RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 CAMK2BQ13554 666 aa16.98■□□□□ 0.31
SHMT2-225ENST00000556798 GRB7Q14451 532 aa16.98■□□□□ 0.31
SHMT2-225ENST00000556798 UAP1Q16222 522 aaPredicted RBP16.98■□□□□ 0.31
SHMT2-225ENST00000556798 C3orf38Q5JPI3 329 aa16.98■□□□□ 0.31
SHMT2-225ENST00000556798 EEF1AKMT2Q5JPI9 291 aaKnown RBP16.98■□□□□ 0.31
SHMT2-225ENST00000556798 FAM92BQ6ZTR7 304 aa16.98■□□□□ 0.31
SHMT2-225ENST00000556798 AMIGO1Q86WK6 493 aa16.98■□□□□ 0.31
SHMT2-225ENST00000556798 LMNTD1Q8N9Z9 388 aa16.98■□□□□ 0.31
SHMT2-225ENST00000556798 EEF1AKMT1Q8WVE0 214 aa16.98■□□□□ 0.31
SHMT2-225ENST00000556798 UBXN4Q92575 508 aa16.98■□□□□ 0.31
SHMT2-225ENST00000556798 LINGO1Q96FE5 620 aa16.98■□□□□ 0.31
SHMT2-225ENST00000556798 IL17FQ96PD4 163 aa16.98■□□□□ 0.31
SHMT2-225ENST00000556798 CYTH2Q99418 400 aa16.98■□□□□ 0.31
SHMT2-225ENST00000556798 FUT8Q9BYC5 575 aa16.98■□□□□ 0.31
SHMT2-225ENST00000556798 TXLNGYQ9BZA5 131 aa16.98■□□□□ 0.31
SHMT2-225ENST00000556798 HRASLS2Q9NWW9 162 aa16.98■□□□□ 0.31
SHMT2-225ENST00000556798 POLG2Q9UHN1 485 aa16.98■□□□□ 0.31
SHMT2-225ENST00000556798 SLC39A10Q9ULF5 831 aa16.98■□□□□ 0.31
SHMT2-225ENST00000556798 A0A1W2PNU3 283 aaPredicted RBP16.97■□□□□ 0.31
SHMT2-225ENST00000556798 GSAPA4D1B5 854 aa16.97■□□□□ 0.31
SHMT2-225ENST00000556798 ARHGEF33A8MVX0 844 aa16.97■□□□□ 0.31
SHMT2-225ENST00000556798 BTN3A3O00478 584 aa16.97■□□□□ 0.31
SHMT2-225ENST00000556798 BTN3A1O00481 513 aa16.97■□□□□ 0.31
SHMT2-225ENST00000556798 MPC1LP0DKB6 136 aa16.97■□□□□ 0.31
SHMT2-225ENST00000556798 CBSLP0DN79 551 aa16.97■□□□□ 0.31
SHMT2-225ENST00000556798 HGFP14210 728 aa16.97■□□□□ 0.31
SHMT2-225ENST00000556798 CD9P21926 228 aa16.97■□□□□ 0.31
SHMT2-225ENST00000556798 CBSP35520 551 aa16.97■□□□□ 0.31
SHMT2-225ENST00000556798 RGS4P49798 205 aa16.97■□□□□ 0.31
SHMT2-225ENST00000556798 C16orf72Q14CZ0 275 aa16.97■□□□□ 0.31
SHMT2-225ENST00000556798 ERCC6LQ2NKX8 1250 aa16.97■□□□□ 0.31
SHMT2-225ENST00000556798 GRTP1Q5TC63 336 aa16.97■□□□□ 0.31
SHMT2-225ENST00000556798 KLHL35Q6PF15 583 aa16.97■□□□□ 0.31
SHMT2-225ENST00000556798 FOXR1Q6PIV2 292 aa16.97■□□□□ 0.31
SHMT2-225ENST00000556798 TMEM207Q6UWW9 146 aa16.97■□□□□ 0.31
SHMT2-225ENST00000556798 CYHR1Q6ZMK1 362 aa16.97■□□□□ 0.31
SHMT2-225ENST00000556798 NEK10Q6ZWH5 1172 aa16.97■□□□□ 0.31
SHMT2-225ENST00000556798 PLXDC1Q8IUK5 500 aa16.97■□□□□ 0.31
SHMT2-225ENST00000556798 CEP97Q8IW35 865 aa16.97■□□□□ 0.31
SHMT2-225ENST00000556798 EIF1ADQ8N9N8 165 aaKnown RBP16.97■□□□□ 0.31
SHMT2-225ENST00000556798 GPR22Q99680 433 aa16.97■□□□□ 0.31
SHMT2-225ENST00000556798 DPYSL5Q9BPU6 564 aa16.97■□□□□ 0.31
SHMT2-225ENST00000556798 STRADBQ9C0K7 418 aa16.97■□□□□ 0.31
SHMT2-225ENST00000556798 SATB2Q9UPW6 733 aa16.97■□□□□ 0.31
SHMT2-225ENST00000556798 A0A087WUV0 522 aaPredicted RBP16.96■□□□□ 0.31
SHMT2-225ENST00000556798 PHGDHO43175 533 aaKnown RBP16.96■□□□□ 0.31
SHMT2-225ENST00000556798 RIPK2O43353 540 aa16.96■□□□□ 0.31
SHMT2-225ENST00000556798 KIF1CO43896 1103 aaKnown RBP16.96■□□□□ 0.31
SHMT2-225ENST00000556798 PSIP1O75475 530 aaKnown RBP16.96■□□□□ 0.31
SHMT2-225ENST00000556798 TSPAN12O95859 305 aa16.96■□□□□ 0.31
SHMT2-225ENST00000556798 C9P02748 559 aa16.96■□□□□ 0.31
SHMT2-225ENST00000556798 MPOP05164 745 aa16.96■□□□□ 0.31
SHMT2-225ENST00000556798 ZNF37AP17032 561 aaPredicted RBP16.96■□□□□ 0.31
SHMT2-225ENST00000556798 PKLRP30613 574 aa16.96■□□□□ 0.31
SHMT2-225ENST00000556798 SHMT2P34897 504 aa16.96■□□□□ 0.31
SHMT2-225ENST00000556798 SPRP35270 261 aaPredicted RBP16.96■□□□□ 0.31
SHMT2-225ENST00000556798 BMPR2Q13873 1038 aa16.96■□□□□ 0.31
SHMT2-225ENST00000556798 USP10Q14694 798 aaKnown RBP16.96■□□□□ 0.31
SHMT2-225ENST00000556798 ARMC6Q6NXE6 501 aa16.96■□□□□ 0.31
SHMT2-225ENST00000556798 TTC23LQ6PF05 361 aa16.96■□□□□ 0.31
SHMT2-225ENST00000556798 TRMT10CQ7L0Y3 403 aaKnown RBP16.96■□□□□ 0.31
SHMT2-225ENST00000556798 TAX1BP1Q86VP1 789 aa16.96■□□□□ 0.31
SHMT2-225ENST00000556798 ADGRF3Q8IZF5 1079 aa16.96■□□□□ 0.31
SHMT2-225ENST00000556798 MYO1HQ8N1T3 1032 aa16.96■□□□□ 0.31
SHMT2-225ENST00000556798 C2orf73Q8N5S3 287 aaPredicted RBP16.96■□□□□ 0.31
SHMT2-225ENST00000556798 LIN37Q96GY3 246 aaPredicted RBP16.96■□□□□ 0.31
SHMT2-225ENST00000556798 PPM1MQ96MI6 270 aa16.96■□□□□ 0.31
SHMT2-225ENST00000556798 MENTQ9BUN1 341 aa16.96■□□□□ 0.31
SHMT2-225ENST00000556798 PDP2Q9P2J9 529 aa16.96■□□□□ 0.31
SHMT2-225ENST00000556798 ADAMTS6Q9UKP5 1117 aa16.96■□□□□ 0.31
SHMT2-225ENST00000556798 CCDC187A0A096LP49 1063 aa16.95■□□□□ 0.3
SHMT2-225ENST00000556798 TRABD2BA6NFA1 517 aa16.95■□□□□ 0.3
SHMT2-225ENST00000556798 POC1B-GALNT4F8VUJ3 575 aa16.95■□□□□ 0.3
SHMT2-225ENST00000556798 TMX2-CTNND1H3BSU7 103 aa16.95■□□□□ 0.3
SHMT2-225ENST00000556798 EIF3FO00303 357 aaPredicted RBP16.95■□□□□ 0.3
SHMT2-225ENST00000556798 RASSF9O75901 435 aa16.95■□□□□ 0.3
SHMT2-225ENST00000556798 CATP04040 527 aaKnown RBP16.95■□□□□ 0.3
SHMT2-225ENST00000556798 ITGA2BP08514 1039 aa16.95■□□□□ 0.3
SHMT2-225ENST00000556798 CCNFP41002 786 aa16.95■□□□□ 0.3
SHMT2-225ENST00000556798 RAB28P51157 221 aa16.95■□□□□ 0.3
SHMT2-225ENST00000556798 SLC12A2P55011 1212 aa16.95■□□□□ 0.3
SHMT2-225ENST00000556798 IL2P60568 153 aa16.95■□□□□ 0.3
SHMT2-225ENST00000556798 TUBB4BP68371 445 aa16.95■□□□□ 0.3
SHMT2-225ENST00000556798 GABREP78334 506 aa16.95■□□□□ 0.3
SHMT2-225ENST00000556798 POU4F1Q01851 419 aa16.95■□□□□ 0.3
SHMT2-225ENST00000556798 PRKAA1Q13131 559 aa16.95■□□□□ 0.3
SHMT2-225ENST00000556798 FBXO38Q6PIJ6 1188 aa16.95■□□□□ 0.3
SHMT2-225ENST00000556798 UBE2R2Q712K3 238 aaPredicted RBP16.95■□□□□ 0.3
SHMT2-225ENST00000556798 RAB11FIP2Q7L804 512 aa16.95■□□□□ 0.3
SHMT2-225ENST00000556798 ASB11Q8WXH4 323 aa16.95■□□□□ 0.3
SHMT2-225ENST00000556798 RAD51AP1Q96B01 352 aa16.95■□□□□ 0.3
SHMT2-225ENST00000556798 GRAMD1AQ96CP6 724 aa16.95■□□□□ 0.3
SHMT2-225ENST00000556798 ZDHHC12Q96GR4 267 aa16.95■□□□□ 0.3
SHMT2-225ENST00000556798 PAFAH2Q99487 392 aa16.95■□□□□ 0.3
SHMT2-225ENST00000556798 RAB33BQ9H082 229 aa16.95■□□□□ 0.3
SHMT2-225ENST00000556798 EPB41L4BQ9H329 900 aa16.95■□□□□ 0.3
SHMT2-225ENST00000556798 GPAMQ9HCL2 828 aa16.95■□□□□ 0.3
SHMT2-225ENST00000556798 SPHK1Q9NYA1 384 aa16.95■□□□□ 0.3
SHMT2-225ENST00000556798 EPHA6Q9UF33 1036 aa16.95■□□□□ 0.3
SHMT2-225ENST00000556798 IKZF3Q9UKT9 509 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms