RNA–Protein interactions for RNA: ENST00000448494.1

LINC00342-202, long intergenic non-protein coding RNA 342, humanhuman

TSL 2 BASIC

Gene LINC00342, Length 2,351 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00342-202ENST00000448494 PELP1Q8IZL8 1130 aaKnown RBP19.25■□□□□ 0.67
LINC00342-202ENST00000448494 MYT1Q01538 1121 aa18.88■□□□□ 0.61
LINC00342-202ENST00000448494 HRCP23327 699 aa18.31■□□□□ 0.52
LINC00342-202ENST00000448494 NISCHQ9Y2I1 1504 aa18.12■□□□□ 0.49
LINC00342-202ENST00000448494 TTBK1Q5TCY1 1321 aaPredicted RBP18.07■□□□□ 0.48
LINC00342-202ENST00000448494 SCAF1Q9H7N4 1312 aaKnown RBP17.71■□□□□ 0.43
LINC00342-202ENST00000448494 PPARGC1BQ86YN6 1023 aaKnown RBP17.6■□□□□ 0.41
LINC00342-202ENST00000448494 PCGF6Q9BYE7 350 aa17.29■□□□□ 0.36
LINC00342-202ENST00000448494 PRKCSHP14314 528 aaPredicted RBP17.23■□□□□ 0.35
LINC00342-202ENST00000448494 BCL11AQ9H165 835 aa17.18■□□□□ 0.34
LINC00342-202ENST00000448494 ACIN1Q9UKV3 1341 aaKnown RBP17.09■□□□□ 0.33
LINC00342-202ENST00000448494 ERICH6Q7L0X2 663 aa17.06■□□□□ 0.32
LINC00342-202ENST00000448494 CENPBP07199 599 aaPredicted RBP17.04■□□□□ 0.32
LINC00342-202ENST00000448494 ZEB1P37275 1124 aaPredicted RBP17.01■□□□□ 0.31
LINC00342-202ENST00000448494 FAM9AQ8IZU1 332 aaPredicted RBP16.96■□□□□ 0.31
LINC00342-202ENST00000448494 MYO15BQ96JP2 1530 aa16.95■□□□□ 0.3
LINC00342-202ENST00000448494 APLP2Q06481 763 aa16.91■□□□□ 0.3
LINC00342-202ENST00000448494 GTF3C3Q9Y5Q9 886 aa16.89■□□□□ 0.3
LINC00342-202ENST00000448494 NEUROD1Q13562 356 aa16.88■□□□□ 0.29
LINC00342-202ENST00000448494 DCAF1Q9Y4B6 1507 aa16.87■□□□□ 0.29
LINC00342-202ENST00000448494 CCDC180Q9P1Z9 1646 aa16.82■□□□□ 0.28
LINC00342-202ENST00000448494 TRIM26Q12899 539 aaPredicted RBP16.7■□□□□ 0.26
LINC00342-202ENST00000448494 ANP32EQ9BTT0 268 aa16.66■□□□□ 0.26
LINC00342-202ENST00000448494 ABCC9O60706 1549 aa16.53■□□□□ 0.24
LINC00342-202ENST00000448494 CHIC1Q5VXU3 224 aa16.43■□□□□ 0.22
LINC00342-202ENST00000448494 CSRNP3Q8WYN3 585 aa16.38■□□□□ 0.21
LINC00342-202ENST00000448494 DIEXFQ68CQ4 756 aaKnown RBP16.26■□□□□ 0.19
LINC00342-202ENST00000448494 SUPT5HO00267 1087 aaKnown RBP16.2■□□□□ 0.18
LINC00342-202ENST00000448494 CLSPNQ9HAW4 1339 aa16.19■□□□□ 0.18
LINC00342-202ENST00000448494 SLC24A1O60721 1099 aa16.19■□□□□ 0.18
LINC00342-202ENST00000448494 TSHZ2Q9NRE2 1034 aa16.11■□□□□ 0.17
LINC00342-202ENST00000448494 TRIM41Q8WV44 630 aa15.98■□□□□ 0.15
LINC00342-202ENST00000448494 LOC105371045A0A1W2PR82 267 aa15.98■□□□□ 0.15
LINC00342-202ENST00000448494 UBE2Q2Q8WVN8 375 aa15.97■□□□□ 0.15
LINC00342-202ENST00000448494 SUPT16HQ9Y5B9 1047 aaKnown RBP15.93■□□□□ 0.14
LINC00342-202ENST00000448494 ANO8Q9HCE9 1232 aaPredicted RBP15.92■□□□□ 0.14
LINC00342-202ENST00000448494 YTHDC1Q96MU7 727 aaKnown RBP15.9■□□□□ 0.14
LINC00342-202ENST00000448494 MYT1LQ9UL68 1186 aa15.89■□□□□ 0.13
LINC00342-202ENST00000448494 SHROOM4Q9ULL8 1493 aa15.86■□□□□ 0.13
LINC00342-202ENST00000448494 EIF5BO60841 1220 aaKnown RBP15.85■□□□□ 0.13
LINC00342-202ENST00000448494 DAXXQ9UER7 740 aaPredicted RBP15.85■□□□□ 0.13
LINC00342-202ENST00000448494 DNAJC5BQ9UF47 199 aa15.84■□□□□ 0.13
LINC00342-202ENST00000448494 ERICH6BQ5W0A0 696 aa15.8■□□□□ 0.12
LINC00342-202ENST00000448494 ZNF316A6NFI3 1004 aaPredicted RBP15.79■□□□□ 0.12
LINC00342-202ENST00000448494 CCER1Q8TC90 406 aaPredicted RBP15.78■□□□□ 0.12
LINC00342-202ENST00000448494 MIER1Q8N108 512 aa15.7■□□□□ 0.1
LINC00342-202ENST00000448494 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.69■□□□□ 0.1
LINC00342-202ENST00000448494 SALL2Q9Y467 1007 aaPredicted RBP15.65■□□□□ 0.1
LINC00342-202ENST00000448494 RBM19Q9Y4C8 960 aaKnown RBP15.64■□□□□ 0.09
LINC00342-202ENST00000448494 RB1CC1Q8TDY2 1594 aa15.6■□□□□ 0.09
LINC00342-202ENST00000448494 DEKP35659 375 aaKnown RBP15.59■□□□□ 0.09
LINC00342-202ENST00000448494 MSH5O43196 834 aa15.55■□□□□ 0.08
LINC00342-202ENST00000448494 FANCIQ9NVI1 1328 aa15.52■□□□□ 0.08
LINC00342-202ENST00000448494 PKNOX2Q96KN3 472 aa15.52■□□□□ 0.08
LINC00342-202ENST00000448494 CCDC136Q96JN2 1154 aa15.48■□□□□ 0.07
LINC00342-202ENST00000448494 NACADO15069 1562 aa15.41■□□□□ 0.06
LINC00342-202ENST00000448494 PLEKHG5O94827 1062 aa15.36■□□□□ 0.05
LINC00342-202ENST00000448494 PODXL2Q9NZ53 605 aa15.35■□□□□ 0.05
LINC00342-202ENST00000448494 UNC13AQ9UPW8 1703 aa15.29■□□□□ 0.04
LINC00342-202ENST00000448494 PABPN1Q86U42 306 aaKnown RBP eCLIP15.28■□□□□ 0.04
LINC00342-202ENST00000448494 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.28■□□□□ 0.04
LINC00342-202ENST00000448494 BCANQ96GW7 911 aa15.25■□□□□ 0.03
LINC00342-202ENST00000448494 FKBP8Q14318 412 aa15.25■□□□□ 0.03
LINC00342-202ENST00000448494 ZCCHC6Q5VYS8 1495 aaKnown RBP15.19■□□□□ 0.02
LINC00342-202ENST00000448494 IL27Q8NEV9 243 aa15.19■□□□□ 0.02
LINC00342-202ENST00000448494 BICRAQ9NZM4 1560 aa15.18■□□□□ 0.02
LINC00342-202ENST00000448494 NEFLP07196 543 aa15.18■□□□□ 0.02
LINC00342-202ENST00000448494 GLIPR1L2Q4G1C9 344 aa15.12■□□□□ 0.01
LINC00342-202ENST00000448494 CDK11AQ9UQ88 783 aaPredicted RBP15.1■□□□□ 0.01
LINC00342-202ENST00000448494 DCAF8L2P0C7V8 631 aa15.09■□□□□ 0.01
LINC00342-202ENST00000448494 RTN4Q9NQC3 1192 aaKnown RBP15.07■□□□□ 0
LINC00342-202ENST00000448494 NOP58Q9Y2X3 529 aaKnown RBP15.06■□□□□ 0
LINC00342-202ENST00000448494 C11orf95C9JLR9 678 aaPredicted RBP15.05■□□□□ 0
LINC00342-202ENST00000448494 RTL5Q5HYW3 569 aaPredicted RBP15.04■□□□□ -0
LINC00342-202ENST00000448494 ITGAEP38570 1179 aa15.04■□□□□ -0
LINC00342-202ENST00000448494 NBR1Q14596 966 aa15.02■□□□□ -0
LINC00342-202ENST00000448494 RSPH6AQ9H0K4 717 aa15□□□□□ -0.01
LINC00342-202ENST00000448494 WRNQ14191 1432 aaPredicted RBP eCLIP15□□□□□ -0.01
LINC00342-202ENST00000448494 ZMYND15Q9H091 742 aa14.98□□□□□ -0.01
LINC00342-202ENST00000448494 CC2D2AQ9P2K1 1620 aa14.94□□□□□ -0.02
LINC00342-202ENST00000448494 CECR2Q9BXF3 1484 aa14.94□□□□□ -0.02
LINC00342-202ENST00000448494 WASHC2AQ641Q2 1341 aa14.93□□□□□ -0.02
LINC00342-202ENST00000448494 WASHC2CQ9Y4E1 1318 aa14.91□□□□□ -0.02
LINC00342-202ENST00000448494 PAK3O75914 559 aaPredicted RBP14.87□□□□□ -0.03
LINC00342-202ENST00000448494 VSIG10Q8N0Z9 540 aa14.87□□□□□ -0.03
LINC00342-202ENST00000448494 USP35Q9P2H5 1018 aa14.85□□□□□ -0.03
LINC00342-202ENST00000448494 DNAJC5Q9H3Z4 198 aa14.83□□□□□ -0.04
LINC00342-202ENST00000448494 EIF4G1Q04637 1599 aaKnown RBP14.82□□□□□ -0.04
LINC00342-202ENST00000448494 KCNH8Q96L42 1107 aa14.8□□□□□ -0.04
LINC00342-202ENST00000448494 TIMELESSQ9UNS1 1208 aa14.8□□□□□ -0.04
LINC00342-202ENST00000448494 FGD1P98174 961 aa14.79□□□□□ -0.04
LINC00342-202ENST00000448494 PDE4CQ08493 712 aa14.78□□□□□ -0.04
LINC00342-202ENST00000448494 IPO9Q96P70 1041 aaKnown RBP14.78□□□□□ -0.04
LINC00342-202ENST00000448494 AAMPQ13685 434 aa14.74□□□□□ -0.05
LINC00342-202ENST00000448494 ZBTB47Q9UFB7 747 aaPredicted RBP14.74□□□□□ -0.05
LINC00342-202ENST00000448494 ANP32AP39687 249 aaKnown RBP14.73□□□□□ -0.05
LINC00342-202ENST00000448494 FAM43AQ8N2R8 423 aa14.73□□□□□ -0.05
LINC00342-202ENST00000448494 PPP4R2Q9NY27 417 aa14.72□□□□□ -0.05
LINC00342-202ENST00000448494 EHMT2Q96KQ7 1210 aa14.71□□□□□ -0.05
LINC00342-202ENST00000448494 BRPF3Q9ULD4 1205 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms