RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 SLC6A13Q9NSD5 602 aa14.97□□□□□ -0.01
UPF1-204ENST00000596842 OPTCQ9UBM4 332 aa14.97□□□□□ -0.01
UPF1-204ENST00000596842 CCRL2O00421 344 aa14.96□□□□□ -0.01
UPF1-204ENST00000596842 PGRP06401 933 aa14.96□□□□□ -0.01
UPF1-204ENST00000596842 RAPSNQ13702 412 aa14.96□□□□□ -0.01
UPF1-204ENST00000596842 TAF1AQ15573 450 aaPredicted RBP14.96□□□□□ -0.01
UPF1-204ENST00000596842 SPRYD7Q5W111 196 aa14.96□□□□□ -0.01
UPF1-204ENST00000596842 PPP2R2DQ66LE6 453 aa14.96□□□□□ -0.01
UPF1-204ENST00000596842 DEPDC4Q8N2C3 294 aa14.96□□□□□ -0.01
UPF1-204ENST00000596842 ZFP90Q8TF47 636 aa14.96□□□□□ -0.01
UPF1-204ENST00000596842 HTRA1Q92743 480 aa14.96□□□□□ -0.01
UPF1-204ENST00000596842 KIF17Q9P2E2 1029 aa14.96□□□□□ -0.01
UPF1-204ENST00000596842 ERVK-18Q9QC07 812 aa14.96□□□□□ -0.01
UPF1-204ENST00000596842 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP14.96□□□□□ -0.01
UPF1-204ENST00000596842 PCDHGA3Q9Y5H0 932 aa14.96□□□□□ -0.01
UPF1-204ENST00000596842 WASH4PA8MWX3 477 aa14.96□□□□□ -0.01
UPF1-204ENST00000596842 UPK1AO00322 258 aa14.96□□□□□ -0.01
UPF1-204ENST00000596842 BCKDKO14874 412 aa14.96□□□□□ -0.01
UPF1-204ENST00000596842 TSPAN12O95859 305 aa14.96□□□□□ -0.01
UPF1-204ENST00000596842 GGT1P19440 569 aa14.96□□□□□ -0.01
UPF1-204ENST00000596842 HOXD9P28356 352 aaPredicted RBP14.96□□□□□ -0.01
UPF1-204ENST00000596842 YBEYP58557 167 aaPredicted RBP14.96□□□□□ -0.01
UPF1-204ENST00000596842 PHKG1Q16816 387 aa14.96□□□□□ -0.01
UPF1-204ENST00000596842 CACHD1Q5VU97 1274 aa14.96□□□□□ -0.01
UPF1-204ENST00000596842 ZNF683Q8IZ20 524 aa14.96□□□□□ -0.01
UPF1-204ENST00000596842 ZCCHC7Q8N3Z6 543 aaKnown RBP14.96□□□□□ -0.01
UPF1-204ENST00000596842 PSD4Q8NDX1 1056 aa14.96□□□□□ -0.01
UPF1-204ENST00000596842 NDNFQ8TB73 568 aa14.96□□□□□ -0.01
UPF1-204ENST00000596842 NETO1Q8TDF5 533 aa14.96□□□□□ -0.01
UPF1-204ENST00000596842 UBE2FQ969M7 185 aa14.96□□□□□ -0.01
UPF1-204ENST00000596842 BARD1Q99728 777 aaKnown RBP14.96□□□□□ -0.01
UPF1-204ENST00000596842 GPR62Q9BZJ7 368 aa14.96□□□□□ -0.01
UPF1-204ENST00000596842 ZC4H2Q9NQZ6 224 aa14.96□□□□□ -0.01
UPF1-204ENST00000596842 C3orf18Q9UK00 162 aa14.96□□□□□ -0.01
UPF1-204ENST00000596842 NDUFS2O75306 463 aa14.96□□□□□ -0.02
UPF1-204ENST00000596842 ZNF12P17014 697 aa14.96□□□□□ -0.02
UPF1-204ENST00000596842 SERPINB1P30740 379 aa14.96□□□□□ -0.02
UPF1-204ENST00000596842 HUNKP57058 714 aa14.96□□□□□ -0.02
UPF1-204ENST00000596842 TSTA3Q13630 321 aaPredicted RBP14.96□□□□□ -0.02
UPF1-204ENST00000596842 TYSND1Q2T9J0 566 aa14.96□□□□□ -0.02
UPF1-204ENST00000596842 CES5AQ6NT32 575 aa14.96□□□□□ -0.02
UPF1-204ENST00000596842 PRSS55Q6UWB4 352 aaPredicted RBP14.96□□□□□ -0.02
UPF1-204ENST00000596842 RNF175Q8N4F7 328 aa14.96□□□□□ -0.02
UPF1-204ENST00000596842 GPR150Q8NGU9 434 aa14.96□□□□□ -0.02
UPF1-204ENST00000596842 PSMA8Q8TAA3 256 aa14.96□□□□□ -0.02
UPF1-204ENST00000596842 BRINP2Q9C0B6 783 aa14.96□□□□□ -0.02
UPF1-204ENST00000596842 MTRRQ9UBK8 725 aa14.96□□□□□ -0.02
UPF1-204ENST00000596842 DNAJB9Q9UBS3 223 aa14.96□□□□□ -0.02
UPF1-204ENST00000596842 CDH7Q9ULB5 785 aa14.96□□□□□ -0.02
UPF1-204ENST00000596842 PCDHB8Q9UN66 801 aa14.96□□□□□ -0.02
UPF1-204ENST00000596842 LOC730098B7Z3J9 87 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 H0YAE9 185 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 RAD51BO15315 384 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 TULP3O75386 442 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 CPSF4O95639 269 aaKnown RBP14.95□□□□□ -0.02
UPF1-204ENST00000596842 C1QCP02747 245 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 SEPHS1P49903 392 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 RHOAP61586 193 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 NCS1P62166 190 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 SYT16Q17RD7 645 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 C10orf111Q8N326 155 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 ATG16L2Q8NAA4 619 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 ZNF540Q8NDQ6 660 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 TPD52L3Q96J77 140 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 ADGRE3Q9BY15 652 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 MUC13Q9H3R2 512 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 OR7A17O14581 309 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 STX16O14662 325 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 OTCP00480 354 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 SUOXP51687 545 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 TMBIM6P55061 237 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 SKIV2LQ15477 1246 aaKnown RBP14.95□□□□□ -0.02
UPF1-204ENST00000596842 LRRC73Q5JTD7 316 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 RSBN1Q5VWQ0 802 aaPredicted RBP14.95□□□□□ -0.02
UPF1-204ENST00000596842 USP51Q70EK9 711 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 EBPLQ9BY08 206 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 TPK1Q9H3S4 243 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 ABCB10Q9NRK6 738 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 K7ERQ8 282 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 ZNF701M0R085 212 aaPredicted RBP14.95□□□□□ -0.02
UPF1-204ENST00000596842 SLC1A7O00341 560 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 PRMT5O14744 637 aaPredicted RBP14.95□□□□□ -0.02
UPF1-204ENST00000596842 PRAMEF1O95521 474 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 GLUD1P00367 558 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 PRLP01236 227 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 NECAB2Q7Z6G3 386 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 SERINC5Q86VE9 423 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 CCDC103Q8IW40 242 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 ADHFE1Q8IWW8 467 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 RIMKLAQ8IXN7 391 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 LKAAEAR1Q8TD35 194 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 ADAMTS16Q8TE57 1224 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 RPL3LQ92901 407 aaKnown RBP14.95□□□□□ -0.02
UPF1-204ENST00000596842 ZNF382Q96SR6 550 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 INPP5KQ9BT40 448 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 SIAEQ9HAT2 523 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 COQ3Q9NZJ6 369 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 CRLS1Q9UJA2 301 aa14.95□□□□□ -0.02
UPF1-204ENST00000596842 CLDN25C9JDP6 229 aa14.94□□□□□ -0.02
UPF1-204ENST00000596842 RGS14O43566 566 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms