RNA–Protein interactions for RNA: ENST00000553745.5

ABCD4-219, Transcript of ATP binding cassette subfamily D member 4, human

TSL 2

Gene ABCD4, Length 1,770 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-219	ENST00000553745	HERVK_113	P63132	956 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	DMWD	Q09019	674 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	HSPA14	Q0VDF9	509 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	GBX1	Q14549	363 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	MUM1	Q2TAK8	710 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	KBTBD2	Q8IY47	623 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	AFAP1L2	Q8N4X5	818 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	LILRA3	Q8N6C8	439 aa	Predicted RBP	13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	EFCAB3	Q8N7B9	438 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	HMGCLL1	Q8TB92	370 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	RCN3	Q96D15	328 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	MARK4	Q96L34	752 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	CCM2	Q9BSQ5	444 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	ERVK-6	Q9BXR3	956 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	SPATA6	Q9NWH7	488 aa	Predicted RBP	13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	PRKAB1	Q9Y478	270 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	TRAF6	Q9Y4K3	522 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	CACNA1I	Q9P0X4	2223 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	ZFC3H1	O60293	1989 aa	Known RBP	13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	LIN7A	O14910	233 aa	Predicted RBP	13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	AXIN1	O15169	862 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	NUAK1	O60285	661 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	SMIM24	O75264	130 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	SKAP2	O75563	359 aa	Predicted RBP	13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	DGKA	P23743	735 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	AKT2	P31751	481 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	RGS4	P49798	205 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	NUDT2	P50583	147 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	ATP6V0D1	P61421	351 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	TSN	Q15631	228 aa	Known RBP	13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	UGT3A2	Q3SY77	523 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	PLEKHS1	Q5SXH7	462 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	TSSK4	Q6SA08	328 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	VRK3	Q8IV63	474 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	TMEM145	Q8NBT3	493 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	PPFIBP2	Q8ND30	876 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	SNX19	Q92543	992 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	EXT2	Q93063	718 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	BMF	Q96LC9	184 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	KLHL42	Q9P2K6	505 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	GULP1	Q9UBP9	304 aa		13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745	ZBTB32	Q9Y2Y4	487 aa	Predicted RBP	13.76	□□□□□ -0.21
ABCD4-219	ENST00000553745		A0A0C4DFX4	3053 aa		13.75	□□□□□ -0.21
ABCD4-219	ENST00000553745	CCDC189	A1A4V9	331 aa		13.75	□□□□□ -0.21
ABCD4-219	ENST00000553745	TMEM221	A6NGB7	291 aa		13.75	□□□□□ -0.21
ABCD4-219	ENST00000553745		M0R296	226 aa		13.75	□□□□□ -0.21
ABCD4-219	ENST00000553745	CACNB4	O00305	520 aa	Predicted RBP	13.75	□□□□□ -0.21
ABCD4-219	ENST00000553745	MAP3K7	O43318	606 aa		13.75	□□□□□ -0.21
ABCD4-219	ENST00000553745	NDUFS2	O75306	463 aa		13.75	□□□□□ -0.21
ABCD4-219	ENST00000553745	SUPT7L	O94864	414 aa		13.75	□□□□□ -0.21
ABCD4-219	ENST00000553745	FGF4	P08620	206 aa		13.75	□□□□□ -0.21
ABCD4-219	ENST00000553745	ERF	P50548	548 aa		13.75	□□□□□ -0.21
ABCD4-219	ENST00000553745	BLMH	Q13867	455 aa		13.75	□□□□□ -0.21
ABCD4-219	ENST00000553745	PTK2B	Q14289	1009 aa		13.75	□□□□□ -0.21
ABCD4-219	ENST00000553745	ZNF423	Q2M1K9	1284 aa		13.75	□□□□□ -0.21
ABCD4-219	ENST00000553745	ZNF658B	Q4V348	819 aa	Predicted RBP	13.75	□□□□□ -0.21
ABCD4-219	ENST00000553745	SYTL3	Q4VX76	610 aa		13.75	□□□□□ -0.21
ABCD4-219	ENST00000553745	PIGG	Q5H8A4	983 aa		13.75	□□□□□ -0.21
ABCD4-219	ENST00000553745	TCHHL1	Q5QJ38	904 aa	Predicted RBP	13.75	□□□□□ -0.21
ABCD4-219	ENST00000553745	TPRG1L	Q5T0D9	272 aa		13.75	□□□□□ -0.21
ABCD4-219	ENST00000553745	C11orf96	Q7Z7L8	435 aa		13.75	□□□□□ -0.21
ABCD4-219	ENST00000553745	PGAM4	Q8N0Y7	254 aa		13.75	□□□□□ -0.21
ABCD4-219	ENST00000553745	MYO1H	Q8N1T3	1032 aa		13.75	□□□□□ -0.21
ABCD4-219	ENST00000553745	PTGR2	Q8N8N7	351 aa	Predicted RBP	13.75	□□□□□ -0.21
ABCD4-219	ENST00000553745	KIAA1191	Q96A73	305 aa		13.75	□□□□□ -0.21
ABCD4-219	ENST00000553745	PDLIM5	Q96HC4	596 aa	Known RBP	13.75	□□□□□ -0.21
ABCD4-219	ENST00000553745	ZNF514	Q96K75	400 aa	Predicted RBP	13.75	□□□□□ -0.21
ABCD4-219	ENST00000553745	LINC00615	Q96LM1	132 aa	Predicted RBP	13.75	□□□□□ -0.21
ABCD4-219	ENST00000553745	MRGBP	Q9NV56	204 aa		13.75	□□□□□ -0.21
ABCD4-219	ENST00000553745	NDE1	Q9NXR1	346 aa		13.75	□□□□□ -0.21
ABCD4-219	ENST00000553745	GPR34	Q9UPC5	381 aa		13.75	□□□□□ -0.21
ABCD4-219	ENST00000553745	TP53BP1	Q12888	1972 aa	Predicted RBP	13.74	□□□□□ -0.21
ABCD4-219	ENST00000553745	UBXN8	O00124	270 aa		13.74	□□□□□ -0.21
ABCD4-219	ENST00000553745	KPNA5	O15131	536 aa		13.74	□□□□□ -0.21
ABCD4-219	ENST00000553745	KERA	O60938	352 aa		13.74	□□□□□ -0.21
ABCD4-219	ENST00000553745	GPC4	O75487	556 aa		13.74	□□□□□ -0.21
ABCD4-219	ENST00000553745	CBSL	P0DN79	551 aa		13.74	□□□□□ -0.21
ABCD4-219	ENST00000553745	CBS	P35520	551 aa		13.74	□□□□□ -0.21
ABCD4-219	ENST00000553745	PREP	P48147	710 aa		13.74	□□□□□ -0.21
ABCD4-219	ENST00000553745	KIAA1024L	P59773	190 aa		13.74	□□□□□ -0.21
ABCD4-219	ENST00000553745	PFN3	P60673	137 aa		13.74	□□□□□ -0.21
ABCD4-219	ENST00000553745	ZRSR2	Q15696	482 aa	Known RBP	13.74	□□□□□ -0.21
ABCD4-219	ENST00000553745	XKR5	Q6UX68	686 aa		13.74	□□□□□ -0.21
ABCD4-219	ENST00000553745	MAMSTR	Q6ZN01	415 aa		13.74	□□□□□ -0.21
ABCD4-219	ENST00000553745	LARP4	Q71RC2	724 aa	Known RBP eCLIP	13.74	□□□□□ -0.21
ABCD4-219	ENST00000553745	LRRTM4	Q86VH4	590 aa		13.74	□□□□□ -0.21
ABCD4-219	ENST00000553745	CLYBL	Q8N0X4	340 aa		13.74	□□□□□ -0.21
ABCD4-219	ENST00000553745	DEFB119	Q8N690	84 aa		13.74	□□□□□ -0.21
ABCD4-219	ENST00000553745	PYDC1	Q8WXC3	89 aa		13.74	□□□□□ -0.21
ABCD4-219	ENST00000553745	SPACA7	Q96KW9	195 aa		13.74	□□□□□ -0.21
ABCD4-219	ENST00000553745	CDRT15	Q96T59	188 aa		13.74	□□□□□ -0.21
ABCD4-219	ENST00000553745	ORAI3	Q9BRQ5	295 aa		13.74	□□□□□ -0.21
ABCD4-219	ENST00000553745	EFCAB1	Q9HAE3	211 aa		13.74	□□□□□ -0.21
ABCD4-219	ENST00000553745	MRPL40	Q9NQ50	206 aa	Known RBP	13.74	□□□□□ -0.21
ABCD4-219	ENST00000553745	SLC17A4	Q9Y2C5	497 aa		13.74	□□□□□ -0.21
ABCD4-219	ENST00000553745	LRCH1	Q9Y2L9	728 aa		13.74	□□□□□ -0.21
ABCD4-219	ENST00000553745	FIS1	Q9Y3D6	152 aa		13.74	□□□□□ -0.21
ABCD4-219	ENST00000553745	SLCO1B1	Q9Y6L6	691 aa		13.74	□□□□□ -0.21
ABCD4-219	ENST00000553745		A0A1W2PPC4	97 aa		13.73	□□□□□ -0.21
ABCD4-219	ENST00000553745	SLC5A10	A0PJK1	596 aa		13.73	□□□□□ -0.21

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