RNA–Protein interactions for RNA: ENST00000553855.5

PSEN1-209, Transcript of presenilin 1, humanhuman

TSL 1 (best)

Gene PSEN1, Length 1,254 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-209ENST00000553855 SATB2Q9UPW6 733 aa8.14□□□□□ -1.11
PSEN1-209ENST00000553855 ASF1AQ9Y294 204 aa8.14□□□□□ -1.11
PSEN1-209ENST00000553855 PCDHGA8Q9Y5G5 932 aa8.14□□□□□ -1.11
PSEN1-209ENST00000553855 NCOR2Q9Y618 2525 aa8.14□□□□□ -1.11
PSEN1-209ENST00000553855 LRP4O75096 1905 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 TPRP12270 2363 aaKnown RBP8.13□□□□□ -1.11
PSEN1-209ENST00000553855 A8MU76 341 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 AGRPO00253 132 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 MATN2O00339 956 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 OR1I1O60431 355 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 ESR1P03372 595 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 ITGA2BP08514 1039 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 BRAFP15056 766 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 ITGB6P18564 788 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 RPS3P23396 243 aaKnown RBP eCLIP8.13□□□□□ -1.11
PSEN1-209ENST00000553855 ITGA8P53708 1063 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 PCBP4P57723 403 aaKnown RBP8.13□□□□□ -1.11
PSEN1-209ENST00000553855 ERVPABLB-1P60509 514 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 RPS26P62854 115 aaKnown RBP8.13□□□□□ -1.11
PSEN1-209ENST00000553855 ZFP36L1Q07352 338 aaKnown RBP8.13□□□□□ -1.11
PSEN1-209ENST00000553855 C2orf54Q08AI8 447 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 HSPA14Q0VDF9 509 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 GPR18Q14330 331 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 CLCA4Q14CN2 919 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 BRD3Q15059 726 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 WHAMMP3Q1A5X7 153 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 TBC1D25Q3MII6 688 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 TTLL9Q3SXZ7 439 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 SPANXN3Q5MJ09 141 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 BROXQ5VW32 411 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 IRGCQ6NXR0 463 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 FAM83HQ6ZRV2 1179 aaPredicted RBP8.13□□□□□ -1.11
PSEN1-209ENST00000553855 ZNF534Q76KX8 674 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 PROSER1Q86XN7 944 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 FAM129CQ86XR2 697 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 SLITRK4Q8IW52 837 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 ZNF248Q8NDW4 579 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 ACVR1CQ8NER5 493 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 NAT14Q8WUY8 206 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 LCN9Q8WX39 176 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 TFGQ92734 400 aaPredicted RBP8.13□□□□□ -1.11
PSEN1-209ENST00000553855 LRRC39Q96DD0 335 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 TGM7Q96PF1 710 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 TRIM51Q9BSJ1 452 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 RASSF4Q9H2L5 321 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 TRIT1Q9H3H1 467 aaKnown RBP8.13□□□□□ -1.11
PSEN1-209ENST00000553855 SRMSQ9H3Y6 488 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 POLG2Q9UHN1 485 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 WDR37Q9Y2I8 494 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 NEU2Q9Y3R4 380 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 CFAP20Q9Y6A4 193 aaKnown RBP8.13□□□□□ -1.11
PSEN1-209ENST00000553855 FAM169AQ9Y6X4 670 aa8.13□□□□□ -1.11
PSEN1-209ENST00000553855 IGHV5-10-1A0A0J9YXX1 117 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 PABPN1LA6NDY0 278 aaKnown RBP8.12□□□□□ -1.11
PSEN1-209ENST00000553855 PRR19A6NJB7 356 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 GOLGA8KD6RF30 607 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 GOLGA8TH3BQL2 631 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 TOX3O15405 576 aaPredicted RBP8.12□□□□□ -1.11
PSEN1-209ENST00000553855 SEC31AO94979 1220 aaKnown RBP8.12□□□□□ -1.11
PSEN1-209ENST00000553855 THRAP10827 490 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 FMO4P31512 558 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 CAPZBP47756 277 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 PREPP48147 710 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 CSE1LP55060 971 aaKnown RBP8.12□□□□□ -1.11
PSEN1-209ENST00000553855 CAV1Q03135 178 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 DNTTIP2Q5QJE6 756 aaKnown RBP8.12□□□□□ -1.11
PSEN1-209ENST00000553855 CACHD1Q5VU97 1274 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 ZNF470Q6ECI4 717 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 CAPRIN2Q6IMN6 1127 aaKnown RBP8.12□□□□□ -1.11
PSEN1-209ENST00000553855 UGT3A1Q6NUS8 523 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 C8orf74Q6P047 294 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 IGF2-ASQ6U949 168 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 CENPUQ71F23 418 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 B3GNT8Q7Z7M8 397 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 LDB1Q86U70 411 aaPredicted RBP8.12□□□□□ -1.11
PSEN1-209ENST00000553855 TMEM135Q86UB9 458 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 PDZD3Q86UT5 571 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 TBC1D21Q8IYX1 336 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 GOLM1Q8NBJ4 401 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 RCBTB1Q8NDN9 531 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 GPR150Q8NGU9 434 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 KIF18AQ8NI77 898 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 MAGEC3Q8TD91 643 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 GTPBP3Q969Y2 492 aaKnown RBP8.12□□□□□ -1.11
PSEN1-209ENST00000553855 RMDN2Q96LZ7 410 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 SLC46A1Q96NT5 459 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 CD180Q99467 661 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 EBNA1BP2Q99848 306 aaKnown RBP8.12□□□□□ -1.11
PSEN1-209ENST00000553855 ERP44Q9BS26 406 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 ASPSCR1Q9BZE9 553 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 SEMA6CQ9H3T2 930 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 KIR3DX1Q9H7L2 352 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 HRASLS2Q9NWW9 162 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 SLC39A1Q9NY26 324 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 ZC3H7BQ9UGR2 993 aaKnown RBP8.12□□□□□ -1.11
PSEN1-209ENST00000553855 GPN3Q9UHW5 284 aaPredicted RBP8.12□□□□□ -1.11
PSEN1-209ENST00000553855 SLC24A2Q9UI40 661 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 CDC23Q9UJX2 597 aa8.12□□□□□ -1.11
PSEN1-209ENST00000553855 TDRKHQ9Y2W6 561 aaKnown RBP8.12□□□□□ -1.11
PSEN1-209ENST00000553855 SNX24Q9Y343 169 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms