RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 PLEKHG6Q3KR16 790 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 CRTC1Q6UUV9 634 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 SUSD1Q6UWL2 747 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 ENPP6Q6UWR7 440 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 USP51Q70EK9 711 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 TMCO2Q7Z6W1 182 aaPredicted RBP12.87□□□□□ -0.35
LDLR-203ENST00000535915 ITIH5Q86UX2 942 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 CBARPQ8N350 705 aaPredicted RBP12.87□□□□□ -0.35
LDLR-203ENST00000535915 FAM86B1Q8N7N1 296 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 CCDC115Q96NT0 180 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 OR52E6Q96RD3 313 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 GORASP2Q9H8Y8 452 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 ACTR8Q9H981 624 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 C1orf109Q9NX04 203 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 KCTD5Q9NXV2 234 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 HEMK1Q9Y5R4 338 aaPredicted RBP12.87□□□□□ -0.35
LDLR-203ENST00000535915 MAGED1Q9Y5V3 778 aaPredicted RBP12.87□□□□□ -0.35
LDLR-203ENST00000535915 NUP214P35658 2090 aaPredicted RBP12.87□□□□□ -0.35
LDLR-203ENST00000535915 KIAA1671Q9BY89 1806 aa12.87□□□□□ -0.35
LDLR-203ENST00000535915 H0YAE9 185 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 STK19P49842 368 aaPredicted RBP12.86□□□□□ -0.35
LDLR-203ENST00000535915 TMED1Q13445 227 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 DAG1Q14118 895 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 LRRC66Q68CR7 880 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 ZNF548Q8NEK5 533 aaPredicted RBP12.86□□□□□ -0.35
LDLR-203ENST00000535915 SKA2Q8WVK7 121 aaPredicted RBP12.86□□□□□ -0.35
LDLR-203ENST00000535915 CAPNS2Q96L46 248 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 MUS81Q96NY9 551 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 CLMPQ9H6B4 373 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 CARS2Q9HA77 564 aaKnown RBP12.86□□□□□ -0.35
LDLR-203ENST00000535915 SLC25A37Q9NYZ2 338 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 INVSQ9Y283 1065 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 LAMA3Q16787 3333 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 ELOVL7A1L3X0 281 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 PRSS23O95084 383 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 KRT6AP02538 564 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 KRT6BP04259 564 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 TCF3P15923 654 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 CA8P35219 290 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 CTSOP43234 321 aaPredicted RBP12.86□□□□□ -0.35
LDLR-203ENST00000535915 KRT6CP48668 564 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 PMS2P3Q13401 168 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 MPPE1Q53F39 396 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 METTL2BQ6P1Q9 378 aaKnown RBP12.86□□□□□ -0.35
LDLR-203ENST00000535915 RNF165Q6ZSG1 346 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 ZDHHC13Q8IUH4 622 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 SLC39A11Q8N1S5 342 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 USP7Q93009 1102 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 FAM162AQ96A26 154 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 SDCCAG3Q96C92 435 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 PHF12Q96QT6 1004 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 COPS8Q99627 209 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 SH3GL1Q99961 368 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 HERC2P3Q9BVR0 1158 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 SLC32A1Q9H598 525 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 POLR1BQ9H9Y6 1135 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 ZDHHC3Q9NYG2 299 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 INTS6Q9UL03 887 aaKnown RBP12.86□□□□□ -0.35
LDLR-203ENST00000535915 CDC14AQ9UNH5 594 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 COL4A6Q14031 1691 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 DOCK6Q96HP0 2047 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 G3V2T6 193 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 CST1P01037 141 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 ALPLP05186 524 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 BCKDHAP12694 445 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 SNRPD1P62314 119 aaKnown RBP12.86□□□□□ -0.35
LDLR-203ENST00000535915 HPCAP84074 193 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 ATP13A5Q4VNC0 1218 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 USP39Q53GS9 565 aaKnown RBP12.86□□□□□ -0.35
LDLR-203ENST00000535915 CCNYL2Q5T2Q4 361 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 GCNT7Q6ZNI0 430 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 TPRG1Q6ZUI0 275 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 CHST15Q7LFX5 561 aaPredicted RBP12.86□□□□□ -0.35
LDLR-203ENST00000535915 METTL3Q86U44 580 aaKnown RBP12.86□□□□□ -0.35
LDLR-203ENST00000535915 GALNT13Q8IUC8 556 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 MSRB3Q8IXL7 192 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 PHACTR4Q8IZ21 702 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 SLC22A17Q8WUG5 538 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 MRPS31Q92665 395 aaKnown RBP12.86□□□□□ -0.35
LDLR-203ENST00000535915 C12orf43Q96C57 262 aaKnown RBP12.86□□□□□ -0.35
LDLR-203ENST00000535915 SLC47A1Q96FL8 570 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 CXorf21Q9HAI6 301 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 PARVBQ9HBI1 364 aa12.86□□□□□ -0.35
LDLR-203ENST00000535915 AGAP14A8MT82 685 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 GNGT2O14610 69 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 GNRH1P01148 92 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 PDYNP01213 254 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 CBSLP0DN79 551 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 THRBP10828 461 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 SRCP12931 536 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 EEF1B2P24534 225 aaKnown RBP12.85□□□□□ -0.35
LDLR-203ENST00000535915 CCR7P32248 378 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 CBSP35520 551 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 GTDC1Q4AE62 458 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 KCTD8Q6ZWB6 473 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 UBE2R2Q712K3 238 aaPredicted RBP12.85□□□□□ -0.35
LDLR-203ENST00000535915 GAREM2Q75VX8 874 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 NECAB2Q7Z6G3 386 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 GPR180Q86V85 440 aa12.85□□□□□ -0.35
LDLR-203ENST00000535915 FIBINQ8TAL6 211 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms