RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 LRRC57Q8N9N7 239 aa14□□□□□ -0.17
SDC1-204ENST00000429035 Q8NA96 180 aa14□□□□□ -0.17
SDC1-204ENST00000429035 GLIS1Q8NBF1 620 aa14□□□□□ -0.17
SDC1-204ENST00000429035 OR5K2Q8NHB8 316 aa14□□□□□ -0.17
SDC1-204ENST00000429035 CFAP61Q8NHU2 1237 aa14□□□□□ -0.17
SDC1-204ENST00000429035 PRR7Q8TB68 274 aa14□□□□□ -0.17
SDC1-204ENST00000429035 ATG4AQ8WYN0 398 aa14□□□□□ -0.17
SDC1-204ENST00000429035 PNPLA2Q96AD5 504 aa14□□□□□ -0.17
SDC1-204ENST00000429035 FER1L6-AS2Q96M78 137 aa14□□□□□ -0.17
SDC1-204ENST00000429035 NDC1Q9BTX1 674 aa14□□□□□ -0.17
SDC1-204ENST00000429035 POLG2Q9UHN1 485 aa14□□□□□ -0.17
SDC1-204ENST00000429035 SRPK3Q9UPE1 567 aa14□□□□□ -0.17
SDC1-204ENST00000429035 AP1M2Q9Y6Q5 423 aa14□□□□□ -0.17
SDC1-204ENST00000429035 MDC1Q14676 2089 aaKnown RBP14□□□□□ -0.17
SDC1-204ENST00000429035 HIVEP3Q5T1R4 2406 aa13.99□□□□□ -0.17
SDC1-204ENST00000429035 BTNL10A8MVZ5 291 aa13.99□□□□□ -0.17
SDC1-204ENST00000429035 TCP11X1B4DZS4 312 aa13.99□□□□□ -0.17
SDC1-204ENST00000429035 F8W8V4 182 aa13.99□□□□□ -0.17
SDC1-204ENST00000429035 MASP2O00187 686 aa13.99□□□□□ -0.17
SDC1-204ENST00000429035 KRT86O43790 486 aa13.99□□□□□ -0.17
SDC1-204ENST00000429035 OR1I1O60431 355 aa13.99□□□□□ -0.17
SDC1-204ENST00000429035 SEMA7AO75326 666 aa13.99□□□□□ -0.17
SDC1-204ENST00000429035 GOT2P00505 430 aaKnown RBP13.99□□□□□ -0.17
SDC1-204ENST00000429035 IFNB1P01574 187 aa13.99□□□□□ -0.17
SDC1-204ENST00000429035 RNF224P0DH78 156 aa13.99□□□□□ -0.17
SDC1-204ENST00000429035 ACADLP28330 430 aa13.99□□□□□ -0.17
SDC1-204ENST00000429035 PEBP1P30086 187 aaKnown RBP13.99□□□□□ -0.17
SDC1-204ENST00000429035 DCDP81605 110 aaKnown RBP13.99□□□□□ -0.17
SDC1-204ENST00000429035 CDH17Q12864 832 aa13.99□□□□□ -0.17
SDC1-204ENST00000429035 EIF2S3LQ2VIR3 472 aaKnown RBP13.99□□□□□ -0.17
SDC1-204ENST00000429035 RHBDD2Q6NTF9 364 aa13.99□□□□□ -0.17
SDC1-204ENST00000429035 PACS1Q6VY07 963 aa13.99□□□□□ -0.17
SDC1-204ENST00000429035 LINC00523Q86TU6 105 aa13.99□□□□□ -0.17
SDC1-204ENST00000429035 HPS6Q86YV9 775 aa13.99□□□□□ -0.17
SDC1-204ENST00000429035 SYCE1Q8N0S2 351 aa13.99□□□□□ -0.17
SDC1-204ENST00000429035 LMNTD1Q8N9Z9 388 aa13.99□□□□□ -0.17
SDC1-204ENST00000429035 PROKR1Q8TCW9 393 aa13.99□□□□□ -0.17
SDC1-204ENST00000429035 HDAC10Q969S8 669 aa13.99□□□□□ -0.17
SDC1-204ENST00000429035 GBP5Q96PP8 586 aa13.99□□□□□ -0.17
SDC1-204ENST00000429035 TTC1Q99614 292 aa13.99□□□□□ -0.17
SDC1-204ENST00000429035 ILKAPQ9H0C8 392 aaPredicted RBP13.99□□□□□ -0.17
SDC1-204ENST00000429035 OR6C2Q9NZP2 312 aa13.99□□□□□ -0.17
SDC1-204ENST00000429035 SLC2A6Q9UGQ3 507 aa13.99□□□□□ -0.17
SDC1-204ENST00000429035 KLHL20Q9Y2M5 609 aa13.99□□□□□ -0.17
SDC1-204ENST00000429035 NBPF19A0A087WUL8 3843 aa13.99□□□□□ -0.17
SDC1-204ENST00000429035 DOCK10Q96BY6 2186 aa13.98□□□□□ -0.17
SDC1-204ENST00000429035 TCRBV7S2A1N4TA0A589 114 aa13.98□□□□□ -0.17
SDC1-204ENST00000429035 SLC5A10A0PJK1 596 aa13.98□□□□□ -0.17
SDC1-204ENST00000429035 HEATR9A2RTY3 570 aa13.98□□□□□ -0.17
SDC1-204ENST00000429035 MIF4GDA9UHW6 222 aaKnown RBP13.98□□□□□ -0.17
SDC1-204ENST00000429035 ALOX12BO75342 701 aa13.98□□□□□ -0.17
SDC1-204ENST00000429035 ALPPP05187 535 aa13.98□□□□□ -0.17
SDC1-204ENST00000429035 MAGP20916 626 aa13.98□□□□□ -0.17
SDC1-204ENST00000429035 ALAS2P22557 587 aa13.98□□□□□ -0.17
SDC1-204ENST00000429035 PKLRP30613 574 aa13.98□□□□□ -0.17
SDC1-204ENST00000429035 PRAMEP78395 509 aa13.98□□□□□ -0.17
SDC1-204ENST00000429035 HSPA14Q0VDF9 509 aa13.98□□□□□ -0.17
SDC1-204ENST00000429035 SSPNQ14714 243 aa13.98□□□□□ -0.17
SDC1-204ENST00000429035 NR6A1Q15406 480 aa13.98□□□□□ -0.17
SDC1-204ENST00000429035 SLC5A12Q1EHB4 618 aa13.98□□□□□ -0.17
SDC1-204ENST00000429035 SEL1L2Q5TEA6 688 aa13.98□□□□□ -0.17
SDC1-204ENST00000429035 LYPLAL1Q5VWZ2 237 aa13.98□□□□□ -0.17
SDC1-204ENST00000429035 IQCKQ8N0W5 287 aa13.98□□□□□ -0.17
SDC1-204ENST00000429035 GALNT16Q8N428 558 aa13.98□□□□□ -0.17
SDC1-204ENST00000429035 OR6P1Q8NGX9 317 aa13.98□□□□□ -0.17
SDC1-204ENST00000429035 LKAAEAR1Q8TD35 194 aa13.98□□□□□ -0.17
SDC1-204ENST00000429035 IP6K3Q96PC2 410 aa13.98□□□□□ -0.17
SDC1-204ENST00000429035 IL17FQ96PD4 163 aa13.98□□□□□ -0.17
SDC1-204ENST00000429035 SMAD5Q99717 465 aaKnown RBP13.98□□□□□ -0.17
SDC1-204ENST00000429035 DESI2Q9BSY9 194 aa13.98□□□□□ -0.17
SDC1-204ENST00000429035 TSSK1BQ9BXA7 367 aa13.98□□□□□ -0.17
SDC1-204ENST00000429035 AP1M1Q9BXS5 423 aa13.98□□□□□ -0.17
SDC1-204ENST00000429035 P4HTMQ9NXG6 502 aa13.98□□□□□ -0.17
SDC1-204ENST00000429035 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.98□□□□□ -0.17
SDC1-204ENST00000429035 PLCL2Q9UPR0 1127 aa13.98□□□□□ -0.17
SDC1-204ENST00000429035 A0A0U1RQJ8 604 aa13.97□□□□□ -0.17
SDC1-204ENST00000429035 MROH6A6NGR9 719 aa13.97□□□□□ -0.17
SDC1-204ENST00000429035 IQCF5A8MTL0 148 aa13.97□□□□□ -0.17
SDC1-204ENST00000429035 BHMG1C9JSJ3 638 aaPredicted RBP13.97□□□□□ -0.17
SDC1-204ENST00000429035 KLF7O75840 302 aaPredicted RBP13.97□□□□□ -0.17
SDC1-204ENST00000429035 ITGA3P26006 1051 aa13.97□□□□□ -0.17
SDC1-204ENST00000429035 GABRA4P48169 554 aa13.97□□□□□ -0.17
SDC1-204ENST00000429035 PLOD1Q02809 727 aaPredicted RBP13.97□□□□□ -0.17
SDC1-204ENST00000429035 KIF5AQ12840 1032 aa13.97□□□□□ -0.17
SDC1-204ENST00000429035 KLF1Q13351 362 aaPredicted RBP13.97□□□□□ -0.17
SDC1-204ENST00000429035 KIR2DS3Q14952 304 aa13.97□□□□□ -0.17
SDC1-204ENST00000429035 TMED2Q15363 201 aa13.97□□□□□ -0.17
SDC1-204ENST00000429035 NKAIN1Q4KMZ8 207 aa13.97□□□□□ -0.17
SDC1-204ENST00000429035 FASTKD1Q53R41 847 aaKnown RBP13.97□□□□□ -0.17
SDC1-204ENST00000429035 DCAF10Q5QP82 559 aa13.97□□□□□ -0.17
SDC1-204ENST00000429035 TSTD2Q5T7W7 516 aa13.97□□□□□ -0.17
SDC1-204ENST00000429035 TLDC1Q6P9B6 456 aa13.97□□□□□ -0.17
SDC1-204ENST00000429035 KRT222Q8N1A0 295 aa13.97□□□□□ -0.17
SDC1-204ENST00000429035 CISD2Q8N5K1 135 aaKnown RBP13.97□□□□□ -0.17
SDC1-204ENST00000429035 METTL27Q8N6F8 245 aaPredicted RBP13.97□□□□□ -0.17
SDC1-204ENST00000429035 OTUD6BQ8N6M0 293 aa13.97□□□□□ -0.17
SDC1-204ENST00000429035 OR13J1Q8NGT2 312 aa13.97□□□□□ -0.17
SDC1-204ENST00000429035 OR2Y1Q8NGV0 311 aa13.97□□□□□ -0.17
SDC1-204ENST00000429035 FLVCR1-AS1Q8TAF5 88 aa13.97□□□□□ -0.17
SDC1-204ENST00000429035 SLC35B2Q8TB61 432 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms