RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 MARCH4Q9P2E8 410 aaPredicted RBP13.2□□□□□ -0.3
TCOF1-215ENST00000515516 GPN3Q9UHW5 284 aaPredicted RBP13.2□□□□□ -0.3
TCOF1-215ENST00000515516 SLC39A10Q9ULF5 831 aa13.2□□□□□ -0.3
TCOF1-215ENST00000515516 PPP2R2CQ9Y2T4 447 aa13.2□□□□□ -0.3
TCOF1-215ENST00000515516 ZNF106Q9H2Y7 1883 aaKnown RBP13.19□□□□□ -0.3
TCOF1-215ENST00000515516 ARGFXA6NJG6 315 aa13.19□□□□□ -0.3
TCOF1-215ENST00000515516 GPC4O75487 556 aa13.19□□□□□ -0.3
TCOF1-215ENST00000515516 VAPBO95292 243 aa13.19□□□□□ -0.3
TCOF1-215ENST00000515516 CD63P08962 238 aa13.19□□□□□ -0.3
TCOF1-215ENST00000515516 PAMP19021 973 aa13.19□□□□□ -0.3
TCOF1-215ENST00000515516 TPSB2P20231 275 aa13.19□□□□□ -0.3
TCOF1-215ENST00000515516 AOAHP28039 575 aa13.19□□□□□ -0.3
TCOF1-215ENST00000515516 NMBRP28336 390 aa13.19□□□□□ -0.3
TCOF1-215ENST00000515516 PKLRP30613 574 aa13.19□□□□□ -0.3
TCOF1-215ENST00000515516 CCL11P51671 97 aa13.19□□□□□ -0.3
TCOF1-215ENST00000515516 TRIP13Q15645 432 aaPredicted RBP13.19□□□□□ -0.3
TCOF1-215ENST00000515516 TPSAB1Q15661 275 aa13.19□□□□□ -0.3
TCOF1-215ENST00000515516 KYNUQ16719 465 aa13.19□□□□□ -0.3
TCOF1-215ENST00000515516 PTCHD3Q3KNS1 767 aa13.19□□□□□ -0.3
TCOF1-215ENST00000515516 ZNF789Q5FWF6 425 aa13.19□□□□□ -0.3
TCOF1-215ENST00000515516 RNF187Q5TA31 235 aaPredicted RBP13.19□□□□□ -0.3
TCOF1-215ENST00000515516 CASC4Q6P4E1 433 aa13.19□□□□□ -0.3
TCOF1-215ENST00000515516 OTOAQ7RTW8 1153 aa13.19□□□□□ -0.3
TCOF1-215ENST00000515516 VRK3Q8IV63 474 aa13.19□□□□□ -0.3
TCOF1-215ENST00000515516 NAP1L3Q99457 506 aaPredicted RBP13.19□□□□□ -0.3
TCOF1-215ENST00000515516 DHRS4Q9BTZ2 278 aa13.19□□□□□ -0.3
TCOF1-215ENST00000515516 KIFC1Q9BW19 673 aa13.19□□□□□ -0.3
TCOF1-215ENST00000515516 ING2Q9H160 280 aa13.19□□□□□ -0.3
TCOF1-215ENST00000515516 EPN3Q9H201 632 aa13.19□□□□□ -0.3
TCOF1-215ENST00000515516 MRM3Q9HC36 420 aaKnown RBP13.19□□□□□ -0.3
TCOF1-215ENST00000515516 FAM60AQ9NP50 221 aa13.19□□□□□ -0.3
TCOF1-215ENST00000515516 TREX1Q9NSU2 369 aa13.19□□□□□ -0.3
TCOF1-215ENST00000515516 TXLNGQ9NUQ3 528 aa13.19□□□□□ -0.3
TCOF1-215ENST00000515516 INTS7Q9NVH2 962 aaKnown RBP13.19□□□□□ -0.3
TCOF1-215ENST00000515516 TCFL5Q9UL49 500 aa13.19□□□□□ -0.3
TCOF1-215ENST00000515516 TTC7AQ9ULT0 858 aaPredicted RBP13.19□□□□□ -0.3
TCOF1-215ENST00000515516 PLCL2Q9UPR0 1127 aa13.19□□□□□ -0.3
TCOF1-215ENST00000515516 H3BMM5 538 aa13.18□□□□□ -0.3
TCOF1-215ENST00000515516 SLCO2B1O94956 709 aa13.18□□□□□ -0.3
TCOF1-215ENST00000515516 S1PR4O95977 384 aa13.18□□□□□ -0.3
TCOF1-215ENST00000515516 CD9P21926 228 aa13.18□□□□□ -0.3
TCOF1-215ENST00000515516 VPS41P49754 854 aa13.18□□□□□ -0.3
TCOF1-215ENST00000515516 PGDP52209 483 aa13.18□□□□□ -0.3
TCOF1-215ENST00000515516 EIF3BP55884 814 aaKnown RBP13.18□□□□□ -0.3
TCOF1-215ENST00000515516 CCZ1BP86790 482 aa13.18□□□□□ -0.3
TCOF1-215ENST00000515516 CCZ1P86791 482 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-215ENST00000515516 GPS1Q13098 491 aa13.18□□□□□ -0.3
TCOF1-215ENST00000515516 IL10RAQ13651 578 aa13.18□□□□□ -0.3
TCOF1-215ENST00000515516 NCF4Q15080 339 aa13.18□□□□□ -0.3
TCOF1-215ENST00000515516 DEFB110Q30KQ9 67 aa13.18□□□□□ -0.3
TCOF1-215ENST00000515516 MLIPQ5VWP3 458 aa13.18□□□□□ -0.3
TCOF1-215ENST00000515516 LCN10Q6JVE6 187 aa13.18□□□□□ -0.3
TCOF1-215ENST00000515516 TLDC1Q6P9B6 456 aa13.18□□□□□ -0.3
TCOF1-215ENST00000515516 RAB43Q86YS6 212 aa13.18□□□□□ -0.3
TCOF1-215ENST00000515516 C2orf73Q8N5S3 287 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-215ENST00000515516 LKAAEAR1Q8TD35 194 aa13.18□□□□□ -0.3
TCOF1-215ENST00000515516 MAGEC3Q8TD91 643 aa13.18□□□□□ -0.3
TCOF1-215ENST00000515516 DENND1AQ8TEH3 1009 aa13.18□□□□□ -0.3
TCOF1-215ENST00000515516 MAGOHBQ96A72 148 aaKnown RBP13.18□□□□□ -0.3
TCOF1-215ENST00000515516 PBKQ96KB5 322 aa13.18□□□□□ -0.3
TCOF1-215ENST00000515516 NDC1Q9BTX1 674 aa13.18□□□□□ -0.3
TCOF1-215ENST00000515516 SLC25A23Q9BV35 468 aa13.18□□□□□ -0.3
TCOF1-215ENST00000515516 RAB11FIP5Q9BXF6 653 aa13.18□□□□□ -0.3
TCOF1-215ENST00000515516 SPRTNQ9H040 489 aaPredicted RBP13.18□□□□□ -0.3
TCOF1-215ENST00000515516 P2RY12Q9H244 342 aa13.18□□□□□ -0.3
TCOF1-215ENST00000515516 SYBUQ9NX95 663 aa13.18□□□□□ -0.3
TCOF1-215ENST00000515516 SAMD15Q9P1V8 674 aa13.18□□□□□ -0.3
TCOF1-215ENST00000515516 NDOR1Q9UHB4 597 aa13.18□□□□□ -0.3
TCOF1-215ENST00000515516 SRPK3Q9UPE1 567 aa13.18□□□□□ -0.3
TCOF1-215ENST00000515516 CDYLQ9Y232 598 aa13.18□□□□□ -0.3
TCOF1-215ENST00000515516 JRKLQ9Y4A0 524 aa13.18□□□□□ -0.3
TCOF1-215ENST00000515516 MAGEB16A2A368 324 aa13.17□□□□□ -0.3
TCOF1-215ENST00000515516 RASGRF2O14827 1237 aa13.17□□□□□ -0.3
TCOF1-215ENST00000515516 ZSCAN9O15535 394 aaPredicted RBP13.17□□□□□ -0.3
TCOF1-215ENST00000515516 DNAJB5O75953 348 aa13.17□□□□□ -0.3
TCOF1-215ENST00000515516 TMEM63AO94886 807 aa13.17□□□□□ -0.3
TCOF1-215ENST00000515516 KRT14P02533 472 aa13.17□□□□□ -0.3
TCOF1-215ENST00000515516 TPBGLP0DKB5 382 aa13.17□□□□□ -0.3
TCOF1-215ENST00000515516 ATXN8OSP0DMR3 200 aa13.17□□□□□ -0.3
TCOF1-215ENST00000515516 NR1D1P20393 614 aa13.17□□□□□ -0.3
TCOF1-215ENST00000515516 RPS3P23396 243 aaKnown RBP eCLIP13.17□□□□□ -0.3
TCOF1-215ENST00000515516 FMO4P31512 558 aa13.17□□□□□ -0.3
TCOF1-215ENST00000515516 RRADP55042 308 aa13.17□□□□□ -0.3
TCOF1-215ENST00000515516 DCDP81605 110 aaKnown RBP13.17□□□□□ -0.3
TCOF1-215ENST00000515516 SF1Q15637 639 aaKnown RBP13.17□□□□□ -0.3
TCOF1-215ENST00000515516 ZIC1Q15915 447 aa13.17□□□□□ -0.3
TCOF1-215ENST00000515516 ZC3H12BQ5HYM0 836 aaKnown RBP13.17□□□□□ -0.3
TCOF1-215ENST00000515516 C1orf189Q5VU69 101 aa13.17□□□□□ -0.3
TCOF1-215ENST00000515516 ARMC3Q5W041 872 aa13.17□□□□□ -0.3
TCOF1-215ENST00000515516 FAM198BQ6UWH4 519 aa13.17□□□□□ -0.3
TCOF1-215ENST00000515516 CES3Q6UWW8 571 aa13.17□□□□□ -0.3
TCOF1-215ENST00000515516 DNAJC22Q8N4W6 341 aa13.17□□□□□ -0.3
TCOF1-215ENST00000515516 ZNF655Q8N720 491 aaPredicted RBP13.17□□□□□ -0.3
TCOF1-215ENST00000515516 PRELID2Q8N945 189 aa13.17□□□□□ -0.3
TCOF1-215ENST00000515516 OR2L8Q8NGY9 312 aa13.17□□□□□ -0.3
TCOF1-215ENST00000515516 PROKR1Q8TCW9 393 aa13.17□□□□□ -0.3
TCOF1-215ENST00000515516 RAD51AP1Q96B01 352 aa13.17□□□□□ -0.3
TCOF1-215ENST00000515516 MFSD3Q96ES6 412 aa13.17□□□□□ -0.3
TCOF1-215ENST00000515516 TCF12Q99081 682 aa13.17□□□□□ -0.3
TCOF1-215ENST00000515516 IFT80Q9P2H3 777 aaPredicted RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms