RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 ZFR2Q9UPR6 939 aaKnown RBP12.86□□□□□ -0.35
SQSTM1-201ENST00000360718 TCRBV3S1A0A5B6 114 aa12.86□□□□□ -0.35
SQSTM1-201ENST00000360718 VILLO15195 856 aa12.86□□□□□ -0.35
SQSTM1-201ENST00000360718 SGTAO43765 313 aa12.86□□□□□ -0.35
SQSTM1-201ENST00000360718 CBSLP0DN79 551 aa12.86□□□□□ -0.35
SQSTM1-201ENST00000360718 ATP6V1B1P15313 513 aa12.86□□□□□ -0.35
SQSTM1-201ENST00000360718 NDUFV2P19404 249 aa12.86□□□□□ -0.35
SQSTM1-201ENST00000360718 CBSP35520 551 aa12.86□□□□□ -0.35
SQSTM1-201ENST00000360718 RPS21P63220 83 aaKnown RBP12.86□□□□□ -0.35
SQSTM1-201ENST00000360718 TXNL4AP83876 142 aaKnown RBP12.86□□□□□ -0.35
SQSTM1-201ENST00000360718 NFKB2Q00653 900 aa12.86□□□□□ -0.35
SQSTM1-201ENST00000360718 FZD5Q13467 585 aa12.86□□□□□ -0.35
SQSTM1-201ENST00000360718 FGL2Q14314 439 aa12.86□□□□□ -0.35
SQSTM1-201ENST00000360718 GAS6Q14393 721 aa12.86□□□□□ -0.35
SQSTM1-201ENST00000360718 OR4D1Q15615 310 aa12.86□□□□□ -0.35
SQSTM1-201ENST00000360718 TMEM31Q5JXX7 168 aa12.86□□□□□ -0.35
SQSTM1-201ENST00000360718 ZNF678Q5SXM1 525 aa12.86□□□□□ -0.35
SQSTM1-201ENST00000360718 LARP4Q71RC2 724 aaKnown RBP eCLIP12.86□□□□□ -0.353e-11■□□□□ 8.9
SQSTM1-201ENST00000360718 TRIM74Q86UV6 250 aa12.86□□□□□ -0.35
SQSTM1-201ENST00000360718 DHFR2Q86XF0 187 aa12.86□□□□□ -0.35
SQSTM1-201ENST00000360718 PLA2G15Q8NCC3 412 aa12.86□□□□□ -0.35
SQSTM1-201ENST00000360718 UHRF1Q96T88 793 aaPredicted RBP12.86□□□□□ -0.35
SQSTM1-201ENST00000360718 HOPXQ9BPY8 73 aaPredicted RBP12.86□□□□□ -0.35
SQSTM1-201ENST00000360718 TRIM15Q9C019 465 aa12.86□□□□□ -0.35
SQSTM1-201ENST00000360718 PCDHAC1Q9H158 963 aa12.86□□□□□ -0.35
SQSTM1-201ENST00000360718 COQ10BQ9H8M1 238 aa12.86□□□□□ -0.35
SQSTM1-201ENST00000360718 TMCO1Q9UM00 188 aa12.86□□□□□ -0.35
SQSTM1-201ENST00000360718 NPEPPSL1A6NEC2 478 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 PRR23AA6NEV1 266 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 SUPT3HB4E1H0 165 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 PDLIM1O00151 329 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 SUPT3HO75486 399 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 GFAPP14136 432 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 PRKCQQ04759 706 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 TMEM115Q12893 351 aaPredicted RBP12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 SGCGQ13326 291 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 APOFQ13790 326 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 TSNQ15631 228 aaKnown RBP12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 KIAA1161Q6NSJ0 714 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 FRA10AC1Q70Z53 315 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 ADAMTSL2Q86TH1 951 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 HMGCLL1Q8TB92 370 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 LRTOMTQ8WZ04 291 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 C1QTNF7Q9BXJ2 289 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 OSBPL6Q9BZF3 934 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 GRIP2Q9C0E4 1043 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 FZD4Q9ULV1 537 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 NDUFAF1Q9Y375 327 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 SNX13Q9Y5W8 968 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 TCRBV21S2A2A0A5A6 115 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 PRORSD1PA6NEY8 169 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 EIF3FO00303 357 aaPredicted RBP12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 CDC7O00311 574 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 PLRG1O43660 514 aaKnown RBP12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 ATG13O75143 517 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 C7P10643 843 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 GABRG2P18507 467 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 HERVK_113P63132 956 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 GTF2H3Q13889 308 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 PPP1R3AQ16821 1122 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 KIAA1324Q6UXG2 1013 aaKnown RBP12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 USP30Q70CQ3 517 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 ARHGAP22Q7Z5H3 698 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 GPSM1Q86YR5 675 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 KLK6Q92876 244 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 ZUFSPQ96AP4 578 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 C19orf60Q96EN9 201 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 ATOH8Q96SQ7 321 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 ERVK-6Q9BXR3 956 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 FOXQ1Q9C009 403 aa12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 TSR3Q9UJK0 312 aaKnown RBP12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 MRPS17Q9Y2R5 130 aaKnown RBP12.85□□□□□ -0.35
SQSTM1-201ENST00000360718 ZFC3H1O60293 1989 aaKnown RBP12.84□□□□□ -0.35
SQSTM1-201ENST00000360718 OR2AG2A6NM03 316 aa12.84□□□□□ -0.35
SQSTM1-201ENST00000360718 UBXN8O00124 270 aa12.84□□□□□ -0.35
SQSTM1-201ENST00000360718 SNX2O60749 519 aa12.84□□□□□ -0.35
SQSTM1-201ENST00000360718 FGF4P08620 206 aa12.84□□□□□ -0.35
SQSTM1-201ENST00000360718 ADPRHP54922 357 aa12.84□□□□□ -0.35
SQSTM1-201ENST00000360718 BOP1Q14137 746 aaKnown RBP12.84□□□□□ -0.35
SQSTM1-201ENST00000360718 LRRC32Q14392 662 aa12.84□□□□□ -0.35
SQSTM1-201ENST00000360718 AGERQ15109 404 aa12.84□□□□□ -0.35
SQSTM1-201ENST00000360718 NRF1Q16656 503 aa12.84□□□□□ -0.35
SQSTM1-201ENST00000360718 KIF19Q2TAC6 998 aa12.84□□□□□ -0.35
SQSTM1-201ENST00000360718 PLEKHS1Q5SXH7 462 aa12.84□□□□□ -0.35
SQSTM1-201ENST00000360718 C8orf82Q6P1X6 216 aaPredicted RBP12.84□□□□□ -0.35
SQSTM1-201ENST00000360718 FAM124AQ86V42 546 aa12.84□□□□□ -0.35
SQSTM1-201ENST00000360718 CHERPQ8IWX8 916 aaKnown RBP12.84□□□□□ -0.35
SQSTM1-201ENST00000360718 FBXO39Q8N4B4 442 aa12.84□□□□□ -0.35
SQSTM1-201ENST00000360718 TRIML2Q8N7C3 387 aa12.84□□□□□ -0.35
SQSTM1-201ENST00000360718 BEND7Q8N7W2 519 aaPredicted RBP12.84□□□□□ -0.35
SQSTM1-201ENST00000360718 DRAXINQ8NBI3 349 aaPredicted RBP12.84□□□□□ -0.35
SQSTM1-201ENST00000360718 ZFP28Q8NHY6 868 aa12.84□□□□□ -0.35
SQSTM1-201ENST00000360718 ASZ1Q8WWH4 475 aa12.84□□□□□ -0.35
SQSTM1-201ENST00000360718 ELMO1Q92556 727 aa12.84□□□□□ -0.35
SQSTM1-201ENST00000360718 PPWD1Q96BP3 646 aaKnown RBP12.84□□□□□ -0.35
SQSTM1-201ENST00000360718 FAM126AQ9BYI3 521 aaPredicted RBP12.84□□□□□ -0.35
SQSTM1-201ENST00000360718 SEMA6AQ9H2E6 1030 aa12.84□□□□□ -0.35
SQSTM1-201ENST00000360718 TRIM39Q9HCM9 518 aa12.84□□□□□ -0.35
SQSTM1-201ENST00000360718 PREBQ9HCU5 417 aa12.84□□□□□ -0.35
SQSTM1-201ENST00000360718 ARMC1Q9NVT9 282 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms