RNA–Protein interactions for RNA: ENST00000241312.8

CSMD2-201, Transcript of CUB and Sushi multiple domains 2, humanhuman

TSL 1 (best)

Gene CSMD2, Length 13,108 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD2-201ENST00000241312 DCAF8L2P0C7V8 631 aa11.18□□□□□ -0.62
CSMD2-201ENST00000241312 PELP1Q8IZL8 1130 aaKnown RBP11.01□□□□□ -0.65
CSMD2-201ENST00000241312 SUPT5HO00267 1087 aaKnown RBP10.78□□□□□ -0.68
CSMD2-201ENST00000241312 EHMT2Q96KQ7 1210 aa10.73□□□□□ -0.69
CSMD2-201ENST00000241312 SHROOM4Q9ULL8 1493 aa10.59□□□□□ -0.71
CSMD2-201ENST00000241312 NISCHQ9Y2I1 1504 aa10.55□□□□□ -0.72
CSMD2-201ENST00000241312 APLP2Q06481 763 aa10.5□□□□□ -0.73
CSMD2-201ENST00000241312 CCER1Q8TC90 406 aaPredicted RBP10.43□□□□□ -0.74
CSMD2-201ENST00000241312 MYT1Q01538 1121 aa10.41□□□□□ -0.74
CSMD2-201ENST00000241312 CENPBP07199 599 aaPredicted RBP10.4□□□□□ -0.74
CSMD2-201ENST00000241312 ERICH6Q7L0X2 663 aa10.4□□□□□ -0.74
CSMD2-201ENST00000241312 TTBK1Q5TCY1 1321 aaPredicted RBP10.4□□□□□ -0.75
CSMD2-201ENST00000241312 PCGF6Q9BYE7 350 aa10.34□□□□□ -0.75
CSMD2-201ENST00000241312 FAM9AQ8IZU1 332 aaPredicted RBP10.3□□□□□ -0.76
CSMD2-201ENST00000241312 ZEB1P37275 1124 aaPredicted RBP10.3□□□□□ -0.76
CSMD2-201ENST00000241312 NEFLP07196 543 aa10.2□□□□□ -0.78
CSMD2-201ENST00000241312 YTHDC1Q96MU7 727 aaKnown RBP10.12□□□□□ -0.79
CSMD2-201ENST00000241312 RANGAP1P46060 587 aaPredicted RBP10.12□□□□□ -0.79
CSMD2-201ENST00000241312 DAXXQ9UER7 740 aaPredicted RBP9.98□□□□□ -0.81
CSMD2-201ENST00000241312 TRIM41Q8WV44 630 aa9.98□□□□□ -0.81
CSMD2-201ENST00000241312 PPARGC1BQ86YN6 1023 aaKnown RBP9.96□□□□□ -0.82
CSMD2-201ENST00000241312 UBTFP17480 764 aaKnown RBP9.92□□□□□ -0.82
CSMD2-201ENST00000241312 ATP1B4Q9UN42 357 aaPredicted RBP9.92□□□□□ -0.82
CSMD2-201ENST00000241312 TRIM26Q12899 539 aaPredicted RBP9.79□□□□□ -0.84
CSMD2-201ENST00000241312 RTL5Q5HYW3 569 aaPredicted RBP9.78□□□□□ -0.84
CSMD2-201ENST00000241312 HRCP23327 699 aa9.75□□□□□ -0.85
CSMD2-201ENST00000241312 ZNF316A6NFI3 1004 aaPredicted RBP9.74□□□□□ -0.85
CSMD2-201ENST00000241312 CNGB1Q14028 1251 aaPredicted RBP9.71□□□□□ -0.85
CSMD2-201ENST00000241312 POLR3GLQ9BT43 218 aa9.7□□□□□ -0.86
CSMD2-201ENST00000241312 ITGAEP38570 1179 aa9.67□□□□□ -0.86
CSMD2-201ENST00000241312 LOC105371045A0A1W2PR82 267 aa9.62□□□□□ -0.87
CSMD2-201ENST00000241312 CLSPNQ9HAW4 1339 aa9.62□□□□□ -0.87
CSMD2-201ENST00000241312 HNRNPUL2Q1KMD3 747 aaKnown RBP9.58□□□□□ -0.88
CSMD2-201ENST00000241312 BCANQ96GW7 911 aa9.55□□□□□ -0.88
CSMD2-201ENST00000241312 DIEXFQ68CQ4 756 aaKnown RBP9.54□□□□□ -0.88
CSMD2-201ENST00000241312 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.54□□□□□ -0.88
CSMD2-201ENST00000241312 MYT1LQ9UL68 1186 aa9.54□□□□□ -0.88
CSMD2-201ENST00000241312 CHIC1Q5VXU3 224 aa9.48□□□□□ -0.89
CSMD2-201ENST00000241312 SLC4A1APQ9BWU0 796 aaKnown RBP9.48□□□□□ -0.89
CSMD2-201ENST00000241312 GTF3C3Q9Y5Q9 886 aa9.46□□□□□ -0.9
CSMD2-201ENST00000241312 ZBTB47Q9UFB7 747 aaPredicted RBP9.44□□□□□ -0.9
CSMD2-201ENST00000241312 CDK11AQ9UQ88 783 aaPredicted RBP9.43□□□□□ -0.9
CSMD2-201ENST00000241312 ANP32CO43423 234 aa9.4□□□□□ -0.9
CSMD2-201ENST00000241312 ANP32AP39687 249 aaKnown RBP9.38□□□□□ -0.91
CSMD2-201ENST00000241312 CANXP27824 592 aaKnown RBP9.36□□□□□ -0.91
CSMD2-201ENST00000241312 FAM50AQ14320 339 aaKnown RBP9.36□□□□□ -0.91
CSMD2-201ENST00000241312 NEUROD1Q13562 356 aa9.34□□□□□ -0.91
CSMD2-201ENST00000241312 BCL11AQ9H165 835 aa9.33□□□□□ -0.92
CSMD2-201ENST00000241312 ANP32BQ92688 251 aaKnown RBP9.33□□□□□ -0.92
CSMD2-201ENST00000241312 TRIM52Q96A61 297 aa9.31□□□□□ -0.92
CSMD2-201ENST00000241312 GLIPR1L2Q4G1C9 344 aa9.29□□□□□ -0.92
CSMD2-201ENST00000241312 ZNF326Q5BKZ1 582 aaKnown RBP9.29□□□□□ -0.92
CSMD2-201ENST00000241312 NEFMP07197 916 aa9.28□□□□□ -0.92
CSMD2-201ENST00000241312 ACIN1Q9UKV3 1341 aaKnown RBP9.24□□□□□ -0.93
CSMD2-201ENST00000241312 HSP90AA1P07900 732 aaKnown RBP9.24□□□□□ -0.93
CSMD2-201ENST00000241312 NPM2Q86SE8 214 aaKnown RBP9.24□□□□□ -0.93
CSMD2-201ENST00000241312 EIF5BO60841 1220 aaKnown RBP9.23□□□□□ -0.93
CSMD2-201ENST00000241312 UPF2Q9HAU5 1272 aaKnown RBP9.21□□□□□ -0.94
CSMD2-201ENST00000241312 SLC24A1O60721 1099 aa9.16□□□□□ -0.94
CSMD2-201ENST00000241312 NBR1Q14596 966 aa9.13□□□□□ -0.95
CSMD2-201ENST00000241312 TONSLQ96HA7 1378 aa9.11□□□□□ -0.95
CSMD2-201ENST00000241312 FKBP8Q14318 412 aa9.11□□□□□ -0.95
CSMD2-201ENST00000241312 ARXQ96QS3 562 aa9.1□□□□□ -0.95
CSMD2-201ENST00000241312 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.09□□□□□ -0.95
CSMD2-201ENST00000241312 DCAF1Q9Y4B6 1507 aa9.08□□□□□ -0.96
CSMD2-201ENST00000241312 ARID3CA6NKF2 412 aa9.07□□□□□ -0.96
CSMD2-201ENST00000241312 CCDC136Q96JN2 1154 aa9.05□□□□□ -0.96
CSMD2-201ENST00000241312 HNRNPUQ00839 825 aaKnown RBP eCLIP9.04□□□□□ -0.96
CSMD2-201ENST00000241312 SCAF1Q9H7N4 1312 aaKnown RBP9.04□□□□□ -0.96
CSMD2-201ENST00000241312 P3H3Q8IVL6 736 aa9.01□□□□□ -0.97
CSMD2-201ENST00000241312 IRX6P78412 446 aaPredicted RBP9.01□□□□□ -0.97
CSMD2-201ENST00000241312 MYH16Q9H6N6 1097 aa9.01□□□□□ -0.97
CSMD2-201ENST00000241312 ANP32EQ9BTT0 268 aa9.01□□□□□ -0.97
CSMD2-201ENST00000241312 SALL2Q9Y467 1007 aaPredicted RBP9.01□□□□□ -0.97
CSMD2-201ENST00000241312 FBLN2P98095 1184 aa8.99□□□□□ -0.97
CSMD2-201ENST00000241312 CDK11BP21127 795 aaKnown RBP8.99□□□□□ -0.97
CSMD2-201ENST00000241312 BECN1Q14457 450 aa8.99□□□□□ -0.97
CSMD2-201ENST00000241312 FAM9BQ8IZU0 186 aa8.98□□□□□ -0.97
CSMD2-201ENST00000241312 TNNT2P45379 298 aaPredicted RBP8.98□□□□□ -0.97
CSMD2-201ENST00000241312 ESF1Q9H501 851 aaKnown RBP8.97□□□□□ -0.97
CSMD2-201ENST00000241312 DDX10Q13206 875 aaKnown RBP8.97□□□□□ -0.97
CSMD2-201ENST00000241312 PABPN1Q86U42 306 aaKnown RBP eCLIP8.97□□□□□ -0.97
CSMD2-201ENST00000241312 DDRGK1Q96HY6 314 aa8.97□□□□□ -0.97
CSMD2-201ENST00000241312 GOLGA6L22H0YM25 854 aa8.96□□□□□ -0.97
CSMD2-201ENST00000241312 ABCC9O60706 1549 aa8.96□□□□□ -0.97
CSMD2-201ENST00000241312 ZNF777Q9ULD5 760 aaPredicted RBP8.96□□□□□ -0.97
CSMD2-201ENST00000241312 CSRNP3Q8WYN3 585 aa8.96□□□□□ -0.98
CSMD2-201ENST00000241312 TMC1Q8TDI8 760 aa8.95□□□□□ -0.98
CSMD2-201ENST00000241312 CCDC180Q9P1Z9 1646 aa8.94□□□□□ -0.98
CSMD2-201ENST00000241312 WDR43Q15061 677 aaKnown RBP eCLIP8.94□□□□□ -0.98
CSMD2-201ENST00000241312 MRS2Q9HD23 443 aa8.94□□□□□ -0.98
CSMD2-201ENST00000241312 TRIM44Q96DX7 344 aaPredicted RBP8.93□□□□□ -0.98
CSMD2-201ENST00000241312 NCLP19338 710 aaKnown RBP8.92□□□□□ -0.98
CSMD2-201ENST00000241312 STAG3Q9UJ98 1225 aa8.92□□□□□ -0.98
CSMD2-201ENST00000241312 SCRIBQ14160 1630 aa8.92□□□□□ -0.98
CSMD2-201ENST00000241312 SENP3-EIF4A1A0A087X0R7 540 aa8.91□□□□□ -0.98
CSMD2-201ENST00000241312 HIRIP3Q9BW71 556 aaPredicted RBP8.91□□□□□ -0.98
CSMD2-201ENST00000241312 MIER1Q8N108 512 aa8.9□□□□□ -0.98
CSMD2-201ENST00000241312 ERICH6BQ5W0A0 696 aa8.88□□□□□ -0.99
CSMD2-201ENST00000241312 PTMAP06454 111 aaKnown RBP8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms