RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 ZDHHC12Q96GR4 267 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 OR2A14Q96R47 310 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 PKP4Q99569 1192 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 RBBP8Q99708 897 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 CMKLR1Q99788 373 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 FUT8Q9BYC5 575 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 KLHL25Q9H0H3 589 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 ZNF768Q9H5H4 540 aaKnown RBP13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 SIDT1Q9NXL6 827 aaKnown RBP13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 ACTR10Q9NZ32 417 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 DKK4Q9UBT3 224 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 POMT2Q9UKY4 750 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 PIKFYVEQ9Y2I7 2098 aa13.76□□□□□ -0.21
SHKBP1-217ENST00000598558 UNC13CQ8NB66 2214 aa13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 A0A1W2PPV9 198 aa13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 GSAPA4D1B5 854 aa13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 RASGRF2O14827 1237 aa13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 RASSF9O75901 435 aa13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 ACSL3O95573 720 aa13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 CBSLP0DN79 551 aa13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 FOLR1P15328 257 aa13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 ST6GAL1P15907 406 aa13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 UGT2B7P16662 529 aa13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 CSTF2P33240 577 aaKnown RBP eCLIP13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 SHMT2P34897 504 aa13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 CBSP35520 551 aa13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 SKIV2L2P42285 1042 aaKnown RBP13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 YBX1P67809 324 aaKnown RBP13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 EIF3IQ13347 325 aaKnown RBP13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 KCNAB1Q14722 419 aa13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 ZIC1Q15915 447 aa13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 TTLL9Q3SXZ7 439 aa13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 KLHL35Q6PF15 583 aa13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 IGF2-ASQ6U949 168 aa13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 TAX1BP1Q86VP1 789 aa13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 RAD51AP1Q96B01 352 aa13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 LINGO1Q96FE5 620 aa13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 SLC41A2Q96JW4 573 aa13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 CPNE1Q99829 537 aa13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 CTRCQ99895 268 aa13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 EPB41L4BQ9H329 900 aa13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 FOXJ2Q9P0K8 574 aa13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 CORO1CQ9ULV4 474 aaPredicted RBP13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 WDFY3Q8IZQ1 3526 aa13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 KNTC1P50748 2209 aa13.75□□□□□ -0.21
SHKBP1-217ENST00000598558 CHD8Q9HCK8 2581 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 PIPSLA2A3N6 862 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 SLC9B1P1A6NJY1 282 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 MYO1CO00159 1063 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 TOX3O15405 576 aaPredicted RBP13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 HCRTR1O43613 425 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 SPAG6O75602 509 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 JMJD7P0C870 316 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 ENO3P13929 434 aaPredicted RBP13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 NELFEP18615 380 aaKnown RBP13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 SLC5A2P31639 672 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 STX2P32856 288 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 GP5P40197 560 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 RAB28P51157 221 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 MC2RQ01718 297 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 PDAP1Q13442 181 aaKnown RBP13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 ZXDCQ2QGD7 858 aaPredicted RBP13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 TBC1D25Q3MII6 688 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 UGT3A1Q6NUS8 523 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 CLEC14AQ86T13 490 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 FAM129CQ86XR2 697 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 SPATA6LQ8N4H0 392 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 OR9A1PQ8NGU1 263 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 OR2L8Q8NGY9 312 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 ZCCHC14Q8WYQ9 949 aaKnown RBP13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 CDKL2Q92772 493 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 FOPNLQ96NB1 174 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 TRAPPC9Q96Q05 1148 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 GPR22Q99680 433 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 PITPNM3Q9BZ71 974 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 ACSS3Q9H6R3 686 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 NSMCE4AQ9NXX6 385 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 OR6C2Q9NZP2 312 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 SLC39A10Q9ULF5 831 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 PDE10AQ9Y233 779 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 KLHL20Q9Y2M5 609 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 RAXQ9Y2V3 346 aa13.74□□□□□ -0.21
SHKBP1-217ENST00000598558 TLCD2A6NGC4 264 aa13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 C2orf74A8MZ97 194 aa13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 B4E171 279 aa13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 EIF3FO00303 357 aaPredicted RBP13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 PHGDHO43175 533 aaKnown RBP13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 RPN2P04844 631 aa13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 ITGA2BP08514 1039 aa13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 ERGP11308 486 aa13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 PSMB5P28074 263 aa13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 RBMS1P29558 406 aaKnown RBP13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 CCNFP41002 786 aa13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 TSPAN7P41732 249 aa13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 IL2P60568 153 aa13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 PRKAA1Q13131 559 aa13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 CYP2A13Q16696 494 aa13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 PHKG1Q16816 387 aa13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 GRTP1Q5TC63 336 aa13.73□□□□□ -0.21
SHKBP1-217ENST00000598558 ANKS6Q68DC2 871 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms