RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 P2RY12Q9H244 342 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 KAT8Q9H7Z6 458 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 POLE4Q9NR33 117 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 DNMT3LQ9UJW3 386 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 UGT2B11O75310 529 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 EFNA1P20827 205 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 CTGFP29279 349 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 CORO1AP31146 461 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 HPCAL1P37235 193 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 CARD16Q5EG05 197 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 LAIR1Q6GTX8 287 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 PRSS55Q6UWB4 352 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 CEP68Q76N32 757 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 SAPCD2Q86UD0 394 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 ZDHHC21Q8IVQ6 265 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 RPL3LQ92901 407 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 C1orf109Q9NX04 203 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 TRIM43BA6NCK2 446 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 VNN2O95498 520 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 IGFBP5P24593 272 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 S100A3P33764 101 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 CDKN2CP42773 168 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 RGS4P49798 205 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 HUNKP57058 714 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 RAB15P59190 212 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 RHOAP61586 193 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 FAM189BP81408 668 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 EPS8Q12929 822 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 ZNF846Q147U1 533 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 INAQ16352 499 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 ZNF691Q5VV52 312 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 SLC24A5Q71RS6 500 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 SVOPLQ8N434 492 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 CDC26Q8NHZ8 85 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 SKA2Q8WVK7 121 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 CCDC115Q96NT0 180 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 SH3GL1Q99961 368 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 HMG20AQ9NP66 347 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 SACM1LQ9NTJ5 587 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 KRT87PA6NCN2 255 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 GRXCR2A6NFK2 248 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 KPNA4O00629 521 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 ADAM12O43184 909 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 CLDN11O75508 207 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 FADS2O95864 444 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 CD160O95971 181 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 ZNF7P17097 686 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 PCMT1P22061 227 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 FOXD4Q12950 439 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 IRF5Q13568 498 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 CARTPTQ16568 116 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 RTP2Q5QGT7 225 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 ADGRG2Q8IZP9 1017 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 CARNMT1Q8N4J0 409 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 LINC01599Q8WXQ3 324 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 TRIB2Q92519 343 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 PYCR2Q96C36 320 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 RDH12Q96NR8 316 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 HERC2P3Q9BVR0 1158 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 ARHGAP39Q9C0H5 1083 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 PALMDQ9NP74 551 aa9.05□□□□□ -0.96
LIMCH1-215ENST00000512632 SLC38A8A6NNN8 435 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 GLUD1P00367 558 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 IL6P05231 212 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 PAX3P23760 479 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 TMED10P49755 219 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 CACNG1Q06432 222 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 DOK6Q6PKX4 331 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 TAS1R1Q7RTX1 841 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 ADCK1Q86TW2 530 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 ZCCHC7Q8N3Z6 543 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 ALPK1Q96QP1 1244 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 CD244Q9BZW8 370 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 IFRD1O00458 451 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 MT-ND2P03891 347 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 EPB42P16452 691 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 ATF6P18850 670 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 ITIH1P19827 911 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 SLC14A1Q13336 389 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 GPR149Q86SP6 731 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 ANKRD13BQ86YJ7 626 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 RNF175Q8N4F7 328 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 SELENOMQ8WWX9 145 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 PYURFQ96I23 114 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 USE1Q9NZ43 259 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 GPRC5BQ9NZH0 403 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 GABRQQ9UN88 632 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 ABCG2Q9UNQ0 655 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 COL4A4P53420 1690 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 TMEM221A6NGB7 291 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 MANBAO00462 879 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 BNIP3LO60238 219 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 RPS14P62263 151 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 GSTM4Q03013 218 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 TOP3AQ13472 1001 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 CPZQ66K79 652 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 NCCRP1Q6ZVX7 275 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 VTCN1Q7Z7D3 282 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 STK40Q8N2I9 435 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 ZNF540Q8NDQ6 660 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms