RNA–Protein interactions for RNA: ENSMUST00000111180.8

Trim50-202, Transcript of E3 ubiquitin-protein ligase TRIM50, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Trim50, Length 1,456 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim50-202ENSMUST00000111180 Gm35339A0A140LHH9 1649 aa27.37■■□□□ 1.97
Trim50-202ENSMUST00000111180 NischQ80TM9 1593 aa26.78■■□□□ 1.88
Trim50-202ENSMUST00000111180 Abcc8B2RUS7 1588 aa25.98■■□□□ 1.75
Trim50-202ENSMUST00000111180 Abcc9P70170 1546 aa25.92■■□□□ 1.74
Trim50-202ENSMUST00000111180 ScribQ80U72 1612 aa25.35■■□□□ 1.65
Trim50-202ENSMUST00000111180 NacadQ5SWP3 1504 aa24.38■■□□□ 1.49
Trim50-202ENSMUST00000111180 Kdm5dQ62240 1548 aa24.38■■□□□ 1.49
Trim50-202ENSMUST00000111180 Sycp2Q9CUU3 1500 aa23.94■■□□□ 1.42
Trim50-202ENSMUST00000111180 Dcaf1Q80TR8 1506 aa23.86■■□□□ 1.41
Trim50-202ENSMUST00000111180 BicraF8VPZ9 1578 aa23.71■■□□□ 1.39
Trim50-202ENSMUST00000111180 Dnajc5bQ9CQ94 199 aa23.5■■□□□ 1.35
Trim50-202ENSMUST00000111180 Rb1cc1Q9ESK9 1588 aa23.36■■□□□ 1.33
Trim50-202ENSMUST00000111180 Rhox8Q6VSS7 320 aa23.25■■□□□ 1.31
Trim50-202ENSMUST00000111180 Thoc2B1AZI6 1594 aaKnown RBP23.07■■□□□ 1.28
Trim50-202ENSMUST00000111180 Pds5bQ4VA53 1446 aaKnown RBP23.06■■□□□ 1.28
Trim50-202ENSMUST00000111180 Ccdc180J3QNE4 1664 aa22.99■■□□□ 1.27
Trim50-202ENSMUST00000111180 Baz1aO88379 1555 aa22.97■■□□□ 1.27
Trim50-202ENSMUST00000111180 Crybg2B7ZCC2 1516 aa22.86■■□□□ 1.25
Trim50-202ENSMUST00000111180 Zcchc6Q5BLK4 1491 aaKnown RBP22.82■■□□□ 1.24
Trim50-202ENSMUST00000111180 Atad2bE9Q166 1460 aaKnown RBP22.76■■□□□ 1.23
Trim50-202ENSMUST00000111180 Cc2d2aQ8CFW7 1633 aa22.65■■□□□ 1.22
Trim50-202ENSMUST00000111180 Rtl1Q7M732 1744 aa22.61■■□□□ 1.21
Trim50-202ENSMUST00000111180 Ercc6F8VPZ5 1481 aa22.58■■□□□ 1.21
Trim50-202ENSMUST00000111180 Smarca2Q6DIC0 1577 aa22.5■■□□□ 1.19
Trim50-202ENSMUST00000111180 Smarca4Q3TKT4 1613 aaKnown RBP22.5■■□□□ 1.19
Trim50-202ENSMUST00000111180 Fam135aQ6NS59 1506 aa22.45■■□□□ 1.18
Trim50-202ENSMUST00000111180 Iqgap2Q3UQ44 1575 aa22.43■■□□□ 1.18
Trim50-202ENSMUST00000111180 Cecr2E9Q2Z1 1453 aa22.37■■□□□ 1.17
Trim50-202ENSMUST00000111180 Wdr62Q3U3T8 1523 aa22.29■■□□□ 1.16
Trim50-202ENSMUST00000111180 Frmpd1A2AKB4 1549 aa22.22■■□□□ 1.15
Trim50-202ENSMUST00000111180 Phldb1Q6PDH0 1371 aaKnown RBP22.21■■□□□ 1.15
Trim50-202ENSMUST00000111180 Ubl4bQ9CQ84 188 aa22.18■■□□□ 1.14
Trim50-202ENSMUST00000111180 Baz1bQ9Z277 1479 aa22.09■■□□□ 1.13
Trim50-202ENSMUST00000111180 Unc13aQ4KUS2 1712 aa22.05■■□□□ 1.12
Trim50-202ENSMUST00000111180 Mrc2Q64449 1479 aa21.88■■□□□ 1.09
Trim50-202ENSMUST00000111180 Cttnbp2B9EJA2 1648 aa21.79■■□□□ 1.08
Trim50-202ENSMUST00000111180 Ccdc136Q3TVA9 1136 aa21.78■■□□□ 1.08
Trim50-202ENSMUST00000111180 CftrP26361 1476 aa21.78■■□□□ 1.08
Trim50-202ENSMUST00000111180 Synj1Q8CHC4 1574 aa21.71■■□□□ 1.07
Trim50-202ENSMUST00000111180 Brd4Q9ESU6 1400 aaKnown RBP21.7■■□□□ 1.06
Trim50-202ENSMUST00000111180 Esf1Q3V1V3 845 aaKnown RBP21.68■■□□□ 1.06
Trim50-202ENSMUST00000111180 Trim41Q5NCC3 630 aa21.67■■□□□ 1.06
Trim50-202ENSMUST00000111180 Dnajc5P60904 198 aa21.52■■□□□ 1.03
Trim50-202ENSMUST00000111180 Lrriq1Q0P5X1 1673 aa21.51■■□□□ 1.03
Trim50-202ENSMUST00000111180 Cux2P70298 1426 aa21.47■■□□□ 1.03
Trim50-202ENSMUST00000111180 Kif15Q6P9L6 1387 aa21.45■■□□□ 1.02
Trim50-202ENSMUST00000111180 Rsf1E9PWW9 1441 aaKnown RBP21.43■■□□□ 1.02
Trim50-202ENSMUST00000111180 Kif21aQ9QXL2 1672 aa21.38■■□□□ 1.01
Trim50-202ENSMUST00000111180 Npm1Q61937 292 aaKnown RBP21.36■■□□□ 1.01
Trim50-202ENSMUST00000111180 Eif4g3Q80XI3 1579 aaKnown RBP21.2■□□□□ 0.98
Trim50-202ENSMUST00000111180 Lamc3Q9R0B6 1581 aa21.2■□□□□ 0.98
Trim50-202ENSMUST00000111180 Il27Q8K3I6 234 aa21.15■□□□□ 0.98
Trim50-202ENSMUST00000111180 Cep164Q5DU05 1446 aa21.15■□□□□ 0.98
Trim50-202ENSMUST00000111180 Shroom2A2ALU4 1481 aa21.03■□□□□ 0.96
Trim50-202ENSMUST00000111180 Golga3P55937 1487 aa21.02■□□□□ 0.96
Trim50-202ENSMUST00000111180 Cngb1E1AZ71 1325 aa20.99■□□□□ 0.95
Trim50-202ENSMUST00000111180 Dhx29Q6PGC1 1365 aaKnown RBP20.98■□□□□ 0.95
Trim50-202ENSMUST00000111180 Urb2E9Q7L1 1524 aaKnown RBP20.98■□□□□ 0.95
Trim50-202ENSMUST00000111180 Top2bQ64511 1612 aa20.98■□□□□ 0.95
Trim50-202ENSMUST00000111180 Ccdc18Q640L5 1455 aa20.97■□□□□ 0.95
Trim50-202ENSMUST00000111180 Plb1Q3TTY0 1478 aa20.95■□□□□ 0.94
Trim50-202ENSMUST00000111180 TnnQ80Z71 1560 aa20.92■□□□□ 0.94
Trim50-202ENSMUST00000111180 LrpprcQ6PB66 1392 aaKnown RBP20.9■□□□□ 0.94
Trim50-202ENSMUST00000111180 Pabpn1Q8CCS6 302 aaKnown RBP20.89■□□□□ 0.94
Trim50-202ENSMUST00000111180 Crocc2F6XLV1 1638 aa20.85■□□□□ 0.93
Trim50-202ENSMUST00000111180 Pelp1Q9DBD5 1123 aaKnown RBP20.82■□□□□ 0.92
Trim50-202ENSMUST00000111180 Camsap1A2AHC3 1581 aa20.82■□□□□ 0.92
Trim50-202ENSMUST00000111180 Col17a1Q07563 1470 aa20.79■□□□□ 0.92
Trim50-202ENSMUST00000111180 HrcG5E8J6 738 aa20.78■□□□□ 0.92
Trim50-202ENSMUST00000111180 Rusc2Q80U22 1514 aa20.75■□□□□ 0.91
Trim50-202ENSMUST00000111180 PogzQ8BZH4 1409 aaKnown RBP20.71■□□□□ 0.91
Trim50-202ENSMUST00000111180 Ift140E9PY46 1464 aa20.7■□□□□ 0.91
Trim50-202ENSMUST00000111180 Fmn1Q05860 1466 aa20.69■□□□□ 0.9
Trim50-202ENSMUST00000111180 Duox2A2AQ99 1517 aa20.63■□□□□ 0.89
Trim50-202ENSMUST00000111180 Zcchc11B2RX14 1644 aaKnown RBP20.54■□□□□ 0.88
Trim50-202ENSMUST00000111180 Ccdc88bQ4QRL3 1481 aa20.54■□□□□ 0.88
Trim50-202ENSMUST00000111180 Disp1Q3TDN0 1521 aa20.53■□□□□ 0.88
Trim50-202ENSMUST00000111180 Setd1bQ8CFT2 1985 aa20.5■□□□□ 0.87
Trim50-202ENSMUST00000111180 Grin2bQ01097 1482 aa20.5■□□□□ 0.87
Trim50-202ENSMUST00000111180 Pbrm1Q8BSQ9 1634 aaKnown RBP20.48■□□□□ 0.87
Trim50-202ENSMUST00000111180 Samd9lQ69Z37 1561 aa20.47■□□□□ 0.87
Trim50-202ENSMUST00000111180 Cc2d2bA0A286YDU8 1405 aa20.44■□□□□ 0.86
Trim50-202ENSMUST00000111180 Top2aQ01320 1528 aaKnown RBP20.44■□□□□ 0.86
Trim50-202ENSMUST00000111180 Efcab5A0JP43 1406 aa20.42■□□□□ 0.86
Trim50-202ENSMUST00000111180 Nup160Q9Z0W3 1402 aaKnown RBP20.41■□□□□ 0.86
Trim50-202ENSMUST00000111180 Chic1Q8CBW7 227 aa20.38■□□□□ 0.85
Trim50-202ENSMUST00000111180 Rad54l2Q99NG0 1466 aa20.37■□□□□ 0.85
Trim50-202ENSMUST00000111180 Ttbk1Q6PCN3 1308 aa20.36■□□□□ 0.85
Trim50-202ENSMUST00000111180 Fgd6Q69ZL1 1399 aa20.31■□□□□ 0.84
Trim50-202ENSMUST00000111180 Grin2aP35436 1464 aa20.27■□□□□ 0.84
Trim50-202ENSMUST00000111180 PtprkP35822 1457 aa20.27■□□□□ 0.84
Trim50-202ENSMUST00000111180 Adgrl3Q80TS3 1537 aa20.26■□□□□ 0.83
Trim50-202ENSMUST00000111180 AqrQ8CFQ3 1481 aaKnown RBP20.26■□□□□ 0.83
Trim50-202ENSMUST00000111180 Gm156Q58A37 223 aa20.25■□□□□ 0.83
Trim50-202ENSMUST00000111180 Zeb1Q64318 1117 aa20.25■□□□□ 0.83
Trim50-202ENSMUST00000111180 Cep170Q6A065 1588 aa20.25■□□□□ 0.83
Trim50-202ENSMUST00000111180 Magi3Q9EQJ9 1476 aa20.25■□□□□ 0.83
Trim50-202ENSMUST00000111180 Pcdh10E9PXQ7 1057 aa20.24■□□□□ 0.83
Trim50-202ENSMUST00000111180 Arhgef5E9Q7D5 1581 aa20.24■□□□□ 0.83
Trim50-202ENSMUST00000111180 AknaQ80VW7 1404 aa20.23■□□□□ 0.83
Retrieved 100 of 22,080 RNA–protein pairs in 67.7 ms