RNA–Protein interactions for RNA: ENST00000365563.1

RNU6-54P-201, Transcript of RNA, U6 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU6-54P, Length 107 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-54P-201ENST00000365563 POTEDQ86YR6 584 aa9.33□□□□□ -0.92
RNU6-54P-201ENST00000365563 POTEHQ6S545 545 aa6.9□□□□□ -1.3
RNU6-54P-201ENST00000365563 PLSCR2Q9NRY7 297 aa6.75□□□□□ -1.33
RNU6-54P-201ENST00000365563 AEBP2Q6ZN18 517 aaPredicted RBP6.48□□□□□ -1.37
RNU6-54P-201ENST00000365563 CACNB1Q02641 598 aaPredicted RBP6.29□□□□□ -1.4
RNU6-54P-201ENST00000365563 CHIC1Q5VXU3 224 aa6.2□□□□□ -1.42
RNU6-54P-201ENST00000365563 SENP3Q9H4L4 574 aaPredicted RBP5.72□□□□□ -1.49
RNU6-54P-201ENST00000365563 MSH5O43196 834 aa5.7□□□□□ -1.5
RNU6-54P-201ENST00000365563 FOXD1Q16676 465 aa5.61□□□□□ -1.51
RNU6-54P-201ENST00000365563 PHF23Q9BUL5 403 aaPredicted RBP5.52□□□□□ -1.53
RNU6-54P-201ENST00000365563 SP7Q8TDD2 431 aaPredicted RBP5.41□□□□□ -1.54
RNU6-54P-201ENST00000365563 LHX8Q68G74 356 aa5.05□□□□□ -1.6
RNU6-54P-201ENST00000365563 PCDH10Q9P2E7 1040 aa4.96□□□□□ -1.62
RNU6-54P-201ENST00000365563 POTEMA6NI47 508 aa4.91□□□□□ -1.62
RNU6-54P-201ENST00000365563 PIAS4Q8N2W9 510 aaPredicted RBP4.91□□□□□ -1.62
RNU6-54P-201ENST00000365563 POTEGQ6S5H5 508 aa4.79□□□□□ -1.64
RNU6-54P-201ENST00000365563 ADRA2BP18089 450 aa4.6□□□□□ -1.67
RNU6-54P-201ENST00000365563 PLPPR3Q6T4P5 718 aa4.6□□□□□ -1.67
RNU6-54P-201ENST00000365563 PPP6R1Q9UPN7 881 aa4.6□□□□□ -1.67
RNU6-54P-201ENST00000365563 RNF39Q9H2S5 420 aa4.59□□□□□ -1.67
RNU6-54P-201ENST00000365563 LOC100996750A0A140TA64 210 aa4.46□□□□□ -1.7
RNU6-54P-201ENST00000365563 KRTAP4-6Q9BYQ5 205 aa4.46□□□□□ -1.7
RNU6-54P-201ENST00000365563 C1QBPQ07021 282 aaKnown RBP4.44□□□□□ -1.7
RNU6-54P-201ENST00000365563 DMRT2Q9Y5R5 561 aa4.44□□□□□ -1.7
RNU6-54P-201ENST00000365563 SCAF1Q9H7N4 1312 aaKnown RBP4.36□□□□□ -1.71
RNU6-54P-201ENST00000365563 DCAF8L1A6NGE4 600 aa4.31□□□□□ -1.72
RNU6-54P-201ENST00000365563 HAX1O00165 279 aa4.31□□□□□ -1.72
RNU6-54P-201ENST00000365563 MAPK8IP2Q13387 824 aaPredicted RBP4.31□□□□□ -1.72
RNU6-54P-201ENST00000365563 CHRDL2Q6WN34 429 aa4.3□□□□□ -1.72
RNU6-54P-201ENST00000365563 MMRN1Q13201 1228 aa4.21□□□□□ -1.74
RNU6-54P-201ENST00000365563 XP32Q5T750 250 aa4.2□□□□□ -1.74
RNU6-54P-201ENST00000365563 CDAN1Q8IWY9 1227 aa4.14□□□□□ -1.75
RNU6-54P-201ENST00000365563 HOXD11P31277 338 aaPredicted RBP4.13□□□□□ -1.75
RNU6-54P-201ENST00000365563 DNAJC5BQ9UF47 199 aa4.12□□□□□ -1.75
RNU6-54P-201ENST00000365563 KRTAP17-1Q9BYP8 105 aa4.06□□□□□ -1.76
RNU6-54P-201ENST00000365563 RNF216Q9NWF9 866 aaPredicted RBP4.03□□□□□ -1.76
RNU6-54P-201ENST00000365563 CNKSR2Q8WXI2 1034 aa3.98□□□□□ -1.77
RNU6-54P-201ENST00000365563 GRWD1Q9BQ67 446 aaKnown RBP eCLIP3.98□□□□□ -1.77
RNU6-54P-201ENST00000365563 EVX2Q03828 476 aa3.97□□□□□ -1.77
RNU6-54P-201ENST00000365563 OTUD5Q96G74 571 aa3.97□□□□□ -1.77
RNU6-54P-201ENST00000365563 SPNS2Q8IVW8 549 aa3.95□□□□□ -1.78
RNU6-54P-201ENST00000365563 KRTAP9-8Q9BYQ0 159 aa3.94□□□□□ -1.78
RNU6-54P-201ENST00000365563 PPP4R3CPQ6ZMV5 832 aa3.93□□□□□ -1.78
RNU6-54P-201ENST00000365563 DSG3P32926 999 aa3.92□□□□□ -1.78
RNU6-54P-201ENST00000365563 CAPN15O75808 1086 aa3.91□□□□□ -1.78
RNU6-54P-201ENST00000365563 RBM42Q9BTD8 480 aaKnown RBP3.86□□□□□ -1.79
RNU6-54P-201ENST00000365563 LCE2DQ5TA82 110 aaPredicted RBP3.85□□□□□ -1.79
RNU6-54P-201ENST00000365563 KRTAP5-3Q6L8H2 238 aa3.83□□□□□ -1.8
RNU6-54P-201ENST00000365563 APLP2Q06481 763 aa3.82□□□□□ -1.8
RNU6-54P-201ENST00000365563 SPINK5Q9NQ38 1064 aaPredicted RBP3.82□□□□□ -1.8
RNU6-54P-201ENST00000365563 GABBR2O75899 941 aa3.81□□□□□ -1.8
RNU6-54P-201ENST00000365563 KRTAP1-3Q8IUG1 177 aa3.8□□□□□ -1.8
RNU6-54P-201ENST00000365563 U3KPZ7 1027 aaPredicted RBP3.8□□□□□ -1.8
RNU6-54P-201ENST00000365563 FAM163AQ96GL9 167 aaPredicted RBP3.79□□□□□ -1.8
RNU6-54P-201ENST00000365563 ZNF219Q9P2Y4 722 aaPredicted RBP3.79□□□□□ -1.8
RNU6-54P-201ENST00000365563 NCBP3Q53F19 620 aaKnown RBP3.77□□□□□ -1.81
RNU6-54P-201ENST00000365563 ABCB7O75027 752 aa3.75□□□□□ -1.81
RNU6-54P-201ENST00000365563 TRHP20396 242 aaPredicted RBP3.74□□□□□ -1.81
RNU6-54P-201ENST00000365563 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.71□□□□□ -1.82
RNU6-54P-201ENST00000365563 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP3.7□□□□□ -1.82
RNU6-54P-201ENST00000365563 HNRNPUL2Q1KMD3 747 aaKnown RBP3.7□□□□□ -1.82
RNU6-54P-201ENST00000365563 PIP4P2Q8N4L2 257 aa3.69□□□□□ -1.82
RNU6-54P-201ENST00000365563 KRTAP4-8Q9BYQ9 185 aa3.69□□□□□ -1.82
RNU6-54P-201ENST00000365563 KRTAP9-6A0A140TA67 174 aa3.65□□□□□ -1.83
RNU6-54P-201ENST00000365563 POTEIP0CG38 1075 aa3.65□□□□□ -1.83
RNU6-54P-201ENST00000365563 AKT1S1Q96B36 256 aa3.65□□□□□ -1.83
RNU6-54P-201ENST00000365563 SAMD1Q6SPF0 538 aaPredicted RBP3.63□□□□□ -1.83
RNU6-54P-201ENST00000365563 KRTAP9-2Q9BYQ4 174 aa3.63□□□□□ -1.83
RNU6-54P-201ENST00000365563 KRTAP4-8A0A0G2JLE6 195 aa3.61□□□□□ -1.83
RNU6-54P-201ENST00000365563 NPM3O75607 178 aaKnown RBP3.61□□□□□ -1.83
RNU6-54P-201ENST00000365563 FXR2P51116 673 aaKnown RBP eCLIP3.58□□□□□ -1.84
RNU6-54P-201ENST00000365563 REM2Q8IYK8 340 aaPredicted RBP3.57□□□□□ -1.84
RNU6-54P-201ENST00000365563 ZBTB12Q9Y330 459 aaPredicted RBP3.57□□□□□ -1.84
RNU6-54P-201ENST00000365563 SUZ12Q15022 739 aaKnown RBP3.56□□□□□ -1.84
RNU6-54P-201ENST00000365563 KRTAP4-7Q9BYR0 210 aa3.55□□□□□ -1.84
RNU6-54P-201ENST00000365563 PITPNM1O00562 1244 aa3.54□□□□□ -1.84
RNU6-54P-201ENST00000365563 POLA2Q14181 598 aa3.54□□□□□ -1.84
RNU6-54P-201ENST00000365563 BTBD11A6QL63 1104 aa3.52□□□□□ -1.85
RNU6-54P-201ENST00000365563 SLC4A2P04920 1241 aa3.5□□□□□ -1.85
RNU6-54P-201ENST00000365563 C19orf67A6NJJ6 358 aa3.48□□□□□ -1.85
RNU6-54P-201ENST00000365563 POTEB2H3BUK9 544 aa3.48□□□□□ -1.85
RNU6-54P-201ENST00000365563 LCE3BQ5TA77 95 aa3.48□□□□□ -1.85
RNU6-54P-201ENST00000365563 PRKAR2AP13861 404 aaKnown RBP3.46□□□□□ -1.86
RNU6-54P-201ENST00000365563 OSCARQ8IYS5 282 aa3.46□□□□□ -1.86
RNU6-54P-201ENST00000365563 CLCN6P51797 869 aa3.45□□□□□ -1.86
RNU6-54P-201ENST00000365563 KRTAP9-9Q9BYP9 154 aa3.45□□□□□ -1.86
RNU6-54P-201ENST00000365563 KRTAP9-4Q9BYQ2 154 aa3.45□□□□□ -1.86
RNU6-54P-201ENST00000365563 KRTAP4-2Q9BYR5 136 aa3.42□□□□□ -1.86
RNU6-54P-201ENST00000365563 MYCNP04198 464 aaPredicted RBP3.41□□□□□ -1.86
RNU6-54P-201ENST00000365563 SPDYE1Q8NFV5 336 aaPredicted RBP3.4□□□□□ -1.87
RNU6-54P-201ENST00000365563 DCBLD2Q96PD2 775 aa3.4□□□□□ -1.87
RNU6-54P-201ENST00000365563 PSMG3-AS1Q96PY0 264 aa3.4□□□□□ -1.87
RNU6-54P-201ENST00000365563 CLEC11AQ9Y240 323 aa3.38□□□□□ -1.87
RNU6-54P-201ENST00000365563 SPDYE2BA6NHP3 402 aa3.36□□□□□ -1.87
RNU6-54P-201ENST00000365563 SPDYE6P0CI01 402 aa3.36□□□□□ -1.87
RNU6-54P-201ENST00000365563 SPDYE2Q495Y8 402 aa3.36□□□□□ -1.87
RNU6-54P-201ENST00000365563 CD44P16070 742 aaKnown RBP3.35□□□□□ -1.87
RNU6-54P-201ENST00000365563 KRTAP4-5Q9BYR2 181 aa3.35□□□□□ -1.87
RNU6-54P-201ENST00000365563 CHADLQ6NUI6 762 aa3.3□□□□□ -1.88
RNU6-54P-201ENST00000365563 MAMSTRQ6ZN01 415 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms