RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 DYNC1I1O14576 645 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 SYNJ2O15056 1496 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 SYNJ1O43426 1573 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 EXTL3O43909 919 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 DOK2O60496 412 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 TPOP07202 933 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 CCDC159P0C7I6 412 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 PLA2G4BP0C869 781 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 RNF224P0DH78 156 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 NKX2-1P43699 371 aaPredicted RBP3.57□□□□□ -1.84
CD44-217ENST00000525348 RXRGP48443 463 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 TAF6P49848 677 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 B3GALT5-AS1P59052 145 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 CXCL9Q07325 125 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 LGALS3BPQ08380 585 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 PLA2G7Q13093 441 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 GTDC1Q4AE62 458 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 ADAMTSL4-AS1Q5T5F5 129 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 BHLHB9Q6PI77 547 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 ZBED9Q6R2W3 1325 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 DDHD1Q8NEL9 900 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 HSD17B8Q92506 261 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 TMEM143Q96AN5 459 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 MOAP1Q96BY2 351 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 ZNF653Q96CK0 615 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 ERP27Q96DN0 273 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 VMP1Q96GC9 406 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 CDHR1Q96JP9 859 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 MYADMQ96S97 322 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 IQCGQ9H095 443 aaKnown RBP3.57□□□□□ -1.84
CD44-217ENST00000525348 INTS10Q9NVR2 710 aaKnown RBP3.57□□□□□ -1.84
CD44-217ENST00000525348 COMMD8Q9NX08 183 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 OSER1Q9NX31 292 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 WSB2Q9NYS7 404 aaPredicted RBP3.57□□□□□ -1.84
CD44-217ENST00000525348 SLC7A7Q9UM01 511 aa3.57□□□□□ -1.84
CD44-217ENST00000525348 SNAPC4Q5SXM2 1469 aa3.56□□□□□ -1.84
CD44-217ENST00000525348 IGHV4-61A0A0C4DH41 118 aa3.56□□□□□ -1.84
CD44-217ENST00000525348 ELOVL7A1L3X0 281 aa3.56□□□□□ -1.84
CD44-217ENST00000525348 HEPACAM2A8MVW5 462 aa3.56□□□□□ -1.84
CD44-217ENST00000525348 C19orf81C9J6K1 198 aa3.56□□□□□ -1.84
CD44-217ENST00000525348 E9PI62 339 aa3.56□□□□□ -1.84
CD44-217ENST00000525348 VILLO15195 856 aa3.56□□□□□ -1.84
CD44-217ENST00000525348 TRMUO75648 421 aaKnown RBP3.56□□□□□ -1.84
CD44-217ENST00000525348 ZFAND5O76080 213 aa3.56□□□□□ -1.84
CD44-217ENST00000525348 IGHV4-59P01825 116 aa3.56□□□□□ -1.84
CD44-217ENST00000525348 ZNF24P17028 368 aa3.56□□□□□ -1.84
CD44-217ENST00000525348 LUMP51884 338 aaPredicted RBP3.56□□□□□ -1.84
CD44-217ENST00000525348 MFAP4P55083 255 aa3.56□□□□□ -1.84
CD44-217ENST00000525348 ARF3P61204 181 aaPredicted RBP3.56□□□□□ -1.84
CD44-217ENST00000525348 RPS18P62269 152 aaKnown RBP3.56□□□□□ -1.84
CD44-217ENST00000525348 IRX1P78414 480 aaPredicted RBP3.56□□□□□ -1.84
CD44-217ENST00000525348 ARF1P84077 181 aaKnown RBP3.56□□□□□ -1.84
CD44-217ENST00000525348 TUBB2AQ13885 445 aa3.56□□□□□ -1.84
CD44-217ENST00000525348 DCAF10Q5QP82 559 aa3.56□□□□□ -1.84
CD44-217ENST00000525348 LCE3CQ5T5A8 94 aa3.56□□□□□ -1.84
CD44-217ENST00000525348 INTS8Q75QN2 995 aaKnown RBP3.56□□□□□ -1.84
CD44-217ENST00000525348 SLC16A9Q7RTY1 509 aa3.56□□□□□ -1.84
CD44-217ENST00000525348 MYOCDQ8IZQ8 938 aa3.56□□□□□ -1.84
CD44-217ENST00000525348 SCML4Q8N228 414 aa3.56□□□□□ -1.84
CD44-217ENST00000525348 CHCHD4Q8N4Q1 142 aa3.56□□□□□ -1.84
CD44-217ENST00000525348 TEX19Q8NA77 164 aa3.56□□□□□ -1.84
CD44-217ENST00000525348 OR1J1Q8NGS3 322 aa3.56□□□□□ -1.84
CD44-217ENST00000525348 TRAF4Q9BUZ4 470 aaPredicted RBP3.56□□□□□ -1.84
CD44-217ENST00000525348 TUBB2BQ9BVA1 445 aa3.56□□□□□ -1.84
CD44-217ENST00000525348 XPO4Q9C0E2 1151 aaKnown RBP3.56□□□□□ -1.84
CD44-217ENST00000525348 SLC7A5P2Q9GIP4 190 aa3.56□□□□□ -1.84
CD44-217ENST00000525348 NACA2Q9H009 215 aa3.56□□□□□ -1.84
CD44-217ENST00000525348 WDR13Q9H1Z4 485 aa3.56□□□□□ -1.84
CD44-217ENST00000525348 ZHX3Q9H4I2 956 aa3.56□□□□□ -1.84
CD44-217ENST00000525348 ERVMER34-1Q9H9K5 563 aa3.56□□□□□ -1.84
CD44-217ENST00000525348 A4GALTQ9NPC4 353 aa3.56□□□□□ -1.84
CD44-217ENST00000525348 ECHDC1Q9NTX5 307 aa3.56□□□□□ -1.84
CD44-217ENST00000525348 CLIC5Q9NZA1 410 aa3.56□□□□□ -1.84
CD44-217ENST00000525348 LARSQ9P2J5 1176 aaKnown RBP3.56□□□□□ -1.84
CD44-217ENST00000525348 SEC63Q9UGP8 760 aaKnown RBP3.56□□□□□ -1.84
CD44-217ENST00000525348 PLAGL1Q9UM63 463 aa3.56□□□□□ -1.84
CD44-217ENST00000525348 BARX2Q9UMQ3 279 aaPredicted RBP3.56□□□□□ -1.84
CD44-217ENST00000525348 SPATA31D1Q6ZQQ2 1576 aa3.55□□□□□ -1.84
CD44-217ENST00000525348 MED19A0JLT2 244 aaPredicted RBP3.55□□□□□ -1.84
CD44-217ENST00000525348 MEIOCA2RUB1 952 aa3.55□□□□□ -1.84
CD44-217ENST00000525348 AP3D1O14617 1153 aa3.55□□□□□ -1.84
CD44-217ENST00000525348 CRLF1O75462 422 aa3.55□□□□□ -1.84
CD44-217ENST00000525348 GJB3O75712 270 aa3.55□□□□□ -1.84
CD44-217ENST00000525348 EML2O95834 649 aa3.55□□□□□ -1.84
CD44-217ENST00000525348 PSMB10P40306 273 aa3.55□□□□□ -1.84
CD44-217ENST00000525348 TMF1P82094 1093 aa3.55□□□□□ -1.84
CD44-217ENST00000525348 GABPB1Q06547 395 aaPredicted RBP3.55□□□□□ -1.84
CD44-217ENST00000525348 AIMP2Q13155 320 aaKnown RBP3.55□□□□□ -1.84
CD44-217ENST00000525348 PDIA5Q14554 519 aa3.55□□□□□ -1.84
CD44-217ENST00000525348 RAB41Q5JT25 222 aa3.55□□□□□ -1.84
CD44-217ENST00000525348 ARHGEF16Q5VV41 709 aa3.55□□□□□ -1.84
CD44-217ENST00000525348 LINGO4Q6UY18 593 aa3.55□□□□□ -1.84
CD44-217ENST00000525348 OR2AJ1Q8NGZ0 328 aa3.55□□□□□ -1.84
CD44-217ENST00000525348 HCAR2Q8TDS4 363 aa3.55□□□□□ -1.84
CD44-217ENST00000525348 SGK494Q96LW2 274 aa3.55□□□□□ -1.84
CD44-217ENST00000525348 OR6C1Q96RD1 312 aa3.55□□□□□ -1.84
CD44-217ENST00000525348 SERINC2Q96SA4 455 aa3.55□□□□□ -1.84
CD44-217ENST00000525348 NAP1L4Q99733 375 aaKnown RBP3.55□□□□□ -1.84
CD44-217ENST00000525348 RTN4RQ9BZR6 473 aa3.55□□□□□ -1.84
CD44-217ENST00000525348 VN1R1Q9GZP7 353 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms