RNA–Protein interactions for RNA: ENST00000461194.5

NUP50-212, Transcript of nucleoporin 50, humanhuman

TSL 4

Gene NUP50, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-212ENST00000461194 AEBP2Q6ZN18 517 aaPredicted RBP24.4■■□□□ 1.5
NUP50-212ENST00000461194 CHIC1Q5VXU3 224 aa23.96■■□□□ 1.43
NUP50-212ENST00000461194 PHF23Q9BUL5 403 aaPredicted RBP21.12■□□□□ 0.97
NUP50-212ENST00000461194 SENP3Q9H4L4 574 aaPredicted RBP20.66■□□□□ 0.9
NUP50-212ENST00000461194 PLPPR3Q6T4P5 718 aa19.54■□□□□ 0.72
NUP50-212ENST00000461194 FOXD1Q16676 465 aa19.18■□□□□ 0.66
NUP50-212ENST00000461194 ADRA2BP18089 450 aa18.63■□□□□ 0.57
NUP50-212ENST00000461194 PPP6R1Q9UPN7 881 aa18.61■□□□□ 0.57
NUP50-212ENST00000461194 PIAS4Q8N2W9 510 aaPredicted RBP18.14■□□□□ 0.49
NUP50-212ENST00000461194 MSH5O43196 834 aa17.58■□□□□ 0.4
NUP50-212ENST00000461194 PPP4R3CPQ6ZMV5 832 aa17.27■□□□□ 0.36
NUP50-212ENST00000461194 KCNA4P22459 653 aa17.06■□□□□ 0.32
NUP50-212ENST00000461194 SCAF1Q9H7N4 1312 aaKnown RBP17■□□□□ 0.31
NUP50-212ENST00000461194 MAPK8IP2Q13387 824 aaPredicted RBP16.87■□□□□ 0.29
NUP50-212ENST00000461194 NCBP3Q53F19 620 aaKnown RBP16.86■□□□□ 0.29
NUP50-212ENST00000461194 NISCHQ9Y2I1 1504 aa16.76■□□□□ 0.27
NUP50-212ENST00000461194 CNKSR2Q8WXI2 1034 aa16.72■□□□□ 0.27
NUP50-212ENST00000461194 NPM3O75607 178 aaKnown RBP16.6■□□□□ 0.25
NUP50-212ENST00000461194 DMRT2Q9Y5R5 561 aa16.51■□□□□ 0.23
NUP50-212ENST00000461194 RNF216Q9NWF9 866 aaPredicted RBP16.34■□□□□ 0.21
NUP50-212ENST00000461194 POTEDQ86YR6 584 aa16.29■□□□□ 0.2
NUP50-212ENST00000461194 SLC4A1APQ9BWU0 796 aaKnown RBP16.28■□□□□ 0.2
NUP50-212ENST00000461194 HOXD11P31277 338 aaPredicted RBP16.22■□□□□ 0.19
NUP50-212ENST00000461194 EHMT2Q96KQ7 1210 aa16.05■□□□□ 0.16
NUP50-212ENST00000461194 DNAJC5BQ9UF47 199 aa15.98■□□□□ 0.15
NUP50-212ENST00000461194 DCAF8L1A6NGE4 600 aa15.9■□□□□ 0.14
NUP50-212ENST00000461194 CSRNP3Q8WYN3 585 aa15.74■□□□□ 0.11
NUP50-212ENST00000461194 ZBTB22O15209 634 aa15.69■□□□□ 0.1
NUP50-212ENST00000461194 SLC4A2P04920 1241 aa15.64■□□□□ 0.09
NUP50-212ENST00000461194 FOXD4L1Q9NU39 408 aa15.61■□□□□ 0.09
NUP50-212ENST00000461194 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.55■□□□□ 0.08
NUP50-212ENST00000461194 MYCNP04198 464 aaPredicted RBP15.31■□□□□ 0.04
NUP50-212ENST00000461194 U3KPZ7 1027 aaPredicted RBP15.25■□□□□ 0.03
NUP50-212ENST00000461194 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.11■□□□□ 0.01
NUP50-212ENST00000461194 HNRNPUL2Q1KMD3 747 aaKnown RBP15.11■□□□□ 0.01
NUP50-212ENST00000461194 RNF39Q9H2S5 420 aa15.1■□□□□ 0.01
NUP50-212ENST00000461194 SAMD1Q6SPF0 538 aaPredicted RBP15.07■□□□□ 0
NUP50-212ENST00000461194 ATXN8OSP0DMR3 200 aa15.04■□□□□ -0
NUP50-212ENST00000461194 ATF5Q9Y2D1 282 aaPredicted RBP14.94□□□□□ -0.02
NUP50-212ENST00000461194 C1QBPQ07021 282 aaKnown RBP14.92□□□□□ -0.02
NUP50-212ENST00000461194 APLP2Q06481 763 aa14.9□□□□□ -0.02
NUP50-212ENST00000461194 CCDC180Q9P1Z9 1646 aa14.88□□□□□ -0.03
NUP50-212ENST00000461194 SPINK5Q9NQ38 1064 aaPredicted RBP14.82□□□□□ -0.04
NUP50-212ENST00000461194 CAPN15O75808 1086 aa14.77□□□□□ -0.05
NUP50-212ENST00000461194 TRHP20396 242 aaPredicted RBP14.76□□□□□ -0.05
NUP50-212ENST00000461194 ZNF219Q9P2Y4 722 aaPredicted RBP14.7□□□□□ -0.06
NUP50-212ENST00000461194 ABCC9O60706 1549 aa14.67□□□□□ -0.06
NUP50-212ENST00000461194 CACNB1Q02641 598 aaPredicted RBP14.65□□□□□ -0.06
NUP50-212ENST00000461194 POLA2Q14181 598 aa14.54□□□□□ -0.08
NUP50-212ENST00000461194 ABCB7O75027 752 aa14.51□□□□□ -0.09
NUP50-212ENST00000461194 DSG3P32926 999 aa14.44□□□□□ -0.1
NUP50-212ENST00000461194 FBLN2P98095 1184 aa14.3□□□□□ -0.12
NUP50-212ENST00000461194 MKRN4PQ13434 485 aaPredicted RBP14.28□□□□□ -0.12
NUP50-212ENST00000461194 FKBP8Q14318 412 aa14.24□□□□□ -0.13
NUP50-212ENST00000461194 ZBTB12Q9Y330 459 aaPredicted RBP14.23□□□□□ -0.13
NUP50-212ENST00000461194 RB1CC1Q8TDY2 1594 aa14.06□□□□□ -0.16
NUP50-212ENST00000461194 SPDYE4A6NLX3 237 aa14.06□□□□□ -0.16
NUP50-212ENST00000461194 DCAF8L2P0C7V8 631 aa14.06□□□□□ -0.16
NUP50-212ENST00000461194 NACADO15069 1562 aa14.05□□□□□ -0.16
NUP50-212ENST00000461194 OSCARQ8IYS5 282 aa14.01□□□□□ -0.17
NUP50-212ENST00000461194 MYO15BQ96JP2 1530 aa13.97□□□□□ -0.17
NUP50-212ENST00000461194 ZCCHC6Q5VYS8 1495 aaKnown RBP13.95□□□□□ -0.18
NUP50-212ENST00000461194 ZNF692Q9BU19 519 aaPredicted RBP13.91□□□□□ -0.18
NUP50-212ENST00000461194 DCAF1Q9Y4B6 1507 aa13.87□□□□□ -0.19
NUP50-212ENST00000461194 SPDYE2BA6NHP3 402 aa13.87□□□□□ -0.19
NUP50-212ENST00000461194 SPDYE6P0CI01 402 aa13.87□□□□□ -0.19
NUP50-212ENST00000461194 SPDYE2Q495Y8 402 aa13.87□□□□□ -0.19
NUP50-212ENST00000461194 SSUH2Q9Y2M2 353 aa13.77□□□□□ -0.21
NUP50-212ENST00000461194 PROM2Q8N271 834 aa13.76□□□□□ -0.21
NUP50-212ENST00000461194 PABPN1Q86U42 306 aaKnown RBP eCLIP13.74□□□□□ -0.21
NUP50-212ENST00000461194 RBM42Q9BTD8 480 aaKnown RBP13.73□□□□□ -0.21
NUP50-212ENST00000461194 FBXO3Q9UK99 471 aa13.66□□□□□ -0.22
NUP50-212ENST00000461194 UNC13AQ9UPW8 1703 aa13.66□□□□□ -0.22
NUP50-212ENST00000461194 BICRAQ9NZM4 1560 aa13.64□□□□□ -0.23
NUP50-212ENST00000461194 AKT1S1Q96B36 256 aa13.61□□□□□ -0.23
NUP50-212ENST00000461194 SCRIBQ14160 1630 aa13.58□□□□□ -0.24
NUP50-212ENST00000461194 SHROOM4Q9ULL8 1493 aa13.53□□□□□ -0.24
NUP50-212ENST00000461194 REM2Q8IYK8 340 aaPredicted RBP13.52□□□□□ -0.25
NUP50-212ENST00000461194 STAG3Q9UJ98 1225 aa13.49□□□□□ -0.25
NUP50-212ENST00000461194 VASPP50552 380 aaPredicted RBP13.46□□□□□ -0.25
NUP50-212ENST00000461194 SPDYE1Q8NFV5 336 aaPredicted RBP13.45□□□□□ -0.26
NUP50-212ENST00000461194 CLEC11AQ9Y240 323 aa13.44□□□□□ -0.26
NUP50-212ENST00000461194 MIER1Q8N108 512 aa13.36□□□□□ -0.27
NUP50-212ENST00000461194 PITPNM1O00562 1244 aa13.34□□□□□ -0.27
NUP50-212ENST00000461194 PLCD3Q8N3E9 789 aa13.34□□□□□ -0.27
NUP50-212ENST00000461194 PRR29P0C7W0 189 aa13.32□□□□□ -0.28
NUP50-212ENST00000461194 IFNLR1Q8IU57 520 aaPredicted RBP13.32□□□□□ -0.28
NUP50-212ENST00000461194 EIF4G1Q04637 1599 aaKnown RBP13.3□□□□□ -0.28
NUP50-212ENST00000461194 KLHL34Q8N239 644 aa13.28□□□□□ -0.28
NUP50-212ENST00000461194 CC2D2AQ9P2K1 1620 aa13.24□□□□□ -0.29
NUP50-212ENST00000461194 PLEKHG5O94827 1062 aa13.24□□□□□ -0.29
NUP50-212ENST00000461194 RTN4Q9NQC3 1192 aaKnown RBP13.23□□□□□ -0.29
NUP50-212ENST00000461194 AMER1Q5JTC6 1135 aaPredicted RBP13.22□□□□□ -0.29
NUP50-212ENST00000461194 CECR2Q9BXF3 1484 aa13.21□□□□□ -0.3
NUP50-212ENST00000461194 CREBZFQ9NS37 354 aa13.16□□□□□ -0.3
NUP50-212ENST00000461194 SPOCK2Q92563 424 aa13.14□□□□□ -0.31
NUP50-212ENST00000461194 CHRDL2Q6WN34 429 aa13.12□□□□□ -0.31
NUP50-212ENST00000461194 ZBTB47Q9UFB7 747 aaPredicted RBP13.12□□□□□ -0.31
NUP50-212ENST00000461194 CHADLQ6NUI6 762 aa13.08□□□□□ -0.32
NUP50-212ENST00000461194 PRKAR2AP13861 404 aaKnown RBP13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms