RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 ZNF470Q6ECI4 717 aa13□□□□□ -0.33
CLK3-216ENST00000564468 INO80CQ6PI98 192 aaPredicted RBP13□□□□□ -0.33
CLK3-216ENST00000564468 NAPRTQ6XQN6 538 aa13□□□□□ -0.33
CLK3-216ENST00000564468 PPP1R3BQ86XI6 285 aa13□□□□□ -0.33
CLK3-216ENST00000564468 RASGRP3Q8IV61 690 aa13□□□□□ -0.33
CLK3-216ENST00000564468 NLGN4XQ8N0W4 816 aa13□□□□□ -0.33
CLK3-216ENST00000564468 BBOF1Q8ND07 529 aa13□□□□□ -0.33
CLK3-216ENST00000564468 NLGN4YQ8NFZ3 816 aaPredicted RBP13□□□□□ -0.33
CLK3-216ENST00000564468 MAGEC3Q8TD91 643 aa13□□□□□ -0.33
CLK3-216ENST00000564468 LRRC39Q96DD0 335 aa13□□□□□ -0.33
CLK3-216ENST00000564468 SNF8Q96H20 258 aa13□□□□□ -0.33
CLK3-216ENST00000564468 BIRC8Q96P09 236 aa13□□□□□ -0.33
CLK3-216ENST00000564468 EBNA1BP2Q99848 306 aaKnown RBP13□□□□□ -0.33
CLK3-216ENST00000564468 CTRCQ99895 268 aa13□□□□□ -0.33
CLK3-216ENST00000564468 EFHD1Q9BUP0 239 aa13□□□□□ -0.33
CLK3-216ENST00000564468 SYTL2Q9HCH5 934 aa13□□□□□ -0.33
CLK3-216ENST00000564468 APMAPQ9HDC9 416 aa13□□□□□ -0.33
CLK3-216ENST00000564468 SOHLH2Q9NX45 425 aa13□□□□□ -0.33
CLK3-216ENST00000564468 OR6C2Q9NZP2 312 aa13□□□□□ -0.33
CLK3-216ENST00000564468 POMT2Q9UKY4 750 aa13□□□□□ -0.33
CLK3-216ENST00000564468 RARRES3Q9UL19 164 aa13□□□□□ -0.33
CLK3-216ENST00000564468 CDYLQ9Y232 598 aa13□□□□□ -0.33
CLK3-216ENST00000564468 CRYL1Q9Y2S2 319 aa13□□□□□ -0.33
CLK3-216ENST00000564468 TMEM184BQ9Y519 407 aaPredicted RBP13□□□□□ -0.33
CLK3-216ENST00000564468 COMMD10Q9Y6G5 202 aa13□□□□□ -0.33
CLK3-216ENST00000564468 ATMQ13315 3056 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 EFCAB8A8MWE9 144 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 BTN3A1O00481 513 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 TTI1O43156 1089 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 RAD1O60671 282 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 STK17BO94768 372 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 MT-ND3P03897 115 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 IVDP26440 423 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 PRDX3P30048 256 aaKnown RBP12.99□□□□□ -0.33
CLK3-216ENST00000564468 ATP5DP30049 168 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 KPNA2P52292 529 aaKnown RBP12.99□□□□□ -0.33
CLK3-216ENST00000564468 ARL4CP56559 192 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 PPP1CAP62136 330 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 SH3BP2P78314 561 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 DHX9Q08211 1270 aaKnown RBP12.99□□□□□ -0.33
CLK3-216ENST00000564468 ABRQ12979 859 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 TUBB3Q13509 450 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 MAP7Q14244 749 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 TGIF1Q15583 401 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 TTLL9Q3SXZ7 439 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 BBS9Q3SYG4 887 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.99□□□□□ -0.33
CLK3-216ENST00000564468 ARHGAP40Q5TG30 622 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 SYT10Q6XYQ8 523 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 CENPUQ71F23 418 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 DCUN1D3Q8IWE4 304 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 CACNA2D3Q8IZS8 1091 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 D2HGDHQ8N465 521 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 RAB42Q8N4Z0 105 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 OR8K5Q8NH50 307 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 CFAP61Q8NHU2 1237 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 LKAAEAR1Q8TD35 194 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 SNRNP27Q8WVK2 155 aaKnown RBP12.99□□□□□ -0.33
CLK3-216ENST00000564468 SKA2Q8WVK7 121 aaPredicted RBP12.99□□□□□ -0.33
CLK3-216ENST00000564468 NKD1Q969G9 470 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 PMEPA1Q969W9 287 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 KIAA1143Q96AT1 154 aaPredicted RBP12.99□□□□□ -0.33
CLK3-216ENST00000564468 WBP1Q96G27 269 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 KRT12Q99456 494 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 FANCEQ9HB96 536 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 CPNE5Q9HCH3 593 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 LATS2Q9NRM7 1088 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 ACTR10Q9NZ32 417 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 PILRAQ9UKJ1 303 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 BTRCQ9Y297 605 aa12.99□□□□□ -0.33
CLK3-216ENST00000564468 MYO18BQ8IUG5 2567 aa12.98□□□□□ -0.33
CLK3-216ENST00000564468 FAM187AA6NFU0 413 aa12.98□□□□□ -0.33
CLK3-216ENST00000564468 BTN3A3O00478 584 aa12.98□□□□□ -0.33
CLK3-216ENST00000564468 SEC31AO94979 1220 aaKnown RBP12.98□□□□□ -0.33
CLK3-216ENST00000564468 S1PR4O95977 384 aa12.98□□□□□ -0.33
CLK3-216ENST00000564468 CCNFP41002 786 aa12.98□□□□□ -0.33
CLK3-216ENST00000564468 RAB28P51157 221 aa12.98□□□□□ -0.33
CLK3-216ENST00000564468 ITGA8P53708 1063 aa12.98□□□□□ -0.33
CLK3-216ENST00000564468 RHDQ02161 417 aa12.98□□□□□ -0.33
CLK3-216ENST00000564468 ABHD18Q0P651 414 aa12.98□□□□□ -0.33
CLK3-216ENST00000564468 CRYMQ14894 314 aa12.98□□□□□ -0.33
CLK3-216ENST00000564468 KIR2DS3Q14952 304 aa12.98□□□□□ -0.33
CLK3-216ENST00000564468 HIF1AQ16665 826 aa12.98□□□□□ -0.33
CLK3-216ENST00000564468 KYNUQ16719 465 aa12.98□□□□□ -0.33
CLK3-216ENST00000564468 CTSL3PQ5NE16 218 aa12.98□□□□□ -0.33
CLK3-216ENST00000564468 HIBCHQ6NVY1 386 aaPredicted RBP12.98□□□□□ -0.33
CLK3-216ENST00000564468 UNC5AQ6ZN44 842 aa12.98□□□□□ -0.33
CLK3-216ENST00000564468 KCNMB4Q86W47 210 aa12.98□□□□□ -0.33
CLK3-216ENST00000564468 VRK3Q8IV63 474 aa12.98□□□□□ -0.33
CLK3-216ENST00000564468 ADGRF3Q8IZF5 1079 aa12.98□□□□□ -0.33
CLK3-216ENST00000564468 ESX1Q8N693 406 aa12.98□□□□□ -0.33
CLK3-216ENST00000564468 SPATA4Q8NEY3 305 aa12.98□□□□□ -0.33
CLK3-216ENST00000564468 RAD51AP1Q96B01 352 aa12.98□□□□□ -0.33
CLK3-216ENST00000564468 SLC22A18Q96BI1 424 aa12.98□□□□□ -0.33
CLK3-216ENST00000564468 TRIM56Q9BRZ2 755 aaKnown RBP12.98□□□□□ -0.33
CLK3-216ENST00000564468 TRIM51Q9BSJ1 452 aa12.98□□□□□ -0.33
CLK3-216ENST00000564468 RAB11FIP5Q9BXF6 653 aa12.98□□□□□ -0.33
CLK3-216ENST00000564468 ULBP3Q9BZM4 244 aa12.98□□□□□ -0.33
CLK3-216ENST00000564468 SPRY4Q9C004 299 aa12.98□□□□□ -0.33
CLK3-216ENST00000564468 XKR8Q9H6D3 395 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms