RNA–Protein interactions for RNA: ENST00000421212.1

LINC01249-202, Transcript of long intergenic non-protein coding RNA 1249, humanhuman

TSL 3

Gene LINC01249, Length 507 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01249-202ENST00000421212 AEBP2Q6ZN18 517 aaPredicted RBP17.66■□□□□ 0.42
LINC01249-202ENST00000421212 CHIC1Q5VXU3 224 aa16.69■□□□□ 0.26
LINC01249-202ENST00000421212 SENP3Q9H4L4 574 aaPredicted RBP15.36■□□□□ 0.05
LINC01249-202ENST00000421212 PHF23Q9BUL5 403 aaPredicted RBP14.98□□□□□ -0.01
LINC01249-202ENST00000421212 POTEDQ86YR6 584 aa14.61□□□□□ -0.07
LINC01249-202ENST00000421212 FOXD1Q16676 465 aa14.29□□□□□ -0.12
LINC01249-202ENST00000421212 MSH5O43196 834 aa13.79□□□□□ -0.2
LINC01249-202ENST00000421212 PIAS4Q8N2W9 510 aaPredicted RBP13.26□□□□□ -0.29
LINC01249-202ENST00000421212 PPP6R1Q9UPN7 881 aa12.73□□□□□ -0.37
LINC01249-202ENST00000421212 ADRA2BP18089 450 aa12.69□□□□□ -0.38
LINC01249-202ENST00000421212 PLPPR3Q6T4P5 718 aa12.64□□□□□ -0.39
LINC01249-202ENST00000421212 CACNB1Q02641 598 aaPredicted RBP12.28□□□□□ -0.44
LINC01249-202ENST00000421212 DMRT2Q9Y5R5 561 aa12□□□□□ -0.49
LINC01249-202ENST00000421212 MAPK8IP2Q13387 824 aaPredicted RBP11.85□□□□□ -0.51
LINC01249-202ENST00000421212 SCAF1Q9H7N4 1312 aaKnown RBP11.81□□□□□ -0.52
LINC01249-202ENST00000421212 DCAF8L1A6NGE4 600 aa11.63□□□□□ -0.55
LINC01249-202ENST00000421212 RNF39Q9H2S5 420 aa11.62□□□□□ -0.55
LINC01249-202ENST00000421212 C1QBPQ07021 282 aaKnown RBP11.48□□□□□ -0.57
LINC01249-202ENST00000421212 POTEHQ6S545 545 aa11.34□□□□□ -0.59
LINC01249-202ENST00000421212 HOXD11P31277 338 aaPredicted RBP11.27□□□□□ -0.61
LINC01249-202ENST00000421212 DNAJC5BQ9UF47 199 aa11.09□□□□□ -0.63
LINC01249-202ENST00000421212 RNF216Q9NWF9 866 aaPredicted RBP11.02□□□□□ -0.65
LINC01249-202ENST00000421212 CNKSR2Q8WXI2 1034 aa10.94□□□□□ -0.66
LINC01249-202ENST00000421212 PPP4R3CPQ6ZMV5 832 aa10.93□□□□□ -0.66
LINC01249-202ENST00000421212 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.81□□□□□ -0.68
LINC01249-202ENST00000421212 DSG3P32926 999 aa10.62□□□□□ -0.71
LINC01249-202ENST00000421212 CAPN15O75808 1086 aa10.58□□□□□ -0.72
LINC01249-202ENST00000421212 SPINK5Q9NQ38 1064 aaPredicted RBP10.46□□□□□ -0.73
LINC01249-202ENST00000421212 NCBP3Q53F19 620 aaKnown RBP10.4□□□□□ -0.74
LINC01249-202ENST00000421212 U3KPZ7 1027 aaPredicted RBP10.4□□□□□ -0.74
LINC01249-202ENST00000421212 SP7Q8TDD2 431 aaPredicted RBP10.3□□□□□ -0.76
LINC01249-202ENST00000421212 RBM42Q9BTD8 480 aaKnown RBP10.29□□□□□ -0.76
LINC01249-202ENST00000421212 CHRDL2Q6WN34 429 aa10.28□□□□□ -0.76
LINC01249-202ENST00000421212 APLP2Q06481 763 aa10.25□□□□□ -0.77
LINC01249-202ENST00000421212 ZNF219Q9P2Y4 722 aaPredicted RBP10.23□□□□□ -0.77
LINC01249-202ENST00000421212 ABCB7O75027 752 aa10.21□□□□□ -0.77
LINC01249-202ENST00000421212 TRHP20396 242 aaPredicted RBP10.21□□□□□ -0.77
LINC01249-202ENST00000421212 NPM3O75607 178 aaKnown RBP10.1□□□□□ -0.79
LINC01249-202ENST00000421212 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.02□□□□□ -0.81
LINC01249-202ENST00000421212 HNRNPUL2Q1KMD3 747 aaKnown RBP10.02□□□□□ -0.81
LINC01249-202ENST00000421212 NISCHQ9Y2I1 1504 aa9.93□□□□□ -0.82
LINC01249-202ENST00000421212 HAX1O00165 279 aa9.93□□□□□ -0.82
LINC01249-202ENST00000421212 SAMD1Q6SPF0 538 aaPredicted RBP9.89□□□□□ -0.83
LINC01249-202ENST00000421212 AKT1S1Q96B36 256 aa9.84□□□□□ -0.83
LINC01249-202ENST00000421212 PIP4P2Q8N4L2 257 aa9.83□□□□□ -0.84
LINC01249-202ENST00000421212 SLC4A2P04920 1241 aa9.8□□□□□ -0.84
LINC01249-202ENST00000421212 POLA2Q14181 598 aa9.74□□□□□ -0.85
LINC01249-202ENST00000421212 REM2Q8IYK8 340 aaPredicted RBP9.7□□□□□ -0.86
LINC01249-202ENST00000421212 PLSCR2Q9NRY7 297 aa9.7□□□□□ -0.86
LINC01249-202ENST00000421212 FXR2P51116 673 aaKnown RBP eCLIP9.65□□□□□ -0.86
LINC01249-202ENST00000421212 LHX8Q68G74 356 aa9.65□□□□□ -0.86
LINC01249-202ENST00000421212 ZBTB12Q9Y330 459 aaPredicted RBP9.61□□□□□ -0.87
LINC01249-202ENST00000421212 PITPNM1O00562 1244 aa9.59□□□□□ -0.87
LINC01249-202ENST00000421212 EVX2Q03828 476 aa9.58□□□□□ -0.88
LINC01249-202ENST00000421212 MYCNP04198 464 aaPredicted RBP9.45□□□□□ -0.9
LINC01249-202ENST00000421212 OSCARQ8IYS5 282 aa9.45□□□□□ -0.9
LINC01249-202ENST00000421212 GABBR2O75899 941 aa9.42□□□□□ -0.9
LINC01249-202ENST00000421212 C19orf67A6NJJ6 358 aa9.38□□□□□ -0.91
LINC01249-202ENST00000421212 PRKAR2AP13861 404 aaKnown RBP9.37□□□□□ -0.91
LINC01249-202ENST00000421212 ABCC9O60706 1549 aa9.26□□□□□ -0.93
LINC01249-202ENST00000421212 KCNA4P22459 653 aa9.23□□□□□ -0.93
LINC01249-202ENST00000421212 SPDYE1Q8NFV5 336 aaPredicted RBP9.23□□□□□ -0.93
LINC01249-202ENST00000421212 CLEC11AQ9Y240 323 aa9.23□□□□□ -0.93
LINC01249-202ENST00000421212 SPDYE2BA6NHP3 402 aa9.2□□□□□ -0.94
LINC01249-202ENST00000421212 SPDYE6P0CI01 402 aa9.2□□□□□ -0.94
LINC01249-202ENST00000421212 SPDYE2Q495Y8 402 aa9.2□□□□□ -0.94
LINC01249-202ENST00000421212 CLCN6P51797 869 aa9.17□□□□□ -0.94
LINC01249-202ENST00000421212 ATF5Q9Y2D1 282 aaPredicted RBP9.14□□□□□ -0.95
LINC01249-202ENST00000421212 POTEMA6NI47 508 aa9.13□□□□□ -0.95
LINC01249-202ENST00000421212 POTEIP0CG38 1075 aa9.13□□□□□ -0.95
LINC01249-202ENST00000421212 DCBLD2Q96PD2 775 aa9.11□□□□□ -0.95
LINC01249-202ENST00000421212 PCDH10Q9P2E7 1040 aa9.11□□□□□ -0.95
LINC01249-202ENST00000421212 POTEGQ6S5H5 508 aa9.08□□□□□ -0.96
LINC01249-202ENST00000421212 CHADLQ6NUI6 762 aa9.05□□□□□ -0.96
LINC01249-202ENST00000421212 CD44P16070 742 aaKnown RBP9.04□□□□□ -0.96
LINC01249-202ENST00000421212 FBLN2P98095 1184 aa9.04□□□□□ -0.96
LINC01249-202ENST00000421212 PRR29P0C7W0 189 aa8.99□□□□□ -0.97
LINC01249-202ENST00000421212 OTUD5Q96G74 571 aa8.99□□□□□ -0.97
LINC01249-202ENST00000421212 CCDC180Q9P1Z9 1646 aa8.98□□□□□ -0.97
LINC01249-202ENST00000421212 ZNF692Q9BU19 519 aaPredicted RBP8.95□□□□□ -0.98
LINC01249-202ENST00000421212 FOXD4L1Q9NU39 408 aa8.93□□□□□ -0.98
LINC01249-202ENST00000421212 SSUH2Q9Y2M2 353 aa8.92□□□□□ -0.98
LINC01249-202ENST00000421212 FARP1Q9Y4F1 1045 aaPredicted RBP8.89□□□□□ -0.99
LINC01249-202ENST00000421212 ZNF579Q8NAF0 562 aaKnown RBP8.86□□□□□ -0.99
LINC01249-202ENST00000421212 POTEB2H3BUK9 544 aa8.81□□□□□ -1
LINC01249-202ENST00000421212 ZRANB1Q9UGI0 708 aa8.79□□□□□ -1
LINC01249-202ENST00000421212 MAMSTRQ6ZN01 415 aa8.77□□□□□ -1.01
LINC01249-202ENST00000421212 PABPN1Q86U42 306 aaKnown RBP eCLIP8.77□□□□□ -1.01
LINC01249-202ENST00000421212 ATXN8OSP0DMR3 200 aa8.76□□□□□ -1.01
LINC01249-202ENST00000421212 GALR2O43603 387 aaPredicted RBP8.74□□□□□ -1.01
LINC01249-202ENST00000421212 FAM163AQ96GL9 167 aaPredicted RBP8.71□□□□□ -1.02
LINC01249-202ENST00000421212 MKRN4PQ13434 485 aaPredicted RBP8.69□□□□□ -1.02
LINC01249-202ENST00000421212 PAK3O75914 559 aaPredicted RBP8.67□□□□□ -1.02
LINC01249-202ENST00000421212 SCUBE2Q9NQ36 999 aa8.66□□□□□ -1.02
LINC01249-202ENST00000421212 RB1CC1Q8TDY2 1594 aa8.65□□□□□ -1.02
LINC01249-202ENST00000421212 SLC4A1APQ9BWU0 796 aaKnown RBP8.65□□□□□ -1.02
LINC01249-202ENST00000421212 METRNQ9UJH8 293 aa8.65□□□□□ -1.02
LINC01249-202ENST00000421212 LCE2DQ5TA82 110 aaPredicted RBP8.64□□□□□ -1.03
LINC01249-202ENST00000421212 C7P10643 843 aa8.63□□□□□ -1.03
LINC01249-202ENST00000421212 SLC39A7Q92504 469 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms