11.44□□□□□ -0.58
CMTM1-207ENST00000465057 HAX1O00165 279 aa11.4□□□□□ -0.58
CMTM1-207ENST00000465057 FARP1Q9Y4F1 1045 aaPredicted RBP11.39□□□□□ -0.59
CMTM1-207ENST00000465057 C19orf67A6NJJ6 358 aa11.33□□□□□ -0.6
CMTM1-207ENST00000465057 MYO15BQ96JP2 1530 aa11.33□□□□□ -0.6
CMTM1-207ENST00000465057 BICRAQ9NZM4 1560 aa11.32□□□□□ -0.6
CMTM1-207ENST00000465057 FBXO3Q9UK99 471 aa11.31□□□□□ -0.6
CMTM1-207ENST00000465057 MNX1P50219 401 aaPredicted RBP11.3□□□□□ -0.6
CMTM1-207ENST00000465057 EVX2Q03828 476 aa11.3□□□□□ -0.6
CMTM1-207ENST00000465057 ZCCHC6Q5VYS8 1495 aaKnown RBP11.3□□□□□ -0.6
CMTM1-207ENST00000465057 MIER1Q8N108 512 aa11.29□□□□□ -0.6
CMTM1-207ENST00000465057 PLEKHG5O94827 1062 aa11.25□□□□□ -0.61
CMTM1-207ENST00000465057 NPM1P06748 294 aaKnown RBP eCLIP11.25□□□□□ -0.61
CMTM1-207ENST00000465057 PLCD3Q8N3E9 789 aa11.23□□□□□ -0.61
CMTM1-207ENST00000465057 CD44P16070 742 aaKnown RBP11.22□□□□□ -0.61
CMTM1-207ENST00000465057 DCAF1Q9Y4B6 1507 aa11.21□□□□□ -0.61
CMTM1-207ENST00000465057 SCRIBQ14160 1630 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms