RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 FER1L5A0AVI2 2057 aa18.85■□□□□ 0.61
LIME1-201ENST00000309546 C9J4A7 227 aa18.84■□□□□ 0.61
LIME1-201ENST00000309546 HCRTR1O43613 425 aa18.84■□□□□ 0.61
LIME1-201ENST00000309546 NDUFS3O75489 264 aa18.84■□□□□ 0.61
LIME1-201ENST00000309546 RPN2P04844 631 aa18.84■□□□□ 0.61
LIME1-201ENST00000309546 HBQ1P09105 142 aa18.84■□□□□ 0.61
LIME1-201ENST00000309546 AGXTP21549 392 aa18.84■□□□□ 0.61
LIME1-201ENST00000309546 MGAT1P26572 445 aa18.84■□□□□ 0.61
LIME1-201ENST00000309546 PEBP1P30086 187 aaKnown RBP18.84■□□□□ 0.61
LIME1-201ENST00000309546 PKLRP30613 574 aa18.84■□□□□ 0.61
LIME1-201ENST00000309546 PTGIRP43119 386 aa18.84■□□□□ 0.61
LIME1-201ENST00000309546 KIR2DS3Q14952 304 aa18.84■□□□□ 0.61
LIME1-201ENST00000309546 TRIP13Q15645 432 aaPredicted RBP18.84■□□□□ 0.61
LIME1-201ENST00000309546 FAM20CQ8IXL6 584 aa18.84■□□□□ 0.61
LIME1-201ENST00000309546 C2orf73Q8N5S3 287 aaPredicted RBP18.84■□□□□ 0.61
LIME1-201ENST00000309546 LMNTD1Q8N9Z9 388 aa18.84■□□□□ 0.61
LIME1-201ENST00000309546 TEX19Q8NA77 164 aa18.84■□□□□ 0.61
LIME1-201ENST00000309546 FLVCR1-AS1Q8TAF5 88 aa18.84■□□□□ 0.61
LIME1-201ENST00000309546 GSDMBQ8TAX9 411 aa18.84■□□□□ 0.61
LIME1-201ENST00000309546 SPRTNQ9H040 489 aaPredicted RBP18.84■□□□□ 0.61
LIME1-201ENST00000309546 SYBUQ9NX95 663 aa18.84■□□□□ 0.61
LIME1-201ENST00000309546 GNPTGQ9UJJ9 305 aa18.84■□□□□ 0.61
LIME1-201ENST00000309546 TCFL5Q9UL49 500 aa18.84■□□□□ 0.61
LIME1-201ENST00000309546 NRDCO43847 1150 aa18.83■□□□□ 0.6
LIME1-201ENST00000309546 GPC4O75487 556 aa18.83■□□□□ 0.6
LIME1-201ENST00000309546 PDGFAP04085 211 aa18.83■□□□□ 0.6
LIME1-201ENST00000309546 NPY2RP49146 381 aa18.83■□□□□ 0.6
LIME1-201ENST00000309546 VPS41P49754 854 aa18.83■□□□□ 0.6
LIME1-201ENST00000309546 RAB28P51157 221 aa18.83■□□□□ 0.6
LIME1-201ENST00000309546 CCL11P51671 97 aa18.83■□□□□ 0.6
LIME1-201ENST00000309546 CCZ1BP86790 482 aa18.83■□□□□ 0.6
LIME1-201ENST00000309546 CCZ1P86791 482 aaPredicted RBP18.83■□□□□ 0.6
LIME1-201ENST00000309546 NCF4Q15080 339 aa18.83■□□□□ 0.6
LIME1-201ENST00000309546 IGFBP7Q16270 282 aa18.83■□□□□ 0.6
LIME1-201ENST00000309546 SLC5A12Q1EHB4 618 aa18.83■□□□□ 0.6
LIME1-201ENST00000309546 C1orf189Q5VU69 101 aa18.83■□□□□ 0.6
LIME1-201ENST00000309546 CES3Q6UWW8 571 aa18.83■□□□□ 0.6
LIME1-201ENST00000309546 DCUN1D3Q8IWE4 304 aa18.83■□□□□ 0.6
LIME1-201ENST00000309546 SKA2Q8WVK7 121 aaPredicted RBP18.83■□□□□ 0.6
LIME1-201ENST00000309546 IL17FQ96PD4 163 aa18.83■□□□□ 0.6
LIME1-201ENST00000309546 PANX3Q96QZ0 392 aa18.83■□□□□ 0.6
LIME1-201ENST00000309546 ING2Q9H160 280 aa18.83■□□□□ 0.6
LIME1-201ENST00000309546 KLHL20Q9Y2M5 609 aa18.83■□□□□ 0.6
LIME1-201ENST00000309546 MED13Q9UHV7 2174 aa18.83■□□□□ 0.6
LIME1-201ENST00000309546 AP3B1O00203 1094 aa18.82■□□□□ 0.6
LIME1-201ENST00000309546 CAPN1P07384 714 aa18.82■□□□□ 0.6
LIME1-201ENST00000309546 CTSBP07858 339 aa18.82■□□□□ 0.6
LIME1-201ENST00000309546 CBSLP0DN79 551 aa18.82■□□□□ 0.6
LIME1-201ENST00000309546 AOAHP28039 575 aa18.82■□□□□ 0.6
LIME1-201ENST00000309546 CBSP35520 551 aa18.82■□□□□ 0.6
LIME1-201ENST00000309546 GABRA4P48169 554 aa18.82■□□□□ 0.6
LIME1-201ENST00000309546 EIF3BP55884 814 aaKnown RBP18.82■□□□□ 0.6
LIME1-201ENST00000309546 UNC5DQ6UXZ4 953 aa18.82■□□□□ 0.6
LIME1-201ENST00000309546 MPP5Q8N3R9 675 aa18.82■□□□□ 0.6
LIME1-201ENST00000309546 ADAMTS17Q8TE56 1095 aa18.82■□□□□ 0.6
LIME1-201ENST00000309546 MFSD3Q96ES6 412 aa18.82■□□□□ 0.6
LIME1-201ENST00000309546 DPH2Q9BQC3 489 aaPredicted RBP18.82■□□□□ 0.6
LIME1-201ENST00000309546 SLC25A23Q9BV35 468 aa18.82■□□□□ 0.6
LIME1-201ENST00000309546 P2RY12Q9H244 342 aa18.82■□□□□ 0.6
LIME1-201ENST00000309546 HOMER3Q9NSC5 361 aa18.82■□□□□ 0.6
LIME1-201ENST00000309546 TSR3Q9UJK0 312 aaKnown RBP18.82■□□□□ 0.6
LIME1-201ENST00000309546 PADI2Q9Y2J8 665 aa18.82■□□□□ 0.6
LIME1-201ENST00000309546 AP1M2Q9Y6Q5 423 aa18.82■□□□□ 0.6
LIME1-201ENST00000309546 CCDC88CQ9P219 2028 aa18.82■□□□□ 0.6
LIME1-201ENST00000309546 SEC16AO15027 2179 aa18.81■□□□□ 0.6
LIME1-201ENST00000309546 TCRBV7S3A2A0A539 114 aa18.81■□□□□ 0.6
LIME1-201ENST00000309546 GOLGA8KD6RF30 607 aa18.81■□□□□ 0.6
LIME1-201ENST00000309546 GOLGA8TH3BQL2 631 aa18.81■□□□□ 0.6
LIME1-201ENST00000309546 ZSCAN9O15535 394 aaPredicted RBP18.81■□□□□ 0.6
LIME1-201ENST00000309546 TMEM63AO94886 807 aa18.81■□□□□ 0.6
LIME1-201ENST00000309546 TPSB2P20231 275 aa18.81■□□□□ 0.6
LIME1-201ENST00000309546 MAGP20916 626 aa18.81■□□□□ 0.6
LIME1-201ENST00000309546 CD9P21926 228 aa18.81■□□□□ 0.6
LIME1-201ENST00000309546 PGDP52209 483 aa18.81■□□□□ 0.6
LIME1-201ENST00000309546 SLC9A5Q14940 896 aa18.81■□□□□ 0.6
LIME1-201ENST00000309546 TPSAB1Q15661 275 aa18.81■□□□□ 0.6
LIME1-201ENST00000309546 KYNUQ16719 465 aa18.81■□□□□ 0.6
LIME1-201ENST00000309546 MLIPQ5VWP3 458 aa18.81■□□□□ 0.6
LIME1-201ENST00000309546 LRRC8BQ6P9F7 803 aa18.81■□□□□ 0.6
LIME1-201ENST00000309546 ZNF655Q8N720 491 aaPredicted RBP18.81■□□□□ 0.6
LIME1-201ENST00000309546 PRELID2Q8N945 189 aa18.81■□□□□ 0.6
LIME1-201ENST00000309546 LINC01555Q8NAE3 123 aa18.81■□□□□ 0.6
LIME1-201ENST00000309546 ASH1LQ9NR48 2969 aaKnown RBP18.81■□□□□ 0.6
LIME1-201ENST00000309546 TXLNGQ9NUQ3 528 aa18.81■□□□□ 0.6
LIME1-201ENST00000309546 CAMSAP3Q9P1Y5 1249 aaPredicted RBP18.81■□□□□ 0.6
LIME1-201ENST00000309546 GPN3Q9UHW5 284 aaPredicted RBP18.81■□□□□ 0.6
LIME1-201ENST00000309546 SLC39A10Q9ULF5 831 aa18.81■□□□□ 0.6
LIME1-201ENST00000309546 RUVBL2Q9Y230 463 aaKnown RBP18.81■□□□□ 0.6
LIME1-201ENST00000309546 PPP2R2CQ9Y2T4 447 aa18.81■□□□□ 0.6
LIME1-201ENST00000309546 SLCO2B1O94956 709 aa18.8■□□□□ 0.6
LIME1-201ENST00000309546 VAPBO95292 243 aa18.8■□□□□ 0.6
LIME1-201ENST00000309546 RPS3P23396 243 aaKnown RBP eCLIP18.8■□□□□ 0.62e-11■■□□□ 11.8
LIME1-201ENST00000309546 OTX2P32243 289 aa18.8■□□□□ 0.6
LIME1-201ENST00000309546 BDKRB1P46663 353 aa18.8■□□□□ 0.6
LIME1-201ENST00000309546 FOXK1P85037 733 aa18.8■□□□□ 0.6
LIME1-201ENST00000309546 GPS1Q13098 491 aa18.8■□□□□ 0.6
LIME1-201ENST00000309546 ZNF385CQ66K41 422 aaPredicted RBP18.8■□□□□ 0.6
LIME1-201ENST00000309546 OTOAQ7RTW8 1153 aa18.8■□□□□ 0.6
LIME1-201ENST00000309546 LRRC6Q86X45 466 aa18.8■□□□□ 0.6
LIME1-201ENST00000309546 RAB43Q86YS6 212 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms