RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 UGT1A3P35503 534 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 ZNF135P52742 658 aaPredicted RBP4.35□□□□□ -1.71
LINC00540-201ENST00000611481 MFAP3P55082 362 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 TSPY1Q01534 308 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 TLE4Q04727 773 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 RUNX1T1Q06455 604 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 WASHC5Q12768 1159 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 OVGP1Q12889 678 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 ART3Q13508 389 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 CUL4AQ13619 759 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 TWIST1Q15672 202 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 DEFB133Q30KQ1 61 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 RILPL1Q5EBL4 403 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 WSCD1Q658N2 575 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 ZNF776Q68DI1 518 aaPredicted RBP4.35□□□□□ -1.71
LINC00540-201ENST00000611481 CLEC9AQ6UXN8 241 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 TRIM72Q6ZMU5 477 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 PIK3AP1Q6ZUJ8 805 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 IRF2BP2Q7Z5L9 587 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 NRACQ8N912 160 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 KIAA1143Q96AT1 154 aaPredicted RBP4.35□□□□□ -1.71
LINC00540-201ENST00000611481 RADILQ96JH8 1075 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 MARK4Q96L34 752 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 GFM1Q96RP9 751 aaKnown RBP4.35□□□□□ -1.71
LINC00540-201ENST00000611481 PAIP1Q9H074 479 aaKnown RBP4.35□□□□□ -1.71
LINC00540-201ENST00000611481 NEUROG2Q9H2A3 272 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 PABPC3Q9H361 631 aaKnown RBP4.35□□□□□ -1.71
LINC00540-201ENST00000611481 GPR35Q9HC97 309 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 CHST11Q9NPF2 352 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 DUSP22Q9NRW4 184 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 ASF1BQ9NVP2 202 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 TMEM160Q9NX00 188 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 ELOVL2Q9NXB9 296 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 OSGIN2Q9Y236 505 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 TNFSF13BQ9Y275 285 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 PCDHA3Q9Y5H8 950 aa4.35□□□□□ -1.71
LINC00540-201ENST00000611481 KLF2Q9Y5W3 355 aaPredicted RBP4.35□□□□□ -1.71
LINC00540-201ENST00000611481 A0A087WWV3 80 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 CCDC69A6NI79 296 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 AQP12BA6NM10 295 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 CLCA1A8K7I4 914 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 SMTNL1A8MU46 457 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 F2RL2O00254 374 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 CYB561D2O14569 222 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 KCNN4O15554 427 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 COCHO43405 550 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 RAD1O60671 282 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 RPLP0P05388 317 aaKnown RBP4.34□□□□□ -1.71
LINC00540-201ENST00000611481 APOA4P06727 396 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 IL6RP08887 468 aaPredicted RBP4.34□□□□□ -1.71
LINC00540-201ENST00000611481 CHRM3P20309 590 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 SCP2P22307 547 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 ACAT1P24752 427 aaKnown RBP4.34□□□□□ -1.71
LINC00540-201ENST00000611481 PSMA3P25788 255 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 MAT2AP31153 395 aaKnown RBP4.34□□□□□ -1.71
LINC00540-201ENST00000611481 MCM5P33992 734 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 LIPAP38571 399 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 POLD2P49005 469 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 PGDP52209 483 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 IST1P53990 364 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 NLRP5P59047 1200 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 ARF3P61204 181 aaPredicted RBP4.34□□□□□ -1.71
LINC00540-201ENST00000611481 CCL7P80098 99 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 ARF1P84077 181 aaKnown RBP4.34□□□□□ -1.71
LINC00540-201ENST00000611481 MC1RQ01726 317 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 ERV3-1Q14264 604 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 PDIA5Q14554 519 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 ZNF630Q2M218 657 aaPredicted RBP4.34□□□□□ -1.71
LINC00540-201ENST00000611481 ACAD10Q6JQN1 1059 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 MEPCEQ7L2J0 689 aaKnown RBP4.34□□□□□ -1.71
LINC00540-201ENST00000611481 MAVSQ7Z434 540 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 ANKS1BQ7Z6G8 1248 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 PRPF39Q86UA1 669 aaKnown RBP4.34□□□□□ -1.71
LINC00540-201ENST00000611481 FJX1Q86VR8 437 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 CCDC83Q8IWF9 413 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 ETNPPLQ8TBG4 499 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 STYXQ8WUJ0 223 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 KBTBD7Q8WVZ9 684 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 ST8SIA4Q92187 359 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 STARD8Q92502 1023 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 NAT6Q93015 286 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 ZUFSPQ96AP4 578 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 TMEM159Q96B96 161 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 SDCCAG3Q96C92 435 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 SNRNP40Q96DI7 357 aaKnown RBP4.34□□□□□ -1.71
LINC00540-201ENST00000611481 SNX22Q96L94 193 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 DMRTA2Q96SC8 542 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 CMKLR1Q99788 373 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 OMDQ99983 421 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 CALN1Q9BXU9 219 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 AGXT2Q9BYV1 514 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 MCCC2Q9HCC0 563 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 PRSS16Q9NQE7 514 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 SACM1LQ9NTJ5 587 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 HAUS2Q9NVX0 235 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 VPS28Q9UK41 221 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 UBQLN1Q9UMX0 589 aaKnown RBP4.34□□□□□ -1.71
LINC00540-201ENST00000611481 SLC27A6Q9Y2P4 619 aa4.34□□□□□ -1.71
LINC00540-201ENST00000611481 MAP1AP78559 2803 aaPredicted RBP4.33□□□□□ -1.72
LINC00540-201ENST00000611481 TBC1D3DA0A087WVF3 549 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms