RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 SLC39A1Q9NY26 324 aa13.08□□□□□ -0.32
CLK3-218ENST00000566926 CTNNAL1Q9UBT7 734 aa13.08□□□□□ -0.32
CLK3-218ENST00000566926 KLHL3Q9UH77 587 aa13.08□□□□□ -0.32
CLK3-218ENST00000566926 TBK1Q9UHD2 729 aa13.08□□□□□ -0.32
CLK3-218ENST00000566926 PCDHB11Q9Y5F2 797 aa13.08□□□□□ -0.32
CLK3-218ENST00000566926 PCDHGA3Q9Y5H0 932 aa13.08□□□□□ -0.32
CLK3-218ENST00000566926 CFAP20Q9Y6A4 193 aaKnown RBP13.08□□□□□ -0.32
CLK3-218ENST00000566926 SDK2Q58EX2 2172 aa13.08□□□□□ -0.32
CLK3-218ENST00000566926 ZZEF1O43149 2961 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 PCM1Q15154 2024 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 PMS2P1A4D2B8 440 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 EFCAB7A8K855 629 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 AGRPO00253 132 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 PRMT5O14744 637 aaPredicted RBP13.07□□□□□ -0.32
CLK3-218ENST00000566926 KLK10O43240 276 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 NDUFS3O75489 264 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 FGF3P11487 239 aaPredicted RBP13.07□□□□□ -0.32
CLK3-218ENST00000566926 CCL4P13236 92 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 ETV5P41161 510 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 PPP2R2AP63151 447 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 COL28A1Q2UY09 1125 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 SYTL3Q4VX76 610 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 DCAF12Q5T6F0 453 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 ARMC6Q6NXE6 501 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 C19orf48Q6RUI8 117 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 LCA5Q86VQ0 697 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 OOSP2Q86WS3 158 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 CILP2Q8IUL8 1156 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 OTUD6BQ8N6M0 293 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 ACVR1CQ8NER5 493 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 ISL2Q96A47 359 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 CABS1Q96KC9 395 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 RMDN2Q96LZ7 410 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 TGM7Q96PF1 710 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 PANX3Q96QZ0 392 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 FERD3LQ96RJ6 166 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 CD180Q99467 661 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 ZPBPQ9BS86 351 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 DDA1Q9BW61 102 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 OR52A5Q9H2C5 316 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 MVB12BQ9H7P6 319 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 FBXO5Q9UKT4 447 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 LHX6Q9UPM6 363 aa13.07□□□□□ -0.32
CLK3-218ENST00000566926 PRAMEF33A0A0G2JMD5 474 aa13.06□□□□□ -0.32
CLK3-218ENST00000566926 MATN2O00339 956 aa13.06□□□□□ -0.32
CLK3-218ENST00000566926 KPNA5O15131 536 aa13.06□□□□□ -0.32
CLK3-218ENST00000566926 KDM1AO60341 852 aa13.06□□□□□ -0.32
CLK3-218ENST00000566926 PRAMEF10O60809 474 aa13.06□□□□□ -0.32
CLK3-218ENST00000566926 RASSF9O75901 435 aa13.06□□□□□ -0.32
CLK3-218ENST00000566926 LIPCP11150 499 aa13.06□□□□□ -0.32
CLK3-218ENST00000566926 ITPKBP27987 946 aa13.06□□□□□ -0.32
CLK3-218ENST00000566926 LEPRP48357 1165 aaKnown RBP13.06□□□□□ -0.32
CLK3-218ENST00000566926 GFERP55789 205 aa13.06□□□□□ -0.32
CLK3-218ENST00000566926 TMPRSS3P57727 454 aa13.06□□□□□ -0.32
CLK3-218ENST00000566926 MC2RQ01718 297 aa13.06□□□□□ -0.32
CLK3-218ENST00000566926 TLE3Q04726 772 aa13.06□□□□□ -0.32
CLK3-218ENST00000566926 PRKAA1Q13131 559 aa13.06□□□□□ -0.32
CLK3-218ENST00000566926 TYSND1Q2T9J0 566 aa13.06□□□□□ -0.32
CLK3-218ENST00000566926 ZNF658BQ4V348 819 aaPredicted RBP13.06□□□□□ -0.32
CLK3-218ENST00000566926 PTRHD1Q6GMV3 140 aaKnown RBP13.06□□□□□ -0.32
CLK3-218ENST00000566926 IRGCQ6NXR0 463 aa13.06□□□□□ -0.32
CLK3-218ENST00000566926 CEACAM20Q6UY09 585 aa13.06□□□□□ -0.32
CLK3-218ENST00000566926 PRSS42Q7Z5A4 293 aa13.06□□□□□ -0.32
CLK3-218ENST00000566926 PDZD3Q86UT5 571 aa13.06□□□□□ -0.32
CLK3-218ENST00000566926 EXOC3L1Q86VI1 746 aa13.06□□□□□ -0.32
CLK3-218ENST00000566926 SRRM1Q8IYB3 904 aaKnown RBP13.06□□□□□ -0.32
CLK3-218ENST00000566926 UNC5BQ8IZJ1 945 aa13.06□□□□□ -0.32
CLK3-218ENST00000566926 CARFQ8N187 725 aa13.06□□□□□ -0.32
CLK3-218ENST00000566926 LILRA3Q8N6C8 439 aaPredicted RBP13.06□□□□□ -0.32
CLK3-218ENST00000566926 SPDYE1Q8NFV5 336 aaPredicted RBP13.06□□□□□ -0.32
CLK3-218ENST00000566926 MZB1Q8WU39 189 aa13.06□□□□□ -0.32
CLK3-218ENST00000566926 ASZ1Q8WWH4 475 aa13.06□□□□□ -0.32
CLK3-218ENST00000566926 RSC1A1Q92681 617 aa13.06□□□□□ -0.32
CLK3-218ENST00000566926 TFGQ92734 400 aaPredicted RBP13.06□□□□□ -0.32
CLK3-218ENST00000566926 MRRFQ96E11 262 aaKnown RBP13.06□□□□□ -0.32
CLK3-218ENST00000566926 MCMBPQ9BTE3 642 aa13.06□□□□□ -0.32
CLK3-218ENST00000566926 ZNF768Q9H5H4 540 aaKnown RBP13.06□□□□□ -0.32
CLK3-218ENST00000566926 FBXO8Q9NRD0 319 aa13.06□□□□□ -0.32
CLK3-218ENST00000566926 MKS1Q9NXB0 559 aa13.06□□□□□ -0.32
CLK3-218ENST00000566926 GNPTGQ9UJJ9 305 aa13.06□□□□□ -0.32
CLK3-218ENST00000566926 PRSS21Q9Y6M0 314 aa13.06□□□□□ -0.32
CLK3-218ENST00000566926 SLC5A10A0PJK1 596 aa13.05□□□□□ -0.32
CLK3-218ENST00000566926 C9orf172C9J069 976 aa13.05□□□□□ -0.32
CLK3-218ENST00000566926 TRIM49D1C9J1S8 452 aa13.05□□□□□ -0.32
CLK3-218ENST00000566926 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.05□□□□□ -0.32
CLK3-218ENST00000566926 H3BMM5 538 aa13.05□□□□□ -0.32
CLK3-218ENST00000566926 STMND1H3BQB6 276 aa13.05□□□□□ -0.32
CLK3-218ENST00000566926 PRPF4O43172 522 aaKnown RBP eCLIP13.05□□□□□ -0.32
CLK3-218ENST00000566926 OR1I1O60431 355 aa13.05□□□□□ -0.32
CLK3-218ENST00000566926 APOA4P06727 396 aa13.05□□□□□ -0.32
CLK3-218ENST00000566926 PDHA2P29803 388 aa13.05□□□□□ -0.32
CLK3-218ENST00000566926 HPDP32754 393 aaPredicted RBP13.05□□□□□ -0.32
CLK3-218ENST00000566926 SLC1A2P43004 574 aa13.05□□□□□ -0.32
CLK3-218ENST00000566926 SERPINB8P50452 374 aa13.05□□□□□ -0.32
CLK3-218ENST00000566926 ADARP55265 1226 aaKnown RBP13.05□□□□□ -0.32
CLK3-218ENST00000566926 BOP1Q14137 746 aaKnown RBP13.05□□□□□ -0.32
CLK3-218ENST00000566926 CACHD1Q5VU97 1274 aa13.05□□□□□ -0.32
CLK3-218ENST00000566926 DUS1LQ6P1R4 473 aaKnown RBP13.05□□□□□ -0.32
CLK3-218ENST00000566926 XKR5Q6UX68 686 aa13.05□□□□□ -0.32
CLK3-218ENST00000566926 ZC3HC1Q86WB0 502 aaKnown RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms