RNA–Protein interactions for RNA: ENST00000564641.1

CHD9-212, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 4

Gene CHD9, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-212ENST00000564641 CSTF3Q12996 717 aaKnown RBP3.84□□□□□ -1.79
CHD9-212ENST00000564641 RRS1Q15050 365 aaKnown RBP3.84□□□□□ -1.79
CHD9-212ENST00000564641 TOMM20Q15388 145 aa3.84□□□□□ -1.79
CHD9-212ENST00000564641 TSTQ16762 297 aaKnown RBP3.84□□□□□ -1.79
CHD9-212ENST00000564641 NDUFAF5Q5TEU4 345 aa3.84□□□□□ -1.79
CHD9-212ENST00000564641 NSUN5P2Q63ZY6 315 aa3.84□□□□□ -1.79
CHD9-212ENST00000564641 SH2D6Q7Z4S9 175 aa3.84□□□□□ -1.79
CHD9-212ENST00000564641 GPALPP1Q8IXQ4 340 aa3.84□□□□□ -1.79
CHD9-212ENST00000564641 C1orf52Q8N6N3 182 aaKnown RBP3.84□□□□□ -1.79
CHD9-212ENST00000564641 FGFBP3Q8TAT2 258 aa3.84□□□□□ -1.79
CHD9-212ENST00000564641 SMPDL3BQ92485 455 aa3.84□□□□□ -1.79
CHD9-212ENST00000564641 TESK2Q96S53 571 aa3.84□□□□□ -1.79
CHD9-212ENST00000564641 RBM4BQ9BQ04 359 aaKnown RBP3.84□□□□□ -1.79
CHD9-212ENST00000564641 PSD2Q9BQI7 771 aa3.84□□□□□ -1.79
CHD9-212ENST00000564641 PAK5Q9P286 719 aa3.84□□□□□ -1.79
CHD9-212ENST00000564641 NOL7Q9UMY1 257 aaKnown RBP3.84□□□□□ -1.79
CHD9-212ENST00000564641 GPR34Q9UPC5 381 aa3.84□□□□□ -1.79
CHD9-212ENST00000564641 KIF3AQ9Y496 699 aa3.84□□□□□ -1.79
CHD9-212ENST00000564641 CLIC4Q9Y696 253 aa3.84□□□□□ -1.79
CHD9-212ENST00000564641 IGSF1Q8N6C5 1336 aa3.84□□□□□ -1.79
CHD9-212ENST00000564641 C4BP0C0L5 1744 aa3.84□□□□□ -1.8
CHD9-212ENST00000564641 TAF1LQ8IZX4 1826 aa3.84□□□□□ -1.8
CHD9-212ENST00000564641 PRR32B1ATL7 298 aa3.83□□□□□ -1.8
CHD9-212ENST00000564641 ATP2A1O14983 1001 aa3.83□□□□□ -1.8
CHD9-212ENST00000564641 GPR137BO60478 399 aa3.83□□□□□ -1.8
CHD9-212ENST00000564641 GFPT2O94808 682 aa3.83□□□□□ -1.8
CHD9-212ENST00000564641 CSPG5O95196 566 aa3.83□□□□□ -1.8
CHD9-212ENST00000564641 CLEC3BP05452 202 aa3.83□□□□□ -1.8
CHD9-212ENST00000564641 KRT19P08727 400 aa3.83□□□□□ -1.8
CHD9-212ENST00000564641 LAMP2P13473 410 aa3.83□□□□□ -1.8
CHD9-212ENST00000564641 TYMPP19971 482 aa3.83□□□□□ -1.8
CHD9-212ENST00000564641 RAD52P43351 418 aa3.83□□□□□ -1.8
CHD9-212ENST00000564641 TNNT3P45378 269 aaPredicted RBP3.83□□□□□ -1.8
CHD9-212ENST00000564641 OLR1P78380 273 aa3.83□□□□□ -1.8
CHD9-212ENST00000564641 MRPS5P82675 430 aaKnown RBP3.83□□□□□ -1.8
CHD9-212ENST00000564641 HMGN5P82970 282 aaKnown RBP3.83□□□□□ -1.8
CHD9-212ENST00000564641 NUCB1Q02818 461 aa3.83□□□□□ -1.8
CHD9-212ENST00000564641 EIF4A2Q14240 407 aaKnown RBP3.83□□□□□ -1.8
CHD9-212ENST00000564641 KRT32Q14532 448 aa3.83□□□□□ -1.8
CHD9-212ENST00000564641 FAM205BPQ63HN1 556 aa3.83□□□□□ -1.8
CHD9-212ENST00000564641 KRT77Q7Z794 578 aa3.83□□□□□ -1.8
CHD9-212ENST00000564641 SDCCAG8Q86SQ7 713 aaPredicted RBP3.83□□□□□ -1.8
CHD9-212ENST00000564641 NGEFQ8N5V2 710 aa3.83□□□□□ -1.8
CHD9-212ENST00000564641 C1orf131Q8NDD1 294 aaKnown RBP3.83□□□□□ -1.8
CHD9-212ENST00000564641 MOCOSQ96EN8 888 aa3.83□□□□□ -1.8
CHD9-212ENST00000564641 GMPPAQ96IJ6 420 aaPredicted RBP3.83□□□□□ -1.8
CHD9-212ENST00000564641 SLX1AQ9BQ83 275 aa3.83□□□□□ -1.8
CHD9-212ENST00000564641 NUDT16L1Q9BRJ7 211 aaKnown RBP3.83□□□□□ -1.8
CHD9-212ENST00000564641 KRTAP4-4Q9BYR3 166 aa3.83□□□□□ -1.8
CHD9-212ENST00000564641 CCDC68Q9H2F9 335 aa3.83□□□□□ -1.8
CHD9-212ENST00000564641 RANGRFQ9HD47 186 aaPredicted RBP3.83□□□□□ -1.8
CHD9-212ENST00000564641 SIX2Q9NPC8 291 aa3.83□□□□□ -1.8
CHD9-212ENST00000564641 COQ3Q9NZJ6 369 aa3.83□□□□□ -1.8
CHD9-212ENST00000564641 CACNG5Q9UF02 275 aa3.83□□□□□ -1.8
CHD9-212ENST00000564641 NAALADL1Q9UQQ1 740 aa3.83□□□□□ -1.8
CHD9-212ENST00000564641 KNSTRNQ9Y448 316 aa3.83□□□□□ -1.8
CHD9-212ENST00000564641 FLT1P17948 1338 aa3.83□□□□□ -1.8
CHD9-212ENST00000564641 STK36Q9NRP7 1315 aa3.83□□□□□ -1.8
CHD9-212ENST00000564641 ATP10DQ9P241 1426 aa3.83□□□□□ -1.8
CHD9-212ENST00000564641 MEGF6O75095 1541 aa3.83□□□□□ -1.8
CHD9-212ENST00000564641 PKD1L3Q7Z443 1732 aa3.83□□□□□ -1.8
CHD9-212ENST00000564641 MAP2P11137 1827 aaKnown RBP3.83□□□□□ -1.8
CHD9-212ENST00000564641 CACNA1FO60840 1977 aa3.82□□□□□ -1.8
CHD9-212ENST00000564641 ITGB4P16144 1822 aa3.82□□□□□ -1.8
CHD9-212ENST00000564641 ANKRD26Q9UPS8 1709 aa3.82□□□□□ -1.8
CHD9-212ENST00000564641 HCRTR2O43614 444 aa3.82□□□□□ -1.8
CHD9-212ENST00000564641 NDUFS3O75489 264 aa3.82□□□□□ -1.8
CHD9-212ENST00000564641 WISP2O76076 250 aa3.82□□□□□ -1.8
CHD9-212ENST00000564641 MMP10P09238 476 aa3.82□□□□□ -1.8
CHD9-212ENST00000564641 ALOX12P18054 663 aa3.82□□□□□ -1.8
CHD9-212ENST00000564641 F2RL1P55085 397 aa3.82□□□□□ -1.8
CHD9-212ENST00000564641 TAS2R40P59535 323 aa3.82□□□□□ -1.8
CHD9-212ENST00000564641 ARF3P61204 181 aaPredicted RBP3.82□□□□□ -1.8
CHD9-212ENST00000564641 ARF1P84077 181 aaKnown RBP3.82□□□□□ -1.8
CHD9-212ENST00000564641 POU5F1Q01860 360 aaKnown RBP3.82□□□□□ -1.8
CHD9-212ENST00000564641 GABPB1Q06547 395 aaPredicted RBP3.82□□□□□ -1.8
CHD9-212ENST00000564641 GOLGA8DPQ0D2H9 430 aa3.82□□□□□ -1.8
CHD9-212ENST00000564641 FRG1Q14331 258 aaKnown RBP3.82□□□□□ -1.8
CHD9-212ENST00000564641 FAM133BQ5BKY9 247 aaKnown RBP3.82□□□□□ -1.8
CHD9-212ENST00000564641 SEPT14Q6ZU15 432 aa3.82□□□□□ -1.8
CHD9-212ENST00000564641 R3HCC1LQ7Z5L2 792 aaKnown RBP3.82□□□□□ -1.8
CHD9-212ENST00000564641 GALNT5Q7Z7M9 940 aa3.82□□□□□ -1.8
CHD9-212ENST00000564641 SPAG16Q8N0X2 631 aa3.82□□□□□ -1.8
CHD9-212ENST00000564641 OR8H2Q8N162 312 aa3.82□□□□□ -1.8
CHD9-212ENST00000564641 PDCL2Q8N4E4 241 aa3.82□□□□□ -1.8
CHD9-212ENST00000564641 INTS12Q96CB8 462 aaKnown RBP3.82□□□□□ -1.8
CHD9-212ENST00000564641 NSUN4Q96CB9 384 aaKnown RBP3.82□□□□□ -1.8
CHD9-212ENST00000564641 SMC6Q96SB8 1091 aa3.82□□□□□ -1.8
CHD9-212ENST00000564641 BARD1Q99728 777 aaKnown RBP3.82□□□□□ -1.8
CHD9-212ENST00000564641 RHNO1Q9BSD3 238 aa3.82□□□□□ -1.8
CHD9-212ENST00000564641 TEX13AQ9BXU3 409 aaPredicted RBP3.82□□□□□ -1.8
CHD9-212ENST00000564641 PIGMQ9H3S5 423 aa3.82□□□□□ -1.8
CHD9-212ENST00000564641 YY1AP1Q9H869 796 aa3.82□□□□□ -1.8
CHD9-212ENST00000564641 EPB41L5Q9HCM4 733 aa3.82□□□□□ -1.8
CHD9-212ENST00000564641 ATAD3AQ9NVI7 634 aa3.82□□□□□ -1.8
CHD9-212ENST00000564641 NKIRAS2Q9NYR9 191 aa3.82□□□□□ -1.8
CHD9-212ENST00000564641 RCC2Q9P258 522 aaKnown RBP3.82□□□□□ -1.8
CHD9-212ENST00000564641 CNOT8Q9UFF9 292 aaKnown RBP3.82□□□□□ -1.8
CHD9-212ENST00000564641 UBR3Q6ZT12 1888 aa3.81□□□□□ -1.8
CHD9-212ENST00000564641 TUBGCP6Q96RT7 1819 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms