RNA–Protein interactions for RNA: ENST00000474215.5

CKS1B-206, Transcript of CDC28 protein kinase regulatory subunit 1B, human

TSL 3

Gene CKS1B, Length 739 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CKS1B-206	ENST00000474215	SLC38A9	Q8NBW4	561 aa		10.81	□□□□□ -0.68
CKS1B-206	ENST00000474215	OR1L3	Q8NH93	324 aa		10.81	□□□□□ -0.68
CKS1B-206	ENST00000474215	FLVCR1-AS1	Q8TAF5	88 aa		10.81	□□□□□ -0.68
CKS1B-206	ENST00000474215	CT55	Q8WUE5	264 aa		10.81	□□□□□ -0.68
CKS1B-206	ENST00000474215	SKA2	Q8WVK7	121 aa	Predicted RBP	10.81	□□□□□ -0.68
CKS1B-206	ENST00000474215	SLCO2A1	Q92959	643 aa		10.81	□□□□□ -0.68
CKS1B-206	ENST00000474215	ZNF669	Q96BR6	464 aa	Predicted RBP	10.81	□□□□□ -0.68
CKS1B-206	ENST00000474215	SIGLEC10	Q96LC7	697 aa		10.81	□□□□□ -0.68
CKS1B-206	ENST00000474215	LRFN5	Q96NI6	719 aa		10.81	□□□□□ -0.68
CKS1B-206	ENST00000474215	GPR87	Q9BY21	358 aa		10.81	□□□□□ -0.68
CKS1B-206	ENST00000474215	CHRNA10	Q9GZZ6	450 aa		10.81	□□□□□ -0.68
CKS1B-206	ENST00000474215	DDX47	Q9H0S4	455 aa	Known RBP	10.81	□□□□□ -0.68
CKS1B-206	ENST00000474215	GEMIN8	Q9NWZ8	242 aa	Known RBP	10.81	□□□□□ -0.68
CKS1B-206	ENST00000474215	PCYOX1	Q9UHG3	505 aa		10.81	□□□□□ -0.68
CKS1B-206	ENST00000474215	VPS9D1	Q9Y2B5	631 aa		10.81	□□□□□ -0.68
CKS1B-206	ENST00000474215	CRYL1	Q9Y2S2	319 aa		10.81	□□□□□ -0.68
CKS1B-206	ENST00000474215	MRPS18B	Q9Y676	258 aa	Known RBP	10.81	□□□□□ -0.68
CKS1B-206	ENST00000474215	MAD1L1	Q9Y6D9	718 aa		10.81	□□□□□ -0.68
CKS1B-206	ENST00000474215	BOD1L1	Q8NFC6	3051 aa		10.81	□□□□□ -0.68
CKS1B-206	ENST00000474215	SMG1	Q96Q15	3661 aa	Known RBP	10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215		B8ZZF3	427 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	MEN1	O00255	615 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	NIPSNAP2	O75323	286 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	CREG1	O75629	220 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	CHRM3	P20309	590 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	CYP2A7	P20853	494 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	CD9	P21926	228 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	OAS2	P29728	719 aa	Known RBP	10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	PKLR	P30613	574 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	RPS15	P62841	145 aa	Known RBP	10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	GPS2	Q13227	327 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	THOC5	Q13769	683 aa	Known RBP	10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	ERV3-1	Q14264	604 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	ZIC1	Q15915	447 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	SLC5A12	Q1EHB4	618 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	DEFB109B	Q30KR1	87 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	ZNF789	Q5FWF6	425 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	RNASEH2B	Q5TBB1	312 aa	Known RBP	10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	ATP1A1-AS1	Q5TC04	95 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	PRAMEF17	Q5VTA0	474 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	PAPD7	Q5XG87	772 aa	Known RBP	10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	ZNF517	Q6ZMY9	492 aa	Predicted RBP	10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	PCGF5	Q86SE9	256 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	CREG2	Q8IUH2	290 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	AGGF1	Q8N302	714 aa	eCLIP	10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	C19orf47	Q8N9M1	422 aa	Known RBP	10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	LINC01555	Q8NAE3	123 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	APOBEC4	Q8WW27	367 aa	Known RBP	10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	N4BP2L2	Q92802	583 aa	Predicted RBP	10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	MR1	Q95460	341 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	RAD51AP1	Q96B01	352 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	SLC22A18	Q96BI1	424 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	CLIP3	Q96DZ5	547 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	MENT	Q9BUN1	341 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	FAM117A	Q9C073	453 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	ADNP	Q9H2P0	1102 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	FAM60A	Q9NP50	221 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	INTS10	Q9NVR2	710 aa	Known RBP	10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	IL1RAPL1	Q9NZN1	696 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	ASIC3	Q9UHC3	531 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	CIDEB	Q9UHD4	219 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	SLC39A10	Q9ULF5	831 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	MRFAP1	Q9Y605	127 aa		10.8	□□□□□ -0.68
CKS1B-206	ENST00000474215	GCN1	Q92616	2671 aa	Known RBP	10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215		A0A0J9YY10	115 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	CTAGE9	A4FU28	777 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	RASGRF2	O14827	1237 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	USP1	O94782	785 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	MATN4	O95460	622 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	C1orf105	O95561	183 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	PKM	P14618	531 aa	Known RBP	10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	PTPN4	P29074	926 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	ATP5D	P30049	168 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	PEBP1	P30086	187 aa	Known RBP	10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	CCNF	P41002	786 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	PTGIR	P43119	386 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	GABRA4	P48169	554 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	ITGA1	P56199	1179 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	POLE2	P56282	527 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	KCNAB2	Q13303	367 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	PTK6	Q13882	451 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	GBX1	Q14549	363 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	LONRF1	Q17RB8	773 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	ZNF470	Q6ECI4	717 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	LMNTD2	Q8IXW0	634 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	GPR135	Q8IZ08	494 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	DSEL	Q8IZU8	1212 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	C2orf73	Q8N5S3	287 aa	Predicted RBP	10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	ZBTB2	Q8N680	514 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	OR2L8	Q8NGY9	312 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	SEC14L1	Q92503	715 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	FAM136A	Q96C01	138 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	CAPZA3	Q96KX2	299 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	FOPNL	Q96NB1	174 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	IL17F	Q96PD4	163 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	RUFY1	Q96T51	708 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	RAB11FIP5	Q9BXF6	653 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	CHST8	Q9H2A9	424 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	ACTL8	Q9H568	366 aa		10.79	□□□□□ -0.68
CKS1B-206	ENST00000474215	ACTR5	Q9H9F9	607 aa	Predicted RBP	10.79	□□□□□ -0.68

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