RNA–Protein interactions for RNA: ENST00000411796.6

CCDC196-203, Transcript of coiled-coil domain containing 196, humanhuman

TSL 1 (best)

Gene CCDC196, Length 1,132 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC196-203ENST00000411796 AEBP2Q6ZN18 517 aaPredicted RBP28.61■■■□□ 2.17
CCDC196-203ENST00000411796 CHIC1Q5VXU3 224 aa27.93■■■□□ 2.06
CCDC196-203ENST00000411796 PHF23Q9BUL5 403 aaPredicted RBP24.63■■□□□ 1.53
CCDC196-203ENST00000411796 SENP3Q9H4L4 574 aaPredicted RBP24.18■■□□□ 1.46
CCDC196-203ENST00000411796 PLPPR3Q6T4P5 718 aa22.67■■□□□ 1.22
CCDC196-203ENST00000411796 FOXD1Q16676 465 aa22.49■■□□□ 1.19
CCDC196-203ENST00000411796 PPP6R1Q9UPN7 881 aa21.74■■□□□ 1.07
CCDC196-203ENST00000411796 ADRA2BP18089 450 aa21.7■■□□□ 1.06
CCDC196-203ENST00000411796 PIAS4Q8N2W9 510 aaPredicted RBP21.19■□□□□ 0.98
CCDC196-203ENST00000411796 MSH5O43196 834 aa20.65■□□□□ 0.9
CCDC196-203ENST00000411796 PPP4R3CPQ6ZMV5 832 aa20.02■□□□□ 0.8
CCDC196-203ENST00000411796 NISCHQ9Y2I1 1504 aa19.86■□□□□ 0.77
CCDC196-203ENST00000411796 SCAF1Q9H7N4 1312 aaKnown RBP19.76■□□□□ 0.75
CCDC196-203ENST00000411796 MAPK8IP2Q13387 824 aaPredicted RBP19.7■□□□□ 0.74
CCDC196-203ENST00000411796 KCNA4P22459 653 aa19.63■□□□□ 0.73
CCDC196-203ENST00000411796 NCBP3Q53F19 620 aaKnown RBP19.46■□□□□ 0.71
CCDC196-203ENST00000411796 CNKSR2Q8WXI2 1034 aa19.42■□□□□ 0.7
CCDC196-203ENST00000411796 DMRT2Q9Y5R5 561 aa19.33■□□□□ 0.68
CCDC196-203ENST00000411796 NPM3O75607 178 aaKnown RBP19.23■□□□□ 0.67
CCDC196-203ENST00000411796 POTEDQ86YR6 584 aa19.17■□□□□ 0.66
CCDC196-203ENST00000411796 RNF216Q9NWF9 866 aaPredicted RBP19.03■□□□□ 0.64
CCDC196-203ENST00000411796 HOXD11P31277 338 aaPredicted RBP18.95■□□□□ 0.62
CCDC196-203ENST00000411796 SLC4A1APQ9BWU0 796 aaKnown RBP18.67■□□□□ 0.58
CCDC196-203ENST00000411796 DNAJC5BQ9UF47 199 aa18.62■□□□□ 0.57
CCDC196-203ENST00000411796 DCAF8L1A6NGE4 600 aa18.5■□□□□ 0.55
CCDC196-203ENST00000411796 EHMT2Q96KQ7 1210 aa18.21■□□□□ 0.51
CCDC196-203ENST00000411796 SLC4A2P04920 1241 aa18.17■□□□□ 0.5
CCDC196-203ENST00000411796 ZBTB22O15209 634 aa18.08■□□□□ 0.48
CCDC196-203ENST00000411796 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.06■□□□□ 0.48
CCDC196-203ENST00000411796 CSRNP3Q8WYN3 585 aa18.01■□□□□ 0.47
CCDC196-203ENST00000411796 FOXD4L1Q9NU39 408 aa18■□□□□ 0.47
CCDC196-203ENST00000411796 U3KPZ7 1027 aaPredicted RBP17.79■□□□□ 0.44
CCDC196-203ENST00000411796 RNF39Q9H2S5 420 aa17.74■□□□□ 0.43
CCDC196-203ENST00000411796 MYCNP04198 464 aaPredicted RBP17.71■□□□□ 0.43
CCDC196-203ENST00000411796 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.51■□□□□ 0.39
CCDC196-203ENST00000411796 C1QBPQ07021 282 aaKnown RBP17.51■□□□□ 0.39
CCDC196-203ENST00000411796 HNRNPUL2Q1KMD3 747 aaKnown RBP17.51■□□□□ 0.39
CCDC196-203ENST00000411796 CCDC180Q9P1Z9 1646 aa17.47■□□□□ 0.39
CCDC196-203ENST00000411796 SAMD1Q6SPF0 538 aaPredicted RBP17.47■□□□□ 0.39
CCDC196-203ENST00000411796 ATXN8OSP0DMR3 200 aa17.36■□□□□ 0.37
CCDC196-203ENST00000411796 ATF5Q9Y2D1 282 aaPredicted RBP17.33■□□□□ 0.36
CCDC196-203ENST00000411796 SPINK5Q9NQ38 1064 aaPredicted RBP17.3■□□□□ 0.36
CCDC196-203ENST00000411796 APLP2Q06481 763 aa17.28■□□□□ 0.36
CCDC196-203ENST00000411796 CACNB1Q02641 598 aaPredicted RBP17.25■□□□□ 0.35
CCDC196-203ENST00000411796 ABCC9O60706 1549 aa17.2■□□□□ 0.34
CCDC196-203ENST00000411796 CAPN15O75808 1086 aa17.19■□□□□ 0.34
CCDC196-203ENST00000411796 TRHP20396 242 aaPredicted RBP17.14■□□□□ 0.33
CCDC196-203ENST00000411796 ZNF219Q9P2Y4 722 aaPredicted RBP17.08■□□□□ 0.32
CCDC196-203ENST00000411796 DSG3P32926 999 aa16.92■□□□□ 0.3
CCDC196-203ENST00000411796 ABCB7O75027 752 aa16.9■□□□□ 0.3
CCDC196-203ENST00000411796 POLA2Q14181 598 aa16.89■□□□□ 0.29
CCDC196-203ENST00000411796 MYO15BQ96JP2 1530 aa16.63■□□□□ 0.25
CCDC196-203ENST00000411796 DCAF1Q9Y4B6 1507 aa16.61■□□□□ 0.25
CCDC196-203ENST00000411796 ZCCHC6Q5VYS8 1495 aaKnown RBP16.57■□□□□ 0.24
CCDC196-203ENST00000411796 MKRN4PQ13434 485 aaPredicted RBP16.56■□□□□ 0.24
CCDC196-203ENST00000411796 ZBTB12Q9Y330 459 aaPredicted RBP16.51■□□□□ 0.23
CCDC196-203ENST00000411796 FBLN2P98095 1184 aa16.5■□□□□ 0.23
CCDC196-203ENST00000411796 NACADO15069 1562 aa16.46■□□□□ 0.23
CCDC196-203ENST00000411796 DCAF8L2P0C7V8 631 aa16.34■□□□□ 0.21
CCDC196-203ENST00000411796 RB1CC1Q8TDY2 1594 aa16.31■□□□□ 0.2
CCDC196-203ENST00000411796 OSCARQ8IYS5 282 aa16.29■□□□□ 0.2
CCDC196-203ENST00000411796 FKBP8Q14318 412 aa16.25■□□□□ 0.19
CCDC196-203ENST00000411796 SPDYE4A6NLX3 237 aa16.17■□□□□ 0.18
CCDC196-203ENST00000411796 DNAJC5Q9H3Z4 198 aa16.16■□□□□ 0.18
CCDC196-203ENST00000411796 SPDYE2BA6NHP3 402 aa16.12■□□□□ 0.17
CCDC196-203ENST00000411796 SPDYE6P0CI01 402 aa16.12■□□□□ 0.17
CCDC196-203ENST00000411796 SPDYE2Q495Y8 402 aa16.12■□□□□ 0.17
CCDC196-203ENST00000411796 ZNF692Q9BU19 519 aaPredicted RBP16.1■□□□□ 0.17
CCDC196-203ENST00000411796 RBM42Q9BTD8 480 aaKnown RBP16.04■□□□□ 0.16
CCDC196-203ENST00000411796 SSUH2Q9Y2M2 353 aa16.01■□□□□ 0.15
CCDC196-203ENST00000411796 PABPN1Q86U42 306 aaKnown RBP eCLIP15.93■□□□□ 0.14
CCDC196-203ENST00000411796 PROM2Q8N271 834 aa15.91■□□□□ 0.14
CCDC196-203ENST00000411796 AKT1S1Q96B36 256 aa15.89■□□□□ 0.13
CCDC196-203ENST00000411796 SHROOM4Q9ULL8 1493 aa15.87■□□□□ 0.13
CCDC196-203ENST00000411796 REM2Q8IYK8 340 aaPredicted RBP15.78■□□□□ 0.12
CCDC196-203ENST00000411796 SCRIBQ14160 1630 aa15.74■□□□□ 0.11
CCDC196-203ENST00000411796 BICRAQ9NZM4 1560 aa15.7■□□□□ 0.1
CCDC196-203ENST00000411796 UNC13AQ9UPW8 1703 aa15.68■□□□□ 0.1
CCDC196-203ENST00000411796 SPDYE1Q8NFV5 336 aaPredicted RBP15.63■□□□□ 0.09
CCDC196-203ENST00000411796 FBXO3Q9UK99 471 aa15.61■□□□□ 0.09
CCDC196-203ENST00000411796 STAG3Q9UJ98 1225 aa15.59■□□□□ 0.09
CCDC196-203ENST00000411796 CLEC11AQ9Y240 323 aa15.59■□□□□ 0.09
CCDC196-203ENST00000411796 PITPNM1O00562 1244 aa15.58■□□□□ 0.08
CCDC196-203ENST00000411796 CECR2Q9BXF3 1484 aa15.56■□□□□ 0.08
CCDC196-203ENST00000411796 CC2D2AQ9P2K1 1620 aa15.49■□□□□ 0.07
CCDC196-203ENST00000411796 PRR29P0C7W0 189 aa15.45■□□□□ 0.06
CCDC196-203ENST00000411796 VASPP50552 380 aaPredicted RBP15.42■□□□□ 0.06
CCDC196-203ENST00000411796 CHRDL2Q6WN34 429 aa15.41■□□□□ 0.06
CCDC196-203ENST00000411796 BAZ1AQ9NRL2 1556 aaPredicted RBP15.38■□□□□ 0.05
CCDC196-203ENST00000411796 MIER1Q8N108 512 aa15.35■□□□□ 0.05
CCDC196-203ENST00000411796 PLCD3Q8N3E9 789 aa15.31■□□□□ 0.04
CCDC196-203ENST00000411796 FXR2P51116 673 aaKnown RBP eCLIP15.29■□□□□ 0.04
CCDC196-203ENST00000411796 CREBZFQ9NS37 354 aa15.29■□□□□ 0.04
CCDC196-203ENST00000411796 EIF4G1Q04637 1599 aaKnown RBP15.28■□□□□ 0.04
CCDC196-203ENST00000411796 IFNLR1Q8IU57 520 aaPredicted RBP15.26■□□□□ 0.03
CCDC196-203ENST00000411796 RSF1Q96T23 1441 aaPredicted RBP15.25■□□□□ 0.03
CCDC196-203ENST00000411796 PEG3Q9GZU2 1588 aa15.24■□□□□ 0.03
CCDC196-203ENST00000411796 CHADLQ6NUI6 762 aa15.24■□□□□ 0.03
CCDC196-203ENST00000411796 PIP4P2Q8N4L2 257 aa15.24■□□□□ 0.03
CCDC196-203ENST00000411796 SMARCA4P51532 1647 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms